Evolution of herbs: key to the conundrum might be tolerance not avoidance

草本植物的进化：解决难题的关键在于忍耐而非逃避 木本植物延续了其祖先被子植物的生长形态,而草本植物则不断地从中进化演变。虽然关于驱动草本植物习性进化的因素已有许多假设,但是通过舍弃地上生物质从而避免冬季冻害的能力常常被认为是促使其进化的主要力量。然而,鉴于草本植物在反复干扰中依旧能够轻松存活,我们提出了不可预测的干扰可能比季节性霜冻更为重要的假设。我们通过比较草本植物和木本植物应对3种模拟干扰(容易预测的冬季冰冻、不易预测的春季冰冻和食草作用)的能力来验证这一假设。通过比较20种不同植物在同质园实验中的表现,我们评估了这些干扰对植物死亡和再生方面的影响。研究结果表明,在冬季冰冻条件下,比起木本植物,草本植物在存活率上并没有优势。在不易预测的春季冰冻条件下,草本植物比木本植物的存活率更高。而在模拟食草作用的条件下,草本植物的这种生存优势更大。在不可预测的条件下,草本植物相较于木本植物的生存优势表明,草本植物的生长形式可能是对不可预测的干扰的适应,这种逆境忍耐通过其损失地上生物质也能够生存的能力得以实现。因此,哺乳动物的食草行为或火灾等原因或许最有可能是木本植物向草本植物过渡的因素。     

Widespread phenotypic and genetic divergence along altitudinal gradients in animals

Altitudinal gradients offer valuable study systems to investigate how adaptive genetic diversity is distributed within and between natural populations and which factors promote or prevent adaptive differentiation. The environmental clines along altitudinal gradients tend to be steep relative to the dispersal distance of many organisms, providing an opportunity to study the joint effects of divergent natural selection and gene flow. Temperature is one variable showing consistent altitudinal changes, and altitudinal gradients can therefore provide spatial surrogates for some of the changes anticipated under climate change. Here, we investigate the extent and patterns of adaptive divergence in animal populations along altitudinal gradients by surveying the literature for (i) studies on phenotypic variation assessed under common garden or reciprocal transplant designs and (ii) studies looking for signatures of divergent selection at the molecular level. Phenotypic data show that significant between‐population differences are common and taxonomically widespread, involving traits such as mass, wing size, tolerance to thermal extremes and melanization. Several lines of evidence suggest that some of the observed differences are adaptively relevant, but rigorous tests of local adaptation or the link between specific phenotypes and fitness are sorely lacking. Evidence for a role of altitudinal adaptation also exists for a number of candidate genes, most prominently haemoglobin, and for anonymous molecular markers. Novel genomic approaches may provide valuable tools for studying adaptive diversity, also in species that are not amenable to experimentation.     

Limited plasticity in the phenotypic variance‐covariance matrix for male advertisement calls in the black field cricket,Teleogryllus commodus

Phenotypic integration and plasticity are central to our understanding of how complex phenotypic traits evolve. Evolutionary change in complex quantitative traits can be predicted using the multivariate breeders’ equation, but such predictions are only accurate if the matrices involved are stable over evolutionary time. Recent study, however, suggests that these matrices are temporally plastic, spatially variable and themselves evolvable. The data available on phenotypic variance‐covariance matrix ( P ) stability are sparse, and largely focused on morphological traits. Here, we compared P for the structure of the complex sexual advertisement call of six divergent allopatric populations of the Australian black field cricket, Teleogryllus commodus. We measured a subset of calls from wild‐caught crickets from each of the populations and then a second subset after rearing crickets under common‐garden conditions for three generations. In a second experiment, crickets from each population were reared in the laboratory on high‐ and low‐nutrient diets and their calls recorded. In both experiments, we estimated P for call traits and used multiple methods to compare them statistically (Flury hierarchy, geometric subspace comparisons and random skewers). Despite considerable variation in means and variances of individual call traits, the structure of P was largely conserved among populations, across generations and between our rearing diets. Our finding that P remains largely stable, among populations and between environmental conditions, suggests that selection has preserved the structure of call traits in order that they can function as an integrated unit.     

The garden of the “Casa delle Nozze di Ercole ed Ebe“ in Pompeii (Italy): Palynological investigations

ABSTRACT

Palynological investigations in the garden of the “Casa delle Nozze di Ercole ed Ebe“ in Pompeii revealed the presence of Vitis and Citrus. Citrus has often been said to be cultivated in Roman times, but no plant remains have ever confirmed this hypothesis as regards Pompeii. In this paper, we give evidence for an early cultivation of this plant in a garden. Analyses revealed that, as already observed in other gardens, the ground was covered by herbs which were the same as those found in ancient and contemporary meadows of the Vesuvian area.     

Anticarcinogenic antioxidants as inhibitors against intracellular oxidative stress

Oxidative stress has been implicated in the pathogenesis of numerous diseases, including cancer. In the present study, the protective effect of natural antioxidants, such as quercetin and tea polyphenols, on intracellular oxidative stress was studied. Here we report a novel function of quercetin and tea polyphenols, as potential inhibitors of 4-hydroxy-2-nonenal (HNE)-induced intracellular oxidative stress and cytotoxicity. In rat liver epithelial RL34 cells, a potent electrophile HNE dramatically induced the productions of reactive oxygen species (ROS), which correlated well with the reduction in cell viability. We found that quercetin and tea polyphenols, such as epigallocatechin gallate and theaflavins and their gallate esters, significantly inhibited the HNE-induced ROS production and cytotoxicity. In addition, HNE induced a transient decrease in the mitochondrial membrane potential (Δψ), which was also retarded by the antioxidants. These data suggest that the antioxidants, such as quercetin and tea polyphenols, are inhibitors against mitochondrial ROS production.     

Young,intact and nested retrotransposons are abundant in the onion and asparagus genomes

Background and Aims

Although monocotyledonous plants comprise one of the two major groups of angiosperms and include >65 000 species, comprehensive genome analysis has been focused mainly on the Poaceae (grass) family. Due to this bias, most of the conclusions that have been drawn for monocot genome evolution are based on grasses. It is not known whether these conclusions apply to many other monocots.

Methods

To extend our understanding of genome evolution in the monocots, Asparagales genomic sequence data were acquired and the structural properties of asparagus and onion genomes were analysed. Specifically, several available onion and asparagus bacterial artificial chromosomes (BACs) with contig sizes >35 kb were annotated and analysed, with a particular focus on the characterization of long terminal repeat (LTR) retrotransposons.

Key Results

The results reveal that LTR retrotransposons are the major components of the onion and garden asparagus genomes. These elements are mostly intact (i.e. with two LTRs), have mainly inserted within the past 6 million years and are piled up into nested structures. Analysis of shotgun genomic sequence data and the observation of two copies for some transposable elements (TEs) in annotated BACs indicates that some families have become particularly abundant, as high as 4–5 % (asparagus) or 3–4 % (onion) of the genome for the most abundant families, as also seen in large grass genomes such as wheat and maize.

Conclusions

Although previous annotations of contiguous genomic sequences have suggested that LTR retrotransposons were highly fragmented in these two Asparagales genomes, the results presented here show that this was largely due to the methodology used. In contrast, this current work indicates an ensemble of genomic features similar to those observed in the Poaceae.     

Short distances between extreme microhabitats do not result in ecotypes in Syntrichia caninervis

Abstract

Phenotypic variation occurs in many populations of plants. When this variation occurs along an environmental gradient, the immediate question is whether the variation is attributed to phenotypic plasticity, ecotypes, or some combination of the two. The moss Syntrichia caninervis appears morphologically variable along an environmental gradient changing rapidly from low light, low temperature, and high moisture levels in the understory microhabitat to high light, high temperature, and low moisture levels in the intershrub microhabitat. We tested for the presence of physiological variation using recovery from a heat-shock event in a mimicked microhabitat light environment, and for morphological variation using a common garden with the ultimate goal of attributing observed variation to plasticity, genetic variation, or a combination. The results suggest that plasticity plays a large role in trait variation. Photosynthetic recovery depended on the current light levels of an environment and not the original microhabitat. The supposed morphological variation in the field was not reflected in the test traits (awn length, leaf area, and shoot volume) and further growth in a common garden continued to show no variation between microhabitats.     

南方红壤区3年生茶园土壤呼吸特征

为探讨南方红壤区茶园的土壤呼吸特征,采用LI-Cor8100开路式土壤碳通量测定系统观测3年生茶园系统的土壤呼吸速率,对茶园土壤呼吸速率的季节变化和在茶行尺度上的空间异质性进行了研究。结果表明,茶园土壤呼吸速率的月动态变化呈明显的单峰曲线特征,峰值出现在8月;茶园土壤呼吸速率的月动态变化与温度呈极显著相关(P<0.01),土壤10 cm的温度能够解释茶园不同观测区域土壤呼吸速率月动态变化的67.79%~88.52%;用指数方程计算的茶园不同观测区域土壤呼吸Q10值为1.58~1.86。在茶行尺度上,茶园土壤呼吸速率存在明显的空间异质性,土壤呼吸速率通常在距离茶树基部较近的位置较高;根系生物量能够解释茶园土壤呼吸速率在茶行尺度上空间变异的82.68%。因此,根系分布的空间差异是造成茶园土壤呼吸速率空间异质性的主要原因。     

Microbial composition affects the functioning of estuarine sediments

Although microorganisms largely drive many ecosystem processes, the relationship between microbial composition and their functioning remains unclear. To tease apart the effects of composition and the environment directly, microbial composition must be manipulated and maintained, ideally in a natural ecosystem. In this study, we aimed to test whether variability in microbial composition affects functional processes in a field setting, by reciprocally transplanting riverbed sediments between low- and high-salinity locations along the Nonesuch River (Maine, USA). We placed the sediments into microbial ‘cages'' to prevent the migration of microorganisms, while allowing the sediments to experience the abiotic conditions of the surroundings. We performed two experiments, short- (1 week) and long-term (7 weeks) reciprocal transplants, after which we assayed a variety of functional processes in the cages. In both experiments, we examined the composition of bacteria generally (targeting the 16S rDNA gene) and sulfate-reducing bacteria (SRB) specifically (targeting the dsrAB gene) using terminal restriction fragment length polymorphism (T-RFLP). In the short-term experiment, sediment processes (CO₂ production, CH₄ flux, nitrification and enzyme activities) depended on both the sediment''s origin (reflecting differences in microbial composition between salt and freshwater sediments) and the surrounding environment. In the long-term experiment, general bacterial composition (but not SRB composition) shifted in response to their new environment, and this composition was significantly correlated with sediment functioning. Further, sediment origin had a diminished effect, relative to the short-term experiment, on sediment processes. Overall, this study provides direct evidence that microbial composition directly affects functional processes in these sediments.