定量稳定性同位素探针技术及其在微生物生态学研究中的应用

定量稳定性同位素探针技术(qSIP)是将生态系统中微生物分类性状与代谢功能联系起来的有效工具,能够定量测定特定环境中单个微生物类群暴露于同位素示踪剂后微生物代谢活动或生长速率.qSIP技术采用定量PCR与高通量测序技术并结合稳定同位素探针技术(SIP),通过向环境样品添加标记底物进行培养,提取微生物生物标记物,利用超高...     

Using food network unfolding to evaluate food–web complexity in terms of biodiversity: theory and applications

Food–web complexity often hinders disentangling functionally relevant aspects of food–web structure and its relationships to biodiversity. Here, we present a theoretical framework to evaluate food–web complexity in terms of biodiversity. Food network unfolding is a theoretical method to transform a complex food web into a linear food chain based on ecosystem processes. Based on this method, we can define three biodiversity indices, horizontal diversity (D_H), vertical diversity (D_V) and range diversity (D_R), which are associated with the species diversity within each trophic level, diversity of trophic levels, and diversity in resource use, respectively. These indices are related to Shannon's diversity index (H′), where H′ = D_H + D_V ? D_R. Application of the framework to three riverine macroinvertebrate communities revealed that D indices, calculated from biomass and stable isotope features, captured well the anthropogenic, seasonal, or other within‐site changes in food–web structures that could not be captured with H′ alone.     

科尔沁沙地丘间低地樟子松人工林水分利用来源的稳定同位素解析

20世纪50年代以来,樟子松(Pinus sylvestris var.mongolica在中国北方干旱半干旱地区沙地广泛引种.近年来一些早期引种的樟子松人工林出现了早衰现象.分析生境水分条件变化、判断樟子松采取何种水分利用策略对于认识其早衰现象很有裨益.因此,本研究利用稳定同位素示踪技术,研究了科尔沁沙地东南缘固定沙丘丘间低地30年生樟子松人工林的水分来源及其利用的季节动态,分析了降水和土壤水分变化对樟子松水分利用的影响,阐明了樟子松与伴生植物(黄柳Salix gordeieril)在水分来源方面的异同.结果表明,樟子松及其主要伴生植物黄柳枝条水的稳定18O同位素组成(δ18O)存在明显的季节变化;樟子松的水分来源主要来自20～ 40 cm或更深土层;樟子松和主要伴生植物黄柳之间存在明显的水分竞争,后者比樟子松先行利用最近较强降水(如降水量＞10 mm),从而影响樟子松水源的补给.本研究对于揭示沙地樟子松衰退与水分利用策略的关系具有重要意义.     

6000 years of environmental changes recorded in Blue Lake, South Australia, based on ostracod ecology and valve chemistry

A 4 m long core taken from the freshwater Blue Lake crater near the township of Mount Gambier in southeastern South Australia provided a high-resolution palaeoclimatic record for the last six millennia. Accelerator Mass Spectrometry (AMS) radiocarbon (¹⁴C) dates were obtained from organic plant fibres and biogenic carbonates from the laminated sequence of the core and from a modern water sample. Large discrepancies between the radiocarbon ages determined from plant fibres and biogenic carbonates indicate the presence of a time-variable lacustrine reservoir, which is consistent with what is known of the lake's hydrology.Ostracod assemblages, associated with stable isotope (δ¹³C, δ¹⁸O) analyses and, in combination with Mg/Ca, Sr/Ca and Na/Ca analyses done on ostracod valves, infer salinity, temperature and water level changes in Blue Lake over the last 6 millenia. The influence of local aquifers through time has also been determined from the Na/Ca of ostracod valves. Approximately 900 year cycles are evident in the δ¹³C record from 5.4 ka to 1.8 ka.The history of Blue Lake records an initial period of high hydrological variability around 6 ka, becoming increasingly deeper as groundwater flowed into the basin. By 4 ka, the lake had reached steady state with the lake level fluctuating by as much as 9 m, although significant geochemical variations represent temperature fluctuations until European settlement near the lake in 1839.     

Diet composition and selection of Père David's deer in Hubei Shishou Milu National Nature Reserve,China

Hubei Shishou Milu National Nature Reserve is an ideal place to restore the wild population of Père David's deer (Elaphurus davidianus). Understanding foraging ecology and diet composition is essential for assessing population development or establishing long-term effective conservation measures for endangered species. However, little is known about the diet composition of Père David's deer and its diet selection mechanism. In this study, we used stable isotope technology to investigate the diet composition of Père David's deer according to various tissues (i.e., fur, muscle, liver, heart, and feces) and seasons, and evaluated the correlation between the nutrient composition of plants and diet composition. Bayesian isotope analysis showed that the autumn and winter diet estimated by fur and fecal samples indicated a diet dominated by C₃ grasses (42.7%–57.2%, mean), while the summer diet estimated by muscle and liver samples was dominated by C₃ forbs (30.9%–41.6%, mean). The Pearson correlation test indicated that the contribution of winter diet composition reflected by fur and fecal samples was associated with correlations with crude protein (r = .666, p < .01) and soluble sugars (r = .695, p < .01). The results indicated that crude protein and soluble sugars were important factors influencing the winter diet selection of Père David's deer. In the context of the current reintroduction facing many challenges, such as habitat fragmentation, wetland degradation, and human disturbance, comprehensively evaluating the diet selection mechanism of Père David's deer under different resource specificities and temporal changes should be considered in the future.     

Quantification of hepatic carbohydrate metabolism in conscious mice using serial blood and urine spots

In vivo studies of hepatic carbohydrate metabolism in (genetically modified) conscious mice are hampered by limitations of blood and urine sample sizes. We developed and validated methods to quantify stable isotope dilution and incorporation in small blood and urine samples spotted onto filter paper. Blood glucose and urinary paracetamol-glucuronic acid were extracted from filter paper spots reproducibly and with high yield. Fractional isotopomer distributions of glucose and paracetamol-glucuronic acid when extracted from filter paper spots were almost identical to those isolated from the original body fluids. Rates of infusion of labeled compounds could be adjusted without perturbing hepatic glucose metabolism. This approach was used in mice to find the optimal metabolic condition for the study of hepatic carbohydrate metabolism. In fed mice, no isotopic steady state was observed during a 6-h label-infusion experiment. In 9-h-fasted mice, isotopic steady state was reached after 3 h of label infusion and important parameters in hepatic glucose metabolism could be calculated. The rate of de novo glucose-6-phosphate synthesis was 143 +/- 17 micromol kg(-1) min(-1) and partitioning to plasma glucose was 79.0 +/- 5.2%. In 24-h-fasted mice, abrupt changes were noticed in whole body and in hepatic glucose metabolism at the end of the experiment.     

环境微生物群落功能研究的新方法和新策略

微生物群落在驱动生物地球化学循环中扮演着重要角色,传统的研究方法可对微生物群落进行遗传结构的解析,但不能有效地与功能研究耦联.概述了近年发展起来的基于核酸和蛋白质水平的分子生物学新方法--环境mRNA 和 rRNA同时荧光原位杂交(FISH)、寡核苷酸微阵列技术(Oligonucleotide Microarray)、 稳定性同位素联合宏基因组学(SIP-enabled Metagenomics)和环境蛋白质组学(Metaproteomics)在环境微生物群落功能研究中的应用,并且对其发展趋势进行了分析和展望.     

同位素示踪技术在丛枝菌根真菌生态学研究中的应用

丛枝菌根(arbuscular mycorrhizal,AM)真菌是生态系统中重要的土壤微生物之一。AM真菌菌丝体网络是由AM真菌菌丝体在土壤生态系统中连接两株或两株以上植物根系所形成的菌丝体网络。随着菌根学研究的深入,如何直观的揭示AM真菌的生态学功能已经成为相关领域关注的热点问题。研究发现,利用同位素示踪技术可以开展AM真菌与宿主植物对土壤矿质营养的吸收、转运等方面的研究,以及菌丝体网络对不同宿主植物之间营养物质的分配研究和AM真菌在生态系统生态学中的功能研究。基于此,为了阐明同位素示踪技术在AM真菌研究中的价值,围绕菌根学最新研究进展,系统回顾了利用同位素示踪技术探究AM共生体对不同元素吸收和转运的机制、同位素示踪技术在AM真菌菌丝体网络研究中的价值和利用同位素示踪技术研究AM真菌在生态系统中的功能,为AM真菌生态学功能的研究提供理论基础,并对本领域未来的研究方向和应用前景进行展望。     

Proteomics in Drosophila melanogaster.

To be able to understand cellular mechanisms, we require fully integrated data sets combining information about gene expression, protein expression, post-translational modification states, sub-cellular location and complex formation. Proteomics is a very powerful technique that can be applied to interrogate changes at the protein level. Studying this effectively requires specialised facilities within research institutes. Here, we describe the setting up and operation of such a facility, providing a resource for the Arabidopsis and Drosophila research communities.     

陕甘宁地区降水稳定同位素特征及水汽来源

依据全球大气降水稳定同位素观测网络(GNIP)和已有研究中陕甘宁地区的大气降水氢氧稳定同位素资料,并结合相关气象数据,分析了陕甘宁地区大气降水氧稳定同位素的时空分布特征及其影响因子,并建立了大气降水线方程.结果表明:3省大气降水线的斜率、截距由小到大依次为:甘肃、陕西、宁夏,且均小于全球大气降水线方程的斜率、截距,表明3省的降水过程受蒸发作用影响程度沿宁夏、陕西、甘肃增强;陕甘宁地区大气降水中δ18O值在时间变化上,表现为夏秋季节富集、冬春季节贫化,从空间分布来看,由西北至东南,加权平均δ18O值呈减小趋势;3省降水中δ18O温度效应显著,但不存在降水量效应,这体现了中高纬度大陆性气候的特征;高程效应的定量关系为-0.12‰·(100 m)^-1,纬度效应更显著(纬度每增加1°,降水中δ18O相应贫化0.27‰);采用HYSPLIT模型对各站点的水汽来源进行追踪,气团聚类轨迹表明,夏半年主要有来自孟加拉湾的水汽、东南季风水汽和西风带水汽,冬半年以西风带水汽为主.