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21.
L. Banci I. Bertini K. L. Bren M. A. Cremonini H. B. Gray C. Luchinat P. Turano 《Journal of biological inorganic chemistry》1996,1(2):117-126
The availability of NOE constraints and of the relative solution structure of a paramagnetic protein permits the use of pseudocontact
shifts as further structural constraints. We have developed a strategy based on: (1) determination of the χ tensor anisotropy
parameters from the starting structure; (2) recalculation of a new structure by using NOE and pseudocontact shift constraints simultaneously; (3) redetermination of the χ tensor anisotropy parameters from the new structure,
and so on until self-consistency. The system investigated is the cyanide derivative of a variant of the oxidized Saccharomyces cerevisiae iso-1-cytochrome c containing the Met80Ala mutation. The structure has been substantially refined. It is shown that the analysis of the deviation
of the experimental pseudocontact shifts from those calculated using the starting structure may be unsound, as may the simple
structure refinement based on the pseudocontact shift constraints only.
Received: 11 July 1995 / Accepted: 30 October 1995 相似文献
22.
用Aedans标记肌动蛋白单体G-Actin上Cys374残基作为探针,研究了稀土离子Ce~(3+)与G-Actin的结合及引起的微构象变化。Ce~(3+)在低浓度(Ce~(3+)/Actin摩尔比<1)和Ca~(2+)竞争G-Actin上二价离子的高亲合位点。Ce~(3+)取代Ca~(2+)引起Aedans荧光强度增强与Mg~(2+)取代Ca~(2+)的结果相同。Ce~(3+)/Actin>l则导致Aedans荧光强度下降。说明Ce~(3+)在高低两种浓度条件下结合的位点及对Cvs374的微构象的影响不同。时间分辩测得的Aedans荧光寿命也支持这一结论。CD谱结果表明Ce~(3+)/Actin<0.4,Actin的二级结构增加,大于0.4又导致其失去。Ce~(3+)-Actin在有/无游离ATP时用聚合液诱导的聚合结果表明,无游离ATP时,极低浓度Ce~(3+)促进聚合,高浓度虽有促进但有所减弱;有游离ATP时,Ce~(3+)/Actin在实验范围内促进聚合。 相似文献
23.
Summary Conformational preferences of secretin as a model peptide have been analyzed by CD and IR spectroscopy in reverse micelles of AOT/isooctane/water and compared to those in aqueous TFE, in SDS micelles and in DMPG vesicles. Among the systems examined, reverse micelles and phospholipid vesicles displayed almost identical conformational equilibria. Very high lipid-to-peptide ratios can be obtained in reverse micelles with full retention of optical transparency, even at millimolar peptide concentrations, thus indicating this system to be an interesting mimic of cell membrane environments for spectroscopic analysis of bioactive peptide conformations.Abbreviations TFE
trifluoroethanol
- SDS
sodium dodecyl sulfate
- DMPG
dimyristoylphosphatidylglycerol
- AOT
bis(2-ethylhexyl)sulfosuccinate
- CMC
critical micellar concentration
- VIP
vasoactive intestinal peptide 相似文献
24.
G. Vertuani M. Boggian A. Breveglieri G. Cavicchioni S. Spisani A. Scatturin 《Amino acids》1995,9(4):375-383
Summary In order to investigate the proper peptide backbone conformation able to elicit a biological activity, HCO-Met-Pro-Phe-OMe, HCO-Met-[COO]Leu-Phe-OMe, and HCO-Met-OLeu-Phe-OMe, analogues of the prototypical chemotactic peptide HCO-Met-Leu-Phe-OMe, were studied by CD and IR techniques. The results obtained comparing biological and conformational data evidence the critical presence of (i) the NH group at position 2, (ii) a rather flexible backbone, (iii) the chemical structure of the central residue which can affect the stability of a possible active conformer. 相似文献
25.
钙调神经磷酸酶在胍变性过程中活力及构象变化的比较 总被引:1,自引:0,他引:1
钙调神经磷酸酶(CaN)在盐酸胍溶液中的内源荧光、远紫外CD谱及剩余活力的变化提示:CaN的酶活力在胍浓度为0.5mol/L左右可完全丧失,同时伴有内源荧光强度的下降,333nm最大发射峰的红移(提示了色氨酸和酪氨酸残基的暴露)。比较不同胍浓度下牛脑CaN的失活与整体构象变化,表明酶的失活先于整体构象变化。在0.6mol/L胍溶液中,内源荧光变化的动力学过程只能测出一相,而酶失活的动力学过程为快、慢两相,快相动力学速度常数比整体构象变化速度常数大1-2个数量级,慢相失活速度常数与整体构象变化速度常数相近。提示低浓度胍可引起该酶的完全失活,活性部位的空间构象比整个酶分子的构象更易受到变性剂的扰乱。 相似文献
26.
27.
Theoretical investigations, using semi-empirical potential functions have been carried out to predict the favoured conformations
of the terminal dissaccharide fragments of various sialyloligosaccharides. The proposed conformational similarity for these
fragments has been correlated to the binding specificity of neuraminidases. These calculations predict that bacterial neuraminidases
have a binding site which can accommodate only two sugar residues and virus neuraminidases have a binding site which can accommodate
more than two sugar residues. 相似文献
28.
M D Hirsch T L O'Donohue R Wilson T K Sawyer V J Hruby M E Hadley W L Cody J J Knittel J N Crawley 《Peptides》1984,5(6):1197-1201
Previous studies have identified the (4-10) heptapeptide sequence as the central core of alpha-MSH/ACTH peptides required for mediation of important biological activities. In the present study, the structure-activity relationships of Nle4-substituted and Cys4,Cys10-bridged cyclic alpha-MSH analogues, which were previously shown to exhibit a wide range of melanotropic potencies from weak agonism to super potency, were examined for grooming behavioral activity in the rat following intracerebroventricular injections. The results showed that stepwise C-terminal elongation of the linear Nle4-substituted Ac-alpha-MSH4-10-NH2 increased grooming potencies of the peptides in a manner similar to their actions on melanocytes. The most interesting finding was the observation that cyclization of the inactive linear "central (4-10) core" of alpha-MSH (Ac-alpha-MSH4-10) to form Ac-[Cys4,Cys10]-alpha-MSH4-10-NH2 resulted in a super potent agonist in the grooming assay. However, while cyclization of the (4-10) heptapeptide produced potent agonists on grooming behavior, the structure-activity relationships were different than the frog skin bioassay. These findings support the hypothesis that appropriate structural and confirmational modifications of alpha-MSH-related peptides can produce profound effects on the bioactivities of the peptides, and suggest that different structural-conformational requirements exist for alpha-MSH interactions with its various receptors. 相似文献
29.
Summary Fox and Woese (1975a) have shown that a model of 5S RNA secondary structure similar to the one originally derived forChlorella 5S RNA can be generalized with relatively minor variations to all sequenced 5S RNA molecules, i.e. that corresponding base paired regions can be formed at approximately the same positions. We present experimental data in favour of this hypothesis and show that the points at which ribonucleases T1, T2 and pancreatic ribonuclease cleave six different 5S RNA molecules under mild conditions (high ionic strength, low temperature, low RNAase concentration) nearly always fall in the proposed single-stranded regions. We conclude that this model is a good approximation to the conformation of 5S RNA in solution. 相似文献
30.
Summary Sequence data from methionine initiator and phenylalanine transfer RNAs were used to construct phylogenetic trees by the maximum parsimony method. Although eukaryotes, prokaryotes and chloroplasts appear related to a common ancestor, no firm conclusion can be drawn at this time about mitochondrial-coded transfer RNAs. tRNA evolution is not appropriately described by random hit models, since the various regions of the molecule differ sharply in their mutational fixation rates. Hot mutational spots are identified in the TC, the amino acceptor and the upper anticodon stems; the D arm and the loop areas on the other hand are highly conserved. Crucial tertiary interactions are thus essentially preserved while most of the double helical domain undergoes base pair interchange. Transitions are about half as costly as transversions, suggesting that base pair interchanges proceed mostly through G-U and A -C intermediates. There is a preponderance of replacements starting from G and C but this bias appears to follow the high G + C content of the easily mutated base paired regions. 相似文献