Climate change undermines the global functioning of marine food webs

Sea water temperature affects all biological and ecological processes that ultimately impact ecosystem functioning. In this study, we examine the influence of temperature on global biomass transfers from marine secondary production to fish stocks. By combining fisheries catches in all coastal ocean areas and life‐history traits of exploited marine species, we provide global estimates of two trophic transfer parameters which determine biomass flows in coastal marine food web: the trophic transfer efficiency (TTE) and the biomass residence time (BRT) in the food web. We find that biomass transfers in tropical ecosystems are less efficient and faster than in areas with cooler waters. In contrast, biomass transfers through the food web became faster and more efficient between 1950 and 2010. Using simulated changes in sea water temperature from three Earth system models, we project that the mean TTE in coastal waters would decrease from 7.7% to 7.2% between 2010 and 2100 under the ‘no effective mitigation’ representative concentration pathway (RCP8.5), while BRT between trophic levels 2 and 4 is projected to decrease from 2.7 to 2.3 years on average. Beyond the global trends, we show that the TTEs and BRTs may vary substantially among ecosystem types and that the polar ecosystems may be the most impacted ecosystems. The detected and projected changes in mean TTE and BRT will undermine food web functioning. Our study provides quantitative understanding of temperature effects on trophodynamic of marine ecosystems under climate change.     

First record of Cisuralian–Guadalupian plant fossils from the Shan Plateau,eastern Myanmar

Permian plant fossils have never been reported from the Shan Plateau in eastern Myanmar. Recently, a black to gray carbonaceous mudstone unit containing abundant plant fossils was discovered just below the lowest part of Thitspin Limestone Formation from the Linwe Area, eastern Myanmar. Although only five taxa were identified, the plant assemblage provides the first evidence of the occurrence of Cathaysian elements in eastern Myanmar and potentially indicates the presence of a highly diverse Permian flora. Among the five species, Cordaites principalis and Annularia mucronata were cosmopolitan species; while Callipteridum cf. koraiense, Taeniopteris crassinervis Mo and Rhipidopsis lobata were mostly recorded in the Cathaysia Flora. Therefore, the present assemblage generally indicates a palaeobiogeographical affinity to the Cathaysian Province. Stratigraphically, Callipteridum cf. koraiense was mainly reported from Cisuralian to Wordian; whereas Taeniopteris crasssnervis Mo and Rhipidopsis lobata were recorded from Capitanian to Changhsingian, which suggests a general Permian age based on the plant assemblage itself only. However, the carbonaceous mudstone at the outcrop is overlain by the Thitspin Limestone Formation containing middle Guadalupian fusulinids. Based on previous faunal analyses, the Sibumasu terrane contains typical Gondwanan cold-water faunas during the early Cisuralian, warm-water faunas occurred after Sakmarian. Thus, age of the fossil-plant-containing carbonaceous mudstone is very likely between late Cisuralian and early Guadalupian as constrained by its overlying fusulinids and its warm Cathaysian palaeobiogeographical affinity.     

Tropical forest loss drives divergent patterns in functional diversity of forest and non-forest birds

Tropical forests have been facing high rates of deforestation driven by multiple anthropogenic disturbances, with severe consequences for biodiversity. However, the understanding of such effects on functional diversity is still limited in tropical regions, especially considering different ecological groups responses. Here, we evaluated the functional responses of birds to forest loss at the threatened Brazilian Atlantic forest, considering the complete assemblage, and both forest-dependent and non-forest-dependent species. Birds were surveyed in 40 forest sites with a forest cover gradient, located in two regions showing different land use types. We tested different models to assess the responses of functional diversity indices to forest loss in these sites. Although functional diversity did not differ between regions, forest and non-forest birds showed divergent responses to forest loss. Deforested landscapes presented an increase in functional richness (SESFRic) and evenness for forest species and an increase of functional dispersion for non-forest birds. Additionally, forested landscapes harbor birds presenting lower body mass and wing length, and non-forest species with lower tarsus length. The maintenance of some functional metrics through forest loss resulted from a compensatory dynamic between forest and non-forest birds, indicating that only evaluating the complete assemblage may mask important idiosyncratic patterns of different ecological groups. Although non-forest species are relatively capable to maintain bird functional diversity in deforested landscapes, forest birds are facing a drastic ongoing collapse in these sites, representing an alarming signal for the maintenance of forest ecosystem function.     

Liana communities exhibit different species composition,diversity and community structure across forest types in the Congo Basin

Lianas are poorly characterized for central African forests. We quantify variation in liana composition, diversity and community structure in different forest types in the Yangambi Man and Biosphere Reserve, Democratic Republic of Congo. These attributes of liana assemblages were examined in 12 1-ha plots, randomly demarcated within regrowth forest, old growth monodominant forest, old growth mixed forest and old growth edge forest. Using a combination of multivariate and univariate community analyses, we visualize the patterns of these liana assemblage attributes and/or test for their significant differences across forest types. The combined 12 1-ha area contains 2,638 lianas (≥2 cm diameter) representing 105 species, 49 genera and 22 families. Liana species composition differed significantly across forest types. Taxonomic diversity was higher in old growth mixed forests compared to old growth monodominant and regrowth forests. Trait diversity was higher than expected in the regrowth forest as opposed to the rest of forest types. Similarly, the regrowth forest differed from the rest of forest types in the pattern of liana species ecological traits and diameter frequency distribution. The regrowth forest was also less densely populated in lianas and had lower liana total basal area than the rest of forest types. We speculate that the mechanism of liana competitive exclusion by dominant tree species is mainly responsible for the lower liana species diversity in monodominant compared to mixed forests. We attribute variation in liana community structure between regrowth and old growth forests mostly to short development time of size hierarchies.     

Human TEN1 Maintains Telomere Integrity and Functions in Genome-wide Replication Restart

TEN1 is a component of the mammalian CTC1-STN1-TEN1 complex. CTC1 and/or STN1 functions in telomere duplex replication, C-strand fill-in, and genome-wide restart of replication following fork stalling. Here we examine the role of human TEN1 and ask whether it also functions as a specialized replication factor. TEN1 depletion causes an increase in multitelomere fluorescent in situ hybridization (FISH) signals similar to that observed after CTC1 or STN1 depletion. However, TEN1 depletion also results in increased telomere loss. This loss is not accompanied by increased telomere deprotection, recombination, or T-circle release. Thus, it appears that both the multiple telomere signals and telomere loss stem from problems in telomere duplex replication. TEN1 depletion can also affect telomere length, but whether telomeres lengthen or shorten is cell line-dependent. Like CTC1 and STN1, TEN1 is needed for G-overhang processing. Depletion of TEN1 does not effect overhang elongation in mid-S phase, but it delays overhang shortening in late S/G₂. These results indicate a role for TEN1 in C-strand fill-in but do not support a direct role in telomerase regulation. Finally, TEN1 depletion causes a decrease in genome-wide replication restart following fork stalling similar to that observed after STN1 depletion. However, anaphase bridge formation is more severe than with CTC1 or STN1 depletion. Our findings indicate that TEN1 likely functions in conjunction with CTC1 and STN1 at the telomere and elsewhere in the genome. They also raise the possibility that TEN1 has additional roles and indicate that TEN1/CTC1-STN1-TEN1 helps solve a wide range of challenges to the replication machinery.     

Duplication and Functional Specialization of the Telomere-capping Protein Cdc13 in Candida Species

The budding yeast G-tail binding complex CST (Cdc13-Stn1-Ten1) is crucial for both telomere protection and replication. Previous studies revealed a family of Cdc13 orthologues (Cdc13A) in Candida species that are unusually small but are nevertheless responsible for G-tail binding and the regulation of telomere lengths and structures. Here we report the identification and characterization of a second family of Cdc13-like proteins in the Candida clade, named Cdc13B. Phylogenetic analysis and sequence alignment indicate that Cdc13B probably arose through gene duplication prior to Candida speciation. Like Cdc13A, Cdc13B appears to be essential. Deleting one copy each of the CDC13A and CDC13B genes caused a synergistic effect on aberrant telomere elongation and t-circle accumulation, suggesting that the two paralogues mediate overlapping and nonredundant functions in telomere regulation. Interestingly, Cdc13B utilizes its C-terminal OB-fold domain (OB4) to mediate self-association and binding to Cdc13A. Moreover, the stability of the heterodimer is evidently greater than that of either homodimer. Both the Cdc13 A/A homodimer and A/B heterodimer, but not the B/B homodimer, recognized the telomere G-tail repeat with high affinity and sequence specificity. Our results reveal novel evolutionary elaborations of the G-tail-binding protein in Saccharomycotina yeast, suggesting a drastic remodeling of CDC13 that entails gene duplication, fusion, and functional specialization. The repeated and independent duplication of G-tail-binding proteins such as Cdc13 and Pot1 hints at the evolutionary advantage of having multiple G-tail-binding proteins.     

HIV-1 Vpr Protein Inhibits Telomerase Activity via the EDD-DDB1-VPRBP E3 Ligase Complex

Viral pathogens utilize host cell machinery for their benefits. Herein, we identify that HIV-1 Vpr (viral protein R) negatively modulates telomerase activity. Telomerase enables stem and cancer cells to evade cell senescence by adding telomeric sequences to the ends of chromosomes. We found that Vpr inhibited telomerase activity by down-regulating TERT protein, a catalytic subunit of telomerase. As a molecular adaptor, Vpr enhanced the interaction between TERT and the VPRBP substrate receptor of the DYRK2-associated EDD-DDB1-VPRBP E3 ligase complex, resulting in increased ubiquitination of TERT. In contrast, the Vpr mutant identified in HIV-1-infected long-term nonprogressors failed to promote TERT destabilization. Our results suggest that Vpr inhibits telomerase activity by hijacking the host E3 ligase complex, and we propose the novel molecular mechanism of telomerase deregulation in possibly HIV-1 pathogenesis.