柱花草RAPD反应体系的建立及其8个品种遗传多样性分析

采用两种不同的方法分别从柱花草嫩叶及种子萌发芽中提取了高质量的DNA ,并对柱花草RAPD反应中的各组分浓度及热循环因素进行优化 ,建立了柱花草RAPD反应的最佳条件。在此基础上 ,用 2 0条随机引物对 8个柱花草品种进行了RAPD扩增 ,结果表明 ,其多样性达 5 1 .9% ,品种间的遗传相似系数在 0 .5 3～0 .88之间 ;根据非加权成对平均数法 (UPGMA)进行分类 ,获得了品种聚类树形图 ,8个柱花草品种均被明显分开。     

Fe- and S-Metabolizing Microbial Communities Dominate an AMD-Contaminated River Ecosystem and Play Important Roles in Fe and S Cycling

Indigenous Fe- and S-metabolizing bacteria play important roles both in the formation and the natural attenuation of acid mine drainage (AMD). Due to its low pH and Fe-S-rich waters, a river located in the Dabaoshan Mine area provides an ideal opportunity to study indigenous Fe- and S-metabolizing microbial communities and their roles in biogeochemical Fe and S cycling. In this work, water and sediment samples were collected from the river for physicochemical, mineralogical, and microbiological analyses. Illumina MiSeq sequencing indicated higher species richness in the sediment than in the water. Sequencing also found that Fe- and S-metabolizing bacteria were the dominant microorganisms in the heavily and moderately contaminated areas. Fe- and S-metabolizing bacteria found in the water were aerobes or facultative anaerobes, including Acidithiobacillus, Acidiphilium, Thiomonas, Gallionella, and Leptospirillum. Fe- and S-metabolizing bacteria found in the sediment belong to microaerobes, facultative anaerobes, or obligatory anaerobes, including Acidithiobacillus, Sulfobacillus, Thiomonas, Gallionella, Geobacter, Geothrix, and Clostridium. Among the dominant genera in the sediment, Geobacter and Geothrix were rarely detected in AMD-contaminated natural environments. Canonical correspondence analysis indicated that pH, S, and Fe concentration gradients were the most important factors in structuring the river microbial community. Moreover, a scheme explaining the biogeochemical Fe and S cycling is advanced in light of the Fe and S species distribution and the identified Fe- and S-metabolizing bacteria.     

A conceptual model of organo-mineral interactions in soils: self-assembly of organic molecular fragments into zonal structures on mineral surfaces

In this paper, we propose a structure for organo-mineral associations in soils based on recent insights concerning the molecular structure of soil organic matter (SOM), and on extensive published evidence from empirical studies of organo-mineral interfaces. Our conceptual model assumes that SOM consists of a heterogeneous mixture of compounds that display a range of amphiphilic or surfactant-like properties, and are capable of self-organization in aqueous solution. An extension of this self-organizational behavior in solution, we suggest that SOM sorbs to mineral surfaces in a discrete zonal sequence. In the contact zone, the formation of particularly strong organo-mineral associations appears to be favored by situations where either (i) polar organic functional groups of amphiphiles interact via ligand exchange with singly coordinated mineral hydroxyls, forming stable inner-sphere complexes, or (ii) proteinaceous materials unfold upon adsorption, thus increasing adhesive strength by adding hydrophobic interactions to electrostatic binding. Entropic considerations dictate that exposed hydrophobic portions of amphiphilic molecules adsorbed directly to mineral surfaces be shielded from the polar aqueous phase through association with hydrophobic moieties of other amphiphilic molecules. This process can create a membrane-like bilayer containing a hydrophobic zone, whose components may exchange more easily with the surrounding soil solution than those in the contact zone, but which are still retained with considerable force. Sorbed to the hydrophilic exterior of hemimicellar coatings, or to adsorbed proteins, are organic molecules forming an outer region, or kinetic zone, that is loosely retained by cation bridging, hydrogen bonding, and other interactions. Organic material in the kinetic zone may experience high exchange rates with the surrounding soil solution, leading to short residence times for individual molecular fragments. The thickness of this outer region would depend more on input than on the availability of binding sites, and would largely be controlled by exchange kinetics. Movement of organics into and out of this outer region can thus be viewed as similar to a phase-partitioning process. The zonal concept of organo-mineral interactions presented here offers a new basis for understanding and predicting the retention of organic compounds, including contaminants, in soils and sediments.     

广西木论喀斯特森林土壤养分水平与植被及地形的关系

研究了广西木论喀斯特森林原生植被和次生植被的土壤养分特征,测定了陡坡、缓坡、洼地3种主要地形内林地0～5 cm表层土壤中的有机质(SOM)、氮、磷、钾含量,以及它们在石土面、土面两类主要小生境间的差异.结果表明:林分成熟度高、优势种不明显的原生林积累了高水平的SOM,缓坡石土面最高,达345 g kg-1,洼地的含量较低,但仍在80 g kg-1以上;土壤全氮(TN)、碱解氮(AN)含量也较高.以红背山麻杆(Alchornea trewioides)、广西野桐(Mallotus conspuyrcatus)、伞花木(Eurycorymbus cavderiei)等为优势种的次生林,物种多样性较原生林低,SOM、TN、AN含量也低,缓坡石土面和土面小生境的SOM分别为110 g kg-1和77 g kg-1,是原生林的32%和35%,下降幅度最大,其次为陡坡,而洼地的差异不明显.全磷(TP)、有效磷(AP)、全钾(TK)、有效钾(AK)含量在两林型间差异无明显规律.原生林和次生林土壤养分含量(除TK外)以缓坡>陡坡>洼地;但次生林中三者间无显著差异.同类型样地内小生境土壤养分含量(除TK外)均为石土面含量高于土面.     

Species Composition, Abundance, and Distribution of Seabirds along the Northeastern Coast of Sakhalin

Seabirds were counted in September 1998 from the research vessel Professor Khromovand a motorboat in Pil'tun and Lunskii bays and in the contiguous areas of the eastern Sakhalin shelf. Data on the species composition, abundance, and distribution of seabirds are presented. A fairly high species diversity and significantly high density of seabirds were recorded in Pil'tun and Lunskii bays, which are the main areas where they concentrate during the summer months.     

Association mapping of cold‐induced sweetening in potato using historical phenotypic data

In this study, historical phenotypic data from a potato breeding programme were used with an association mapping approach to identify alleles of candidate genes associated with cold‐induced sweetening of potato. Molecular marker analysis was used to determine allelic variation of candidate genes potentially involved in cold‐induced sweetening. Variations in the UDP‐glucose pyrophosphorylase (UGPase, EC 2.7.7.9) and apoplastic invertase genes (EC 3.2.1.26) were significantly associated with cold‐induced sweetening, and a possible interaction of apoplastic invertase and apoplastic invertase inhibitor was identified. This demonstrates that breeding programme phenotypic data collected over multiple years and environments can be used successfully with pedigree information for association mapping. It also confirms that the UGPase and apoplastic invertase markers are transferable across breeding programmes with distinct germplasm.     

连作对三七种子萌发及种苗生长的影响

为进一步明确三七的连作效应,以不同种植年限及不同空间分布的土壤为栽培基质,研究了连作对三七种子萌发及种苗生长的影响。结果表明:连作使三七种子萌发的最大速度增加,种子的发芽势变化不大,而发芽率、发芽指数和快速发芽期则呈明显降低或变短的趋势;与根区外土相比,根区土和根区下土使三七种子的发芽势、发芽率和发芽指数显著降低,对种子萌发的最大速度也有降低的作用;种植1年三七的土壤(1年土)对后茬三七种苗的生长并无明显障碍效应,2年土比3年土具有更强的抑制三七种苗生长的作用。连作对三七种子萌发及种苗生长均会产生明显的障碍效应,自毒作用可能只是造成三七连作障碍的原因之一。     

Quantitative Metaproteomics and Activity-based Protein Profiling of Patient Fecal Microbiome Identifies Host and Microbial Serine-type Endopeptidase Activity Associated With Ulcerative Colitis

The gut microbiota plays an important yet incompletely understood role in the induction and propagation of ulcerative colitis (UC). Organism-level efforts to identify UC-associated microbes have revealed the importance of community structure, but less is known about the molecular effectors of disease. We performed 16S rRNA gene sequencing in parallel with label-free data-dependent LC-MS/MS proteomics to characterize the stool microbiomes of healthy (n = 8) and UC (n = 10) patients. Comparisons of taxonomic composition between techniques revealed major differences in community structure partially attributable to the additional detection of host, fungal, viral, and food peptides by metaproteomics. Differential expression analysis of metaproteomic data identified 176 significantly enriched protein groups between healthy and UC patients. Gene ontology analysis revealed several enriched functions with serine-type endopeptidase activity overrepresented in UC patients. Using a biotinylated fluorophosphonate probe and streptavidin-based enrichment, we show that serine endopeptidases are active in patient fecal samples and that additional putative serine hydrolases are detectable by this approach compared with unenriched profiling. Finally, as metaproteomic databases expand, they are expected to asymptotically approach completeness. Using ComPIL and de novo peptide sequencing, we estimate the size of the probable peptide space unidentified (“dark peptidome”) by our large database approach to establish a rough benchmark for database sufficiency. Despite high variability inherent in patient samples, our analysis yielded a catalog of differentially enriched proteins between healthy and UC fecal proteomes. This catalog provides a clinically relevant jumping-off point for further molecular-level studies aimed at identifying the microbial underpinnings of UC.