A new pencil beam model for photon dose calculations in heterogeneous media

The pencil beam method is commonly used for dose calculations in intensity-modulated radiation therapy (IMRT). In this study, we have proposed a novel pencil model for calculating photon dose distributions in heterogeneous media. To avoid any oblique kernel-related bias and reduce computation time, dose distributions were computed in a spherical coordinate system based on the pencil kernels of different distances from source to surface (DSS). We employed two different dose calculation methods: the superposition method and the fast Fourier transform convolution (FFTC) method. In order to render the superposition method more accurate, we scaled the depth-directed component by moving the position of the entry point and altering the DSS value for a given beamlet. The lateral components were thus directly corrected by the density scaling method along the spherical shell without taking the densities from the previous layers into account. Significant computation time could be saved by performing the FFTC calculations on each spherical shell, disregarding density changes in the lateral direction. The proposed methods were tested on several phantoms, including lung- and bone-type heterogeneities. We compared them with Monte Carlo (MC) simulation for several field sizes with 6 MV photon beams. Our results revealed mean absolute deviations <1% for the proposed superposition method. Compared to the AAA algorithm, this method improved dose calculation accuracy by at least 0.3% in heterogeneous phantoms. The FFTC method was approximately 40 times faster than the superposition method. However, compared with MC, mean absolute deviations were <3% for the FFTC method.     

Ecological and phylogenetic determinants of life-history patterns among ten loricariid species

We analysed the influence of ecological factors, phylogenetic history and trade-offs between traits on the life-history variation among 10 loricariid species of the middle Paraná River. We measured eight life-history variables and classified the life-history strategies following the equilibrium–periodic–opportunistic (EPO) model. Principal-component analysis of life-history traits segregated species along a gradient from small opportunistic (low fecundity, low parental investment) to large equilibrium (low-medium fecundity, high parental investment) species. A clear periodic strategist was absent in the analysed assemblage. Variation partitioning by canonical phylogenetic ordination analysis showed both a component of variation uniquely explained by phylogenetic history (PH; 32.2%) and a component shared between PH and ecological factors (EF; 37%). The EPO model is a useful tool for predicting correlations among life-history traits and understanding potential demographic responses of species to environmental variation. Life-history patterns observed throughout Loricariidae suggests that this family has diversified across all three endpoint strategies of the EPO model. Our study indicates that evolutionary lineage affiliation at the level of subfamily can be a strong predictor of the life-history strategy used by each species.     

矮化苹果氮肥施用技术

以8年生烟富3/M26/平邑甜茶为试材,采用¹⁵N同位素示踪技术,研究不同施氮方式(Ⅰ:春季1次性施氮,Ⅱ:分2次施氮,Ⅲ:集约技术施氮,即氮肥减量和分次施氮)对烟富3/M26/平邑甜茶¹⁵N-尿素吸收、利用、损失和果实品质的影响.结果表明:处理Ⅲ植株叶片的叶面积、叶绿素含量(SPAD)、光合速率(P_n)、叶片全氮含量和生物量(果实除外)显著高于处理Ⅰ和处理Ⅱ,植株根冠比也显著增加.处理Ⅲ显著提高了叶片的保护酶活性(超氧化物歧化酶、过氧化物酶和过氧化氢酶),降低了叶片丙二醛(MDA)含量.3个处理各器官从肥料中吸收分配到的¹⁵N量对该器官全氮量的贡献率(Ndff)表现一致,果实的Ndff值最大,其次是一年生枝、叶片和根,且各器官的Ndff值均以处理Ⅲ最大.在果实成熟期,处理Ⅲ的单株总氮含量为93.0 mg·kg^-1,显著高于处理Ⅰ(70.2 mg·kg^-1)和处理Ⅱ(81.9 mg·kg^-1);处理Ⅲ的¹⁵N肥料利用率为33.6%,显著高于处理Ⅰ(20.4%)和处理Ⅱ(26.0%);而¹⁵N损失率为46.9%,显著低于处理Ⅰ(56.5%)和处理Ⅱ(52.9%).不同施氮方式下植株的平均单果质量、可溶性固形物、硬度、可溶性糖、可滴定酸、糖酸比均存在显著差异,且均以处理Ⅲ最高,其次是处理Ⅱ,处理Ⅰ最低.     

Heterodinuclear Cu(II)Zn(II) complexes: F NMR as a versatile tool to control the synthesis

The dinucleating ligands 2,6-bis[(bis(2-pyridylmethyl)amino)methyl]-4-methylphenol (H-BPMP) and 2,6-bis[(bis(2-pyridylmethyl)amino)methyl]-4-fluorophenol (H-BPFP) were used to synthesize heterodinuclear (μ-phenoxo)(μ-hydroxo) Cu(II)Zn(II) complexes. The labeled ligand with a fluorine atom allows the use of ¹⁹F NMR spectroscopy, which turned to be a rapid and powerful tool to tune the synthesis of the heterodinuclear paramagnetic complex [CuZnBPFP(μOH)](ClO₄)₂ and avoid mixing of complexes with statistical distribution. When applied to the non-fluorinated ligand, this experimental procedure leads to prepare and isolate easily the complex [CuZnBPMP(μOH)](ClO₄)₂. The X-ray structure is described.     

The absolute configuration of prunioside A from Spiraea prunifolia and biological activities of related compounds

The stereochemistry of prunioside A isolated from Spiraea prunifolia was determined by chemical transformations and NMR spectral data analysis. The configurations at C-5 and C-6 were determined to be 5S and 6R by application of the modified Mosher's method, CD analysis, and 13C NMR spectroscopic data analysis of an acetonide derivative. Other compounds related to prunioside A have inhibitory effects on the synthesis of nitric oxide in LPS-stimulated macrophage-like RAW 264.7 cells.     

基于GIS的滨海盐渍化农田土壤空间变异及其分区管理

针对滨海盐渍化农田盐碱瘠薄、土壤属性空间变异大、粗放管理效益低的现实,研究管理分区精准划分方法,采取差异化措施,提升盐渍化土地利用水平。该文以无棣县农田为研究区,采用网格法结合土地利用现状定点野外采样、室内化验分析获取土壤属性数据,运用ArcGIS 10.2地统计方法分析土壤属性的空间变异特征;在MATLAB R2016a中采用模糊c-均值聚类法（FCM）计算各样点的模糊隶属度,通过插值预测模糊隶属度的空间分布,基于最大隶属度原则进行分区;通过变异性分析和最小极差法（LSR）差异显著性检验,对分区结果进行精度验证。结果表明：无棣县农田土壤总体呈轻中度盐渍化,有效氮含量偏低,有机质、有效磷含量中等,速效钾含量较高;有机质、有效氮、有效磷、速效钾和含盐量呈中等变异性（变异系数25.0%-52.3%）,空间变异性较大,应分区调控;速效钾、含盐量和pH的块金效应值小于25%,主要受土壤质地、地下水矿化度等结构因素影响,有机质、有效氮和有效磷的块金效应值在50%-75%之间,受耕作方式、施肥等人为因素影响较大。将全县农田划分为3类管理区,估算面积分别为2.56万hm²、1.76万hm²、3.24万hm²;各分区土壤养分变异系数分别为23.9%-51.5%、15.9%-50.3%、14.7%-33.0%,检验结果表明各分区间差异显著,而各分区内部变异性明显低于未分区。管理分区与土壤属性空间分布特征具有较高的拟合度,分区结果可以作为差异化管理的作业单元。研究结果为各分区内部统一、不同分区间差异化管理提供了依据,研究有助于推进滨海盐渍化农田精准化管理水平的提高。     

植物种群空间分布格局测定的新方法：摄影定位法

 在种群空间分布格局研究中,取样方法至关重要。受点格局分析方法及地理信息系统原理与方法的启示,该文论述了一种新的测定方法：摄影定位法,即在典型草原恢复样地中选取10 m×10 m的群落片段,用竹签将其分成400个50 cm×50 cm的亚样方,应用摄影技术将这400个亚样方内所有的物体按一定的顺序拍摄下来,借助地理信息系统技术准确地确定每株（丛）植物的着生点位置,实现种群格局的测定,并通过威尔柯克森符号秩检验,表明该种方法可行。在使用此法进行种群格局测定时,工作效率大幅度提高, 且在典型草原群落种群格局测定中得到很好的效果。应用该测定方法对种群格局进行动态监测,不仅可以测定每个种群的格局动态变化过程,而且可以监测每株植物的生死过程以及种间的相互关系,进而从种群格局角度去认识演替过程,从而把演替的群落、种群尺度监测细化到个体水平。     

气候变暖背景下青藏高原草本植物物候变化空间换时间预测

气候变暖背景下的植物物候变化广受关注, 然而常用的植物物候变化预测模型未充分考虑植物对环境的适应性, 给预测结果带来了较大的不确定性。该文基于2002-2011年青藏高原10个站点的地面物候观测资料以及年平均气温数据, 对空间换时间模型预测车前(Plantago asiatica)和蒲公英(Taraxacum mongolicum)各主要物候事件(展叶始期、开花始期和黄枯普遍期)变化的可行性及其在升温背景下的变化规律进行了分析。首先利用不同海拔高度的气温和物候事件分别与地理因子(经度、纬度和海拔)建立多元线性回归模型, 然后在此基础上剔除经度和纬度的影响, 单独考察海拔变化所引起的气温与植物物候变化, 最后以海拔高度作为桥梁来考察物候变化与温度变化的关系。结果表明, 采用各站点对应的海拔高度来模拟年平均气温空间差异的R²均大于0.89, 表明海拔梯度可以用来反映时间尺度下的年际温度变化; 车前和蒲公英各物候事件发生日期拟合值均与海拔高度变化关系显著, R²均大于0.70, 表明海拔变化是影响它们各物候事件变化的主要地理因子; 在物候事件发生日期拟合值和年平均气温拟合值的回归方程中, R²均大于0.93, 说明基于不同海拔高度模拟得到的年平均气温变化可以对时间尺度上车前和蒲公英的物候事件变化进行预测。空间换时间预测表明, 温度每升高1 ℃, 车前展叶始期和开花始期分别提前5.1和5.4 d, 而黄枯普遍期推迟4.8 d; 蒲公英展叶始期和开花始期分别提前6.5和7.8 d, 而黄枯普遍期推迟6.7 d。     

珠江口城市段近岸表层水体浮游细菌分离方法比较

为了更好地分离珠江口未/难培养的浮游细菌,本研究以珠江河口三个样点的水体为研究对象,同时采用了纯培养和免培养的方法,对不同培养基的分离效果进行了探索。在纯培养实验中,本研究选择了7种不同的分离培养基,共分离获得153株菌;同时,将扩增子分析结果作为分离效果的参考,所有环境样品中共包含3 553个操作分类单元（operational taxonomic units,OTUs）。对三个样点微生物类群的多样性进行比较,纯培养结果显示珠江口下游珠海样点多样性最高,其次为中大和虎门样点;免培养则显示虎门样点多样性最高;对比7种不同的分离培养基,Z7（R₂A）培养基的分离效果最好,分离菌株数和分离类群的α多样性最高,Z1（改良ISP 2）次之;主坐标分析结合韦恩图的结果表明相比其余的培养基,Z1和Z7培养基分离获得的菌群兼具普遍性和特异性,进一步证明了这两种培养基的分离效果较佳;冗余分析结果表明K₂HPO₄、酵母粉、可溶性淀粉、MgSO₄·7H₂O、麦芽膏和葡萄糖与特定类群的分离有相关关系,其中K₂HPO₄的影响最为显著（P<0.05）。本文通过7种不同培养基对河口微生物分离效果的探究,有助于我们在研究未知微生物的营养特性时,选择成分和组成更合理的培养基来提升河口微生物纯培养的分离效率。     

Development of an Efficient Protocol of RNA Isolation from Recalcitrant Tree Tissues

Isolation of RNA from recalcitrant tree tissues has been problematic due to large amounts of secondary metabolites and interfering compounds in their cells. We have developed an efficient RNA extraction method, which yielded high-quality RNA preparations from tissues of the lychee tree. The method reported here utilized EDTA, LSS, and CTAB to successfully inhibit RNase activities. It was found that a high ionic strength brought about by 2 M NaCl was necessary. In addition, secondary metabolites and other interfering compounds were effectively removed using sodium borate and PVPP under a deoxidized condition. The quality of purified RNA was tested by both RACE and Northern blotting analysis, ensuring that the RNA could be used for subsequent gene expression analysis. This method has been successfully applied to purify RNA from 15 other plant species. In conclusion, the protocol reported here is expected to have excellent applications for RNA isolation from recalcitrant plant tissues.