海洋生态系统受海洋病毒影响的研究

该文对一个海洋病毒感染模型进行研究,分析其动力学行为,发现系统的动力性受病毒复制因素的影响较大,找到病毒复制因素的阈值,研究系统平衡点的存在性,稳定性,系统持久性及分支的产生.这对海洋生态研究具有一定意义.     

新疆伊犁地区马匹亨德拉病毒脑内感染情况调查

目的检测新疆伊犁地区天然牧场放养马群脑组织中亨德拉病毒（Hendra Virus,HeV）的核酸片段,调查该地区马群中枢神经系统HeV感染流行状况。方法针对HeV高度保守区核蛋白（N）基因设计特异性引物和探针,采用一步法实时荧光定量RT-PCR检测中枢神经系统感染样本中低浓度HeV RNA的方法,检测新疆伊犁草原地区天然放养且未接种HeV疫苗的183例马匹脑组织。结果最低特异性检出浓度可低至2.6×102copies/μL,与其他单股负链RNA病毒如同属的尼帕病毒（NiV）无交叉反应,对183例马脑组织进行一步法实时荧光定量RT-PCR检测,未检出阳性样本。结论初步流行病学研究尚未发现我国新疆伊犁地区天然牧场放养马匹中存在HeV感染的证据,提示该地区短时间内爆发亨德拉病毒感染的可能性小。     

入侵杂草五爪金龙在切割处理下的再生能力

对五爪金龙(Ipomoea cairica (Linn.) Sweet)进行切割试验,对其在不同光环境及不同季节的萌芽率、成活率、主茎长度和生物量等进行研究。结果表明:五爪金龙切条越短其萌芽越迟,其成活率、主茎长度和生物量下降;五爪金龙在光下和林下的成活率无显著差异,但林下生物量较低;切条越短,林下条件越不利于主茎的伸长;冬季五爪金龙的主茎长度和生物量最低;夏季在光下和林下不能再生的最长切条长度均为4 cm;秋季均为1 cm;而冬季光下为1 cm,林下为3 cm;春季光下则为4 cm,林下为5 cm。春季时将五爪金龙切割为5 cm并置于林下是最经济的防除方法;如果不考虑季节性及光条件,应将其切割至1 cm以下的片段,可以有效防止五爪金龙再生。     

Development of a Loop-Mediated Isothermal Amplification Assay for Porcine Circovirus Type 2

In this study, the loop-mediated isothermal amplification (LAMP) method was used to develop a rapid and simple detection system for porcine circovirus type 2 (PCV2). According to the PCV2 sequences published in GenBank, multiple LAMP primers were designed targeting conserved sequences of PCV2. Using the DNA extracted from PCV2 isolates HUN-09 and SD-09 as the template, LAMP reactions in a PCV2 LAMP system was performed, the amplification products were detected by adding SYBR Green I and could be observed di...     

Canine distemper virus utilizes different receptors to infect chicken embryo fibroblasts and vero cells

Inducing animal viruses to adapt to chicken embryos or chicken embryo fibroblasts (CEF) is a common method to develop attenuated live vaccines with full security. Canine distemper virus (CDV) also does this, but the mechanisms and particular receptors remain unclear. Virus overlay protein blot assays were carried out on CEF membrane proteins, which were extracted respectively with a Mem-PER™ kit, a radioimmunoprecipitation assay buffer or a modified co-immunoprecipitation method, and revealed a common 57 kDa positive band that differed from the 42-kDa positive band in Vero cells and also from those receptors reported in lymphocytes and 293 cells, indicating a receptor diversity of CDV and the possibility of the 57-kDa protein acting as a receptor that is involved in adaptive infection of CDV Kunming strain to CEF.     

Characterisation of the coccolithovirus intein

The identification of inteins in viral genomes is becoming increasingly common. Inteins are selfish DNA elements found within coding regions of host proteins. Following translation, they catalyse their own excision and the formation of a peptide bond between the flanking protein regions. Many inteins also display homing endonuclease function. Here, the newly identified coccolithovirus intein is described and is predicted to have both self-splicing and homing endonuclease activity. The biochemical mechanism of its protein splicing activity is hypothesised, and the prevalence of the intein among natural coccolithovirus isolates is tested.     

Empirical Bayesian estimation of the disease transmission probability in multiple-vector-transfer designs

Plant disease is responsible for major losses in agriculture throughout the world. Diseases are often spread by insect organisms that transmit a bacterium, virus, or other pathogen. To assess disease epidemics, plant pathologists often use multiple-vector-transfers. In such contexts, groups of insect vectors are moved from an infected source to each of n test plants that will then be observed for developing symptoms of infection. The purpose of this paper is to present new estimators for p, the probability of pathogen transmission for an individual vector, motivated from an empirical Bayesian approach. We specifically investigate four such estimators, characterize their small-sample properties, and propose new credible intervals for p. These estimators remove the need to specify hyperparameters a priori and are shown to be easier to compute than the classical Bayes estimators proposed by Chaubey and Li (1995, Journal of Official Statistics 11, 1035-1046) and Chick (1996, Biometrics 52, 1055-1062). Furthermore, some of these estimators are shown to have better frequentist properties than the commonly used maximum likelihood estimator and to provide a smaller Bayes risk than the estimator proposed by Burrows (1987, Phytopathology 77, 363-365).     

The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus

The Paecilomyces lilacinus is the most widely tested fungus for the control of root-knot and cyst nematodes. The fungus has also been implicated in a number of human and animal infections, difficulties in diagnosis often result in misdiagnosis or delays in identification leading to a delay in treatment. Here, we report the development of species-specific primers for the identification of P. lilacinus based on sequence information from the ITS gene, and their use in identifying P. lilacinus isolates, including clinical isolates of the fungus. The primer set generated a single PCR fragment of 130 bp in length that was specific to P. lilacinus and was also used to detect the presence of P. lilacinus from soil, roots and nematode eggs. Real-time PCR primers and a TaqMan probe were also developed and provided quantitative data on the population size of the fungus in two field sites. PCR, bait and culture methods were combined to investigate the presence and abundance of the fungus from two field sites in the United Kingdom where potato cyst nematode populations were naturally declining, and results demonstrated the importance of using a combination of methods to investigate population size and activity of fungi.     

Strategies for Pyramiding Resistance Genes Against the Barley Yellow Mosaic Virus Complex (BaMMV,BaYMV, BaYMV-2)

Barley Yellow Mosaic Virus disease caused by different strains of BaYMV and BaMMV is a major threat to winter barley cultivation in Europe. Pyramiding of resistance genes may be considered as a promising strategy to avoid the selection of new virus strains and to create more durable resistances. However, this goal cannot be achieved by phenotypic selection due to the lack of differentiating virus strains. For pyramiding of resistance genes rym4, rym5, rym9 and rym11, located on chromosomes 3H and 4H of barley two different strategies have been developed. These strategies are based on doubled haploid lines (DHs) and marker assisted selection procedures. On the one hand F₁ derived DH-plants of single crosses were screened by molecular markers for genotypes being homozygous recessive for both resistance genes. These genotypes were crossed to lines carrying one resistance gene in common and an additional third gene, leading to a DH-population of which 25% carry three resistance genes, 50% have two resistance genes and 25% possess a single resistance gene homozygous recessively. Alternatively, F₁ plants having one resistance gene in common were directly inter-crossed [e.g. (rym4 × rym9) × (rym4 × rym11)] and about 100 seeds were produced per combination. Within these complex cross progenies plants were identified by markers being homozygous at the common resistance locus and heterozygous at the others. From such plants, theoretically present at a frequency of 6.25%, DH-lines were produced, which were screened for the presence of genotypes carrying three or two recessive resistance genes in a homozygous state. Besides DH-plants carrying all possible two-gene combinations, 20 DH-plants out of 107 analysed carrying rym4, rym9, and rym11 and 27 out of 187 tested carrying rym5, rym9, and rym11 homozygously have been detected using the second strategy which is faster but needs co-dominant markers, because in contrast to the first strategy marker selection is carried out on heterozygous genotypes.