Computer Simulation of Surface Segregation

Abstract

Computer simulation techniques can now reliably model the surface structure and energies of inorganic solids. We present recent work which has been directed at modelling the segregation of impurities. The techniques are based on energy minimisation where the forces between the atoms are described by the Born model of solids. We initially show that magnesium and calcium segregation to the prism surfaces of alumina reproduce the available experimental data within the uncertainties of the experimental technique. However, reliable experimental data is not always available, and hence we show using the examples of calcium segregation to zirconia surfaces can give insights to the surface structure and provide predictions for experiment to test. Secondly, the simulations can be verified by comparison with morphologies. This is illustrated by comparison of the experimentally determined morphology of calcite with magnesium and lithium impurities with those calculated. Next extensions to the energy minimisation methods are described using dynamical techniques based on lattice and molecular dynamics. Finally, we describe the situation where there is phase separation and the structure and stability of the interface is governed by the epitaxial relations between the underlying oxide and the impurity oxide.     

Bacterial filaments recover by successive and accelerated asymmetric divisions that allow rapid post-stress cell proliferation

Filamentation is a reversible morphological change triggered in response to various stresses that bacteria might encounter in the environment, during host infection or antibiotic treatments. Here we re-visit the dynamics of filament formation and recovery using a consistent framework based on live-cells microscopy. We compare the fate of filamentous Escherichia coli induced by cephalexin that inhibits cell division or by UV-induced DNA-damage that additionally perturbs chromosome segregation. We show that both filament types recover by successive and accelerated rounds of divisions that preferentially occur at the filaments' tip, thus resulting in the rapid production of multiple daughter cells with tightly regulated size. The DNA content, viability and further division of the daughter cells essentially depends on the coordination between chromosome segregation and division within the mother filament. Septum positioning at the filaments' tip depends on the Min system, while the nucleoid occlusion protein SlmA regulates the timing of division to prevent septum closure on unsegregated chromosomes. Our results not only recapitulate earlier conclusions but provide a higher level of detail regarding filaments division and the fate of the daughter cells. Together with previous reports, this work uncovers how filamentation recovery allows for a rapid cell proliferation after stress treatment.     

Microbiological characterization of three Atlantic whiteside dolphins (Lagenorhynchus acutus) from stranding through captivity with subsequent rehabilitation and release of one animal

Three live Atlantic whiteside dolphins (Lagenorhynchus acutus) were found beach-stranded on Cape Cod in Massachusetts and were shipped to Mystic Marinelife Aquarium in Connecticut and held in captivity. Swab samples were collected routinely from the anus and blowhole of live animals and from internal organs at necropsy for microbial culture. Despite antibiotic therapy, one animal died on day 9 of captivity, and one died after 110 days. The survivor was released after 126 days of captivity. Klebsiella pneumoniae septicemia and staphylococcal pneumonia were likely responsible for the two deaths. A total of 26 different organisms (or groups of organisms) were recovered from the three dolphins, including several (e.g., Pseudomonas spp, Streptococcus faecalis Candida albicans, Proteus-Morganella spp, Vibrio spp) that, in addition to the above organisms, could be potentially pathogenic for debilitated animals. Newly rescued marine mammals should be segregated from healthy animals if possible.     

Habitat stability and the larval mosquito community in treeholes and other containers on a temperate Island

The temporal fluctuation of water levels and the presence of mosquito larvae were investigated for four types of small container habitats (treeholes, bamboo stumps, cemetery stone vases, and cemetery stone vessels) on Kabeshima Island in Kyushu, southwestern Japan. The probability that containers held water was positively correlated with the quantity of the preceding rainfall and with the depth and volume of the containers. It was estimated that dehydration occurred more regularly in autumn and winter than in summer. The probability that mosquito larvae were present in each type of container was positively correlated with habitat stability in terms of the probability of the existence of standing water and the coefficient of variation of the water level. Twelve species of mosquito larvae, including two rare predators, were found. Species composition differed between the different types of container. Although 4 to 10 species used each type of container, the median number of species per container was two for treeholes and bamboo stumps, and one for the others. The dominant species wasTripteroides bambusa in treeholes and bamboo stumps,Aedes albopictus in stone vases, andA. japonicus in stone vessels. The larval mosquito community, which lacked major predators, possessed the following features that may facilitate the coexistence of many species: (1) niche segregation amongst species in terms of their selection of container types; (2) an aggregated distribution of the individual species among containers of the same type; (3) high intraspecific mean crowding (and hence probably intense intraspecific competition) in the dominant species in each type of container; (4) independent species associations within the same type of container; and (5) low interspecific mean crowding (and hence probablynot intense interspecific competition) between species in the same type of container.     

Segregation analysis of random amplified polymorphic DNA (RAPD) markers in Picea abies Karst.

The reliability of arbitrarily primed amplification products was tested. The segregation analysis of 266 amplification products obtained using 17 different 10-mer oligonucleotides in 34 megagametophytes from a single tree of Picea abies was carried out. Fifty-four out of the 165 variable bands fit the 1:1 segregation ratio expected for Mendelian traits. The segregation ratio of a subset of six RAPD markers in five other individuals from the same population confirmed their genetic nature. Our results strengthen the evidence previously reported that RAPDs markers can be considered Mendelian traits useful in the detection of genetic variability among both different individuals and populations.     

Sex ratio variation and spatial segregation of the sexes in populations ofRumex acetosa andR. acetosella (Polygonaceae)

Populations ofRumex acetosa andR. acetosella were studied during two growth seasons. The ramet sex ratios ofR. acetosa were always female-biased. InR. acetosella the sex ratios expressed more variation but were mostly female-biased. In both species the sex ratios commonly varied between subpopulations reflecting a partial spatial segregation of the sexes. No marked differences between sexes in vegetative vigour were detected in either species. Interactions between sex ratios, various soil characteristics and population densities were determined. Possible mechanisms for causing biased sex ratios and partial spatial segregation of the sexes are discussed.     

Visualization and analysis of lipopolysaccharide distribution in binary phospholipid bilayers

Lipopolysaccharide (LPS) is an endotoxin released from the outer membrane of Gram-negative bacteria during infections. It have been reported that LPS may play a role in the outer membrane of bacteria similar to that of cholesterol in eukaryotic plasma membranes.In this article we compare the effect of introducing LPS or cholesterol in liposomes made of dipalmitoylphosphatidylcholine/dioleoylphosphatidylcholine on the solubilization process by Triton X-100. The results show that liposomes containing LPS or cholesterol are more resistant to solubilization by Triton X-100 than the binary phospholipid mixtures at 4 °C.The LPS distribution was analyzed on GUVs of DPPC:DOPC using FITC-LPS. Solid and liquid-crystalline domains were visualized labeling the GUVs with LAURDAN and GP images were acquired using a two-photon microscope. The images show a selective distribution of LPS in gel domains.Our results support the hypothesis that LPS could aggregate and concentrate selectively in biological membranes providing a mechanism to bring together several components of the LPS-sensing machinery.