Vagility and the Monsoon Rain Forest Archipelago of Northern Australia: Patterns of Genetic Diversity in Syzygium nervosum (Myrtaceae)1

Syzygium nervosum is a common monsoon rain forest tree. Its habitat in Australia consists of small rain forest patches that are scattered through a savanna matrix. It is a mast flowering canopy species that produces large quantities of fruits fed on by mobile frugivores such as birds and fruit bats. The genetic diversity of this species was investigated, especially in relation to rain forest patch size, geographic isolation, and geographic distribution. Syzygium nervosum was found to have high levels of genetic diversity within populations (H_e= 0.307). Diversity among populations, however, was relatively low (Fsr = 0.118), and was not spatially structured across its geographic range in Australia. This is thought to have been caused by relatively frequent gene flow among populations (N_m= 1.67), mediated primarily by mobile frugivores. Genetic diversity was not correlated with patch size or isolation. It is thought that seed dispersal by frugivores has acted to expand the effective population size of this species beyond the individual rain forest patch, and thus has prevented the substantial loss of genetic diversity that otherwise would have been observed. Thus this species is dependent upon these frugivores for the maintenance of its genetic diversity and hence its long-term viability. These results lend support to theories of post-Holocene expansion of rain forest by vagile species in northern Australia.     

Studies on the Chemical Constituents of Erycibe hainanesis

Five compounds have been isolated from the stem of Erycibe hainanesis Merr. They were identified as scopoletin (1), scopolin (2), baogongteng A (3), baogongteng C (4) and erycibelline (5) by spectral analyses as well as chemical methods. The derivatives, 4m, 5m and 5ma, are new tropane compounds', their spectral data and physical constants are reported in this paper. Erycibe hainanesis Merr. may replace Erycibe obtusifolia Benth. as a medicinal herb, and it is yet one of the plant resources of new myotic baogongteng A.     

Phenotypic and AFLP characterization of two new pineapple somaclones derived from in vitro culture

Fifty pineapple buds (cv. Red Spanish Pinar, donor) were collected from field-grown plants and cultured in vitro. Forty-three young pineapple shoots were obtained after 42 d of implantation. Shoots were micropropagated for 168 d to produce 24,768 shoots. Three hundred young leaves were randomly selected as explants for callus formation. Calli proliferated for 4 months. Five hundred calli were randomly selected and transferred to the plantlet regeneration medium. Four hundred twenty-seven in vitro-plantlets were obtained and later hardened ex vitro. Then, 387 plantlets were transferred to the field environment and asexually propagated for two generations (30 months). Only two phenotype variants were identified: P3R5 and Dwarf. A more detailed study was carried out to compare these two variants with the donor plant. The variant P3R5 showed differences in the number of slips and suckers, and in the presence of thorns in the leaves and in the fruit crowns. The somaclonal variant Dwarf, was different from the donor plant in regard with the plant height; the peduncle diameter; the number of shoots, slips and suckers; the fruit mass with crown; the number of eyes in the fruit; the fruit height and diameter; the leaf color; the plant architecture; the length of plant generation cycle; and the fruit color and shape. Both somaclonal variants showed different AFLP banding patterns in comparison with the donor cultivar.     

洋蒲桃次生木质部中导管分子的解剖学

运用细胞图像分析系统和显微照相的方法对洋蒲桃（Syzygium samarangense）次生木质部导管分子进行了观察研究。次生木质部导管分子类型有：两端具尾导管、一端具尾导管和无尾导管。导管分子穿孔板存在着4种类型：两端均为具2个单穿孔的复穿孔板;一端为1个单穿孔板,另1端为具2个单穿孔的复穿孔板;两端均为单穿孔板：两单穿孔板位于同一端壁两侧相互对应以及一些过渡类型穿孔板。根据观察结果,分析了各类型穿孔板之间的演化关系。     

Comparative analysis of DNA polymorphisms and phylogenetic relationships among Syzygium cumini Skeels based on phenotypic characters and RAPD technique

The Indian black berry (Syzygium cumini Skeels) has a great nutraceutical and medicinal properties. As in other fruit crops, the fruit characteristics are important attributes for differentiation were also determined for different accessions of S. cumini. The fruit weight, length, breadth, length: breadth ratio, pulp weight, pulp content, seed weight and pulp: seed ratio significantly varied in different accessions. Molecular characterization was carried out using PCR based RAPD technique. Out of 80 RAPD primers, only 18 primers produced stable polymorphisms that were used to examine the phylogenetic relationship. A sum of 207 loci were generated out of which 201 loci found polymorphic. The average genetic dissimilarity was 97 per cent among jamun accessions. The phylogenetic relationship was also determined by principal coordinates analysis (PCoA) that explained 46.95 per cent cumulative variance. The two-dimensional PCoA analysis showed grouping of the different accessions that were plotted into four sub-plots, representing clustering of accessions. The UPGMA (r = 0.967) and NJ (r = 0.987) dendrogram constructed based on the dissimilarity matrix revealed a good degree of fit with the cophenetic correlation value. The dendrogram grouped the accessions into three main clusters according to their eco-geographical regions which given useful insight into their phylogenetic relationships.     

Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max

Background

Quantitative trait locus (QTL) mapping is an efficient approach to discover the genetic architecture underlying complex quantitative traits. However, the low density of molecular markers in genetic maps has limited the efficiency and accuracy of QTL mapping. In this study, specific length amplified fragment sequencing (SLAF-seq), a new high-throughput strategy for large-scale SNP discovery and genotyping based on next generation sequencing (NGS), was employed to construct a high-density soybean genetic map using recombinant inbred lines (RILs, Luheidou2 × Nanhuizao, F_5:8). With this map, the consistent QTLs for isoflavone content across various environments were identified.

Results

In total, 23 Gb of data containing 87,604,858 pair-end reads were obtained. The average coverage for each SLAF marker was 11.20-fold for the female parent, 12.51-fold for the male parent, and an average of 3.98-fold for individual RILs. Among the 116,216 high-quality SLAFs obtained, 9,948 were polymorphic. The final map consisted of 5,785 SLAFs on 20 linkage groups (LGs) and spanned 2,255.18 cM in genome size with an average distance of 0.43 cM between adjacent markers. Comparative genomic analysis revealed a relatively high collinearity of 20 LGs with the soybean reference genome. Based on this map, 41 QTLs were identified that contributed to the isoflavone content. The high efficiency and accuracy of this map were evidenced by the discovery of genes encoding isoflavone biosynthetic enzymes within these loci. Moreover, 11 of these 41 QTLs (including six novel loci) were associated with isoflavone content across multiple environments. One of them, qIF20-2, contributed to a majority of isoflavone components across various environments and explained a high amount of phenotypic variance (8.7% - 35.3%). This represents a novel major QTL underlying isoflavone content across various environments in soybean.

Conclusions

Herein, we reported a high-density genetic map for soybean. This map exhibited high resolution and accuracy. It will facilitate the identification of genes and QTLs underlying essential agronomic traits in soybean. The novel major QTL for isoflavone content is useful not only for further study on the genetic basis of isoflavone accumulation, but also for marker-assisted selection (MAS) in soybean breeding in the future.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-1086) contains supplementary material, which is available to authorized users.     

Recurrent production of plants of black plum, Syzygium cuminii (L.) Skeels, a myrtaceous fruit tree, from in vitro cultured seedling explants

 The epicotyl segments bearing scaly leave(s), excised from in vitro grown seedlings of Syzygium cuminii, produced multiple shoots when cultivated on Murashige and Skoog's (MS, 1962) medium supplemented with different concentrations of BA (0–2 mg l^–1). The optimum response was recorded on the medium containing 1 mg l^–1 BA. An average of 8.6 shoots per explant were produced 60 days after inoculation, following transfer to fresh medium after 30 days. The shoots were excised, and the residual explants were transferred to fresh medium, where they again developed shoots. Up to five such passages resulted in the production of shoots from the repeatedly subcultured original explants. However, during the fifth passage, organogenic response was negligible and the explants turned brown thereafter. Following repeated harvesting of shoots and subculture of the residual explants, an average of 29 shoots per explant was obtained. The in vitro developed shoots produced roots when transferred to Knop's medium supplemented with 2% sucrose and 1 mg l^–1 IAA. The developed plantlets were planted in soil and transferred to fields after an acclimatization period of 7–8 months. These plants have been thriving well for more than 3 years. The nodal explants excised from in vitro developed shoots and plants also exhibited a similar response when cultured on MS+1 mg l^–1 BA. Thus, a protocol has been developed to raise plants of S. cuminii at any time of the year. Received: 1 December 1998 / Revision received: 1 July 1999 · Accepted: 12 July 1999     

轮叶蒲桃果实红色素提取与基本性质分析

探讨轮叶蒲桃果实红色素的最佳提取剂,定量定性分析光、温度、氧化还原介质对该色素稳定性的影响。结果表明,轮叶蒲桃果实色素最佳提取剂为酸性乙醇,属花色苷类色素。室内自然光对色素影响不大,该色素在80℃以下较稳定,对氧化剂、还原剂反应敏感。     

赤楠果实红色素的性质及提取工艺

本实验探讨赤楠果实红色素的理化性质及提取条件。结果表明,该色素属花色苷类;其最佳提取工艺是:1%HCl-乙醇(1ml HCl:99ml 95%乙醇)溶液作为提取剂,料液比1/10,温度35℃,提取时间3h,提取次数3次。     

两种木本植物光合作用对油页岩废渣污染的响应

比较油页岩污染点(茂名石化公司废渣场)和相对清洁点(茂名市林科所)生长的灌木翅荚决明(CassiaalataL.)和乔木乌墨(Syzygiumcumini(Linn.)Skeels)的光合生理指标的变化。在两个试验点,翅荚决明的净光合速率、气孔导度和蒸腾速率的绝对值在一天的多数时段均高于乌墨,但与对照点相比,在污染点翅荚决明的净光合速率和水分利用效率的下降幅度却大于乌墨,气孔导度则相反,可能与土壤含水量有关。结果表明乌墨的抗油页岩废渣污染能力强于翅荚决明。