Three-dimensional geometric morphometrics of Arvicanthis: implications for systematics and taxonomy

Arvicanthis is an African murid, found throughout sub-Saharan Africa, Sudan and Egypt. Although in the past 10 years several studies have been carried out to assess its systematics, there is still a need for a general revision of the genus. In this study the morphometric relationships between 71 populations throughout the range were investigated. A three-dimensional geometric morphometric approach was used to assess differences in the size and shape of the skull. These were related to the different biogeographical domains characterizing the range of the genus and to molecular and karyotypic phylogenies. Results agree only in part with phylogeny, and show a close relationship with the environmental backgrounds of each species. It is therefore suggested that the adaptation of Arvicanthis to local environment has played an important role in the phenotypic evolution of the skull. This leads to problems in taxonomic definitions based on morphometrics, which should not be used without comparison with other independently derived characters such as the DNA and the karyotype.     

Describing Ordinal Odds Ratios for Stratified r × c Tables

For an r × ctable with ordinal responses, odds ratios are commonly used to describe the relationship between the row and column variables. This article shows two types of ordinal odds ratios where local‐global odds ratios are used to compare several groups on a c‐category ordinal response and a global odds ratio is used to measure the global association between a pair of ordinal responses. When there is a stratification factor, we consider Mantel‐Haenszel (MH) type estimators of these odds ratios to summarize the association from several strata. Like the ordinary MH estimator of the common odds ratio for several 2 × 2 contingency tables, the estimators are used when the association is not expected to vary drastically among the strata. Also, the estimators are consistent under the ordinary asymptotic framework in which the number of strata is fixed and also under sparse asymptotics in which the number of strata grows with the sample size. Compared to the maximum likelihood estimators, simulations find that the MH type estimators perform better especially when each stratum has few observations. This article provides variances and covariances formulae for the local‐global odds ratios estimators and applies the bootstrap method to obtain a standard error for the global odds ratio estimator. At the end, we discuss possible ways of testing the homogeneity assumption.     

Peptides and multiple antigen peptides from Schistosoma mansoni glyceraldehyde 3-phosphate dehydrogenase: preparation, immunogenicity and immunoprotective capacity in C57BL/6 mice.

Four monoepitopic MAPs (MAP A, B, C and E) and one bis-diepitopic MAP B-E derived fromthe primary sequence of Schistosoma mansoni glyceraldehyde 3-phosphate dehydrogenase, previously tested in BALB/c mice, were examined for their immunogenicity and protective capacity in C57BL/6 mice. Despite multimerization into MAPs, MAP Aand MAP C were poorly immunogenic. In contrast toBALB/c mice, MAP E was non-immunogenic in C57BL/6 mice. Peptide B in the form of MAP B orbis-diepitopic MAPB-E elicited immune responses in C57BL/6 mice that were associated with a significant decrease in worm burden. The MAPs were prepared by the stepwise solid-phase peptide synthesis using Boc/Bzl chemistry, successfully purified on the RP-HPLC column and characterized by RP-HPLC, HPCE and MALDI-TOF MS techniques. A general strategy for MAPs purification is discussed here and the purification of MAP Band MAP E is documented in detail.     

Soil carbon sequestration and land‐use change: processes and potential

When agricultural land is no longer used for cultivation and allowed to revert to natural vegetation or replanted to perennial vegetation, soil organic carbon can accumulate. This accumulation process essentially reverses some of the effects responsible for soil organic carbon losses from when the land was converted from perennial vegetation. We discuss the essential elements of what is known about soil organic matter dynamics that may result in enhanced soil carbon sequestration with changes in land‐use and soil management. We review literature that reports changes in soil organic carbon after changes in land‐use that favour carbon accumulation. This data summary provides a guide to approximate rates of SOC sequestration that are possible with management, and indicates the relative importance of some factors that influence the rates of organic carbon sequestration in soil. There is a large variation in the length of time for and the rate at which carbon may accumulate in soil, related to the productivity of the recovering vegetation, physical and biological conditions in the soil, and the past history of soil organic carbon inputs and physical disturbance. Maximum rates of C accumulation during the early aggrading stage of perennial vegetation growth, while substantial, are usually much less than 100 g C m^?2 y^?1. Average rates of accumulation are similar for forest or grassland establishment: 33.8 g C m^?2 y^?1 and 33.2 g C m^?2 y^?1, respectively. These observed rates of soil organic C accumulation, when combined with the small amount of land area involved, are insufficient to account for a significant fraction of the missing C in the global carbon cycle as accumulating in the soils of formerly agricultural land.     

Diatoms for reconstructing palaeoenvironments and paleohydrology in tropical semi-arid zones

Palaeoenvironments are reconstructed from the diatom flora of Holocene swamp and lacustrine sediments which lie in closed depressions of the Chad basin (Niger).The geological and hydrological setting of the sedimentary profiles investigated is presented in section I. Three types of hydrological environments are considered: depressions which have been connected with L. Chad during the Holocene, small river-fed basins outside of the maximum extension of L. Chad, and depressions which have been mainly supplied by groundwater.Methods used for palaeoecological reconstruction are discussed (section II) on the basis of the present-day distribution of diatom species and communities in the investigated zones. Attention is drawn to the diversity of the habitats in a given waterbody, and on the potential effects of seasonality and water stratification on the composition of diatom assemblages contained in the sediments. Because of the spatial and temporal changes in diatom communities, the sediment may integrate a mixture of communities with different ecological requirements. Thus, mean values of individual ecological variables deduced from a fossil assemblage are not sufficient to characterize a palaeoenvironment.In section III, a classification of the palaeoenvironments is proposed. One attempts to distinguish the different communities contained in the fossil assemblages. The fossil communities are compared to diatom populations living today in the studied zones, or in other African sectors when no regional analogue has been found, and for which ecological conditions are known. This allows environmental characteristics to be inferred from sedimentary profiles. At a given time, the palaeosystems show the same ecological diversity as the modern ones.The main status of the palaeoenvironmental evolution are then drawn for each stratigraphical profile (section IV), for an understanding of their causes. The major climatic tendancies affecting intertropical Africa have been chiefly responsible for the presence or absence of aquatic environments in the closed depressions. Superimposed to that, the diversity and the evolution of the individual palaeoecosystems have been controlled by local topographical and hydrological factors (origin of water, permeability of lake floor. . ). This is a common situation for waterbodies lying in tropical arid and semi-arid zones, and especially for palaeolakes associated to groundwater circulations. Therefore, palaeolimnological data can hardly serve as direct and accurate climatic indicators, if they are not corrected for the effects of local hydrology.     

Contributions to the knowledge of African rotifers: Rotifers from Mauritania (W.-Africa)

The number of Rotifer taxa known from Mauritania, is raised from 8 to 90. 61% of these are cosmopolitan, 1 is temperate — boreal, 18% are thermophilic and 20% are tropicopolitan. Most of them are widely distributed in Africa, but some species have limited distributions. The presence of Keratella testudo and Wolga spinifera is remarkable and is probably related to the unusual climatic conditions in the SW Sahara. One phenotype or forma is new to science.     

A new species of the genusLotus (Fabaceae) in North Africa

A new species,Lotus digii, has been found in Morocco growing on the coastal sandy soils. Further localities are from Algeria and Egypt. It should be expected also in Libya.