广东黑石顶森林苔藓群落特征初探

通过对5个面积为2500m2的样地中树附生和地面苔藓植物的定量调查,初步研究了广东黑石顶森林中苔藓植物多样性特征。本次调查共发现苔藓植物50种,包括30种苔类和20种藓类。样地中树附生苔藓植物40种,地面苔藓植物24种,前者远高于后者。各样地中地面苔藓植物的种类为8-13种,盖度0.59%-1.12%,坡度及小生境的多样性对地面苔藓植物物种多样性及盖度均有很大影响;树附生苔藓植物12-20种,盖度0.63%-1.63%。结果显示30a的次生林中苔藓植物的物种丰富度及盖度均可恢复到与成熟阔叶林接近的水平。相似性分析表明,成熟阔叶林内苔藓植物种类组成与针阔叶混交林及30a的次生阔叶林差异不明显,但前者的苔藓植物群落结构与后者的差异较大。     

Many broadly-shared mycobionts characterize mycorrhizal interactions of two coexisting epiphytic orchids in a high elevation tropical forest

Interspecific interactions play an important role in community assembly. A basic ecological question is whether interactions are specialized (one to one) or generalized (many to many). Specialization of interactions should ideally be assessed across several populations because species could be specialists at a particular site but generalists when several sites are considered. Mycorrhizal interactions are fundamental for orchid life and distribution, but their level of specialization is still under debate. To understand the extent to which epiphytic orchids are specialists in their mycorrhizal interactions, we studied the richness and phylogenetic structure of mycobionts across different sites, and the similarity in the mycobiont composition between coexisting orchid species. We sequenced the nrDNA ITS2 region and explored the mycobiont communities associated with two epiphytic orchids, Epidendrum marsupiale and Cyrtochilum pardinum, at two elevations within two sites in Ecuador. We found 108 OTUs belonging to Serendipitaceae (66), Ceratobasidiaceae (22), Atractiellales (11) and Tulasnellaceae (9). Orchids at the highest elevations hosted the highest OTU richness. The two orchid species shared a high percentage of mycobionts between all sites. No phylogenetic structure within orchid mycorrhizal communities was found at any sites or elevations. Our results indicate that the studied orchids are generalists and share a broad group of mycobionts (16 OTUs) with no apparent niche segregation within or between sites.     

Local-scale spatial diversity patterns of ectomycorrhizal fungal communities in a subtropical pine-oak forest

This study aimed to analyze spatial patterns of soil ectomycorrhizal fungal (EMF) communities at the local scale in a subtropical pine-oak forest located in the Nearctic-Neotropical transition in central Mexico, to underpin biodiversity conservation strategies in forest fragments of this region. We used a spatially-explicit nested square sampling design with the same sampling representativeness at all scales and replicated three times. We detected 674 EMF OTUs within 19,200 m² and 65 OTUs on average per sample. Seventy percent of OTUs were detected in only 1–4 samples. Average community similarity was below 5%, showed minor change within 14 and 339 m distance and increased with the spatial grain used to compare the data. We found a high species-area relationship and beta diversity coefficients for soil fungi indicating that, at the local scale, increasing area by a constant factor of four represented an increase in OTU richness by a factor of two.     

Calculating phenotypic similarity between genes using hierarchical structure data based on semantic similarity

Phenotypic similarity is correlated with a number of measures of gene function, such as relatedness at the level of direct protein-protein interaction. The phenotypic effect of a deleted or mutated gene, which is one part of gene annotation, has caught broad attention. However, there have been few measures to study phenotypic similarity with the data from Human Phenotype Ontology (HPO) database, therefore more analogous measures should be developed and investigated. We used five semantic similarity-based measures (Jiang and Conrath, Lin, Schlicker, Yu and Wu) to calculate the human phenotypic similarity between genes (PSG) with data from HPO database, and evaluated their accuracy with information of protein-protein interaction, protein complex, protein family, gene function or DNA sequence. Compared with the gene pairs that were random selected, the results of these methods were statistically significant (all P<0.001). Furthermore, we assessed the performance of these five measures by receiver operating characteristic (ROC) curve analysis, and found that most of them performed better than the previous methods. This work had proved that these measures based on semantic similarity for calculation of PSG were effective for hierarchical structure data. Our study contributes to the development and optimization of novel algorithms of PSG calculation and provides more alternative methods to researchers as well as tools and directions for PSG study.     

南亚热带森林不同林型功能性状分布格局及其驱动机制

植物功能性状能反映植物对环境变化的响应,研究植物功能性状的分布格局有助于揭示群落的构建过程及其内在作用机制。该研究以鼎湖山南亚热带山地常绿阔叶林和沟谷雨林为研究对象,采集并测量了样地中木本植物的12种不同的功能性状,分别以5 m×5 m、10 m×10 m、20 m×20 m的样方为尺度单元,通过计算平均成对性状距离指数来探讨群落中功能性状的分布格局及其驱动机制。结果表明,两个林型的群落中12个功能性状均存在不同程度变异,但功能性状在群落间的差异不显著(P>0.05)。两个林型的群落中功能性状空间分布格局均具有尺度依赖性,但不同尺度的驱动机制有差异,随着空间尺度的增大,山地常绿阔叶林的功能性状空间分布格局主要驱动机制由环境过滤转为扩散限制;沟谷雨林的由环境过滤和相似性限制转为扩散限制,两个林型在20m×20m空间尺度上都是扩散限制。生态位分化和扩散限制综合作用于鼎湖山南亚热带山地常绿阔叶林和沟谷雨林的群落功能性状分布格局的产生及其群落构建过程,二者的贡献作用会随空间尺度发生变化。坡度是影响山地常绿阔叶林功能性状分布格局的最关键地形因子,海拔是影响沟谷雨林的最关键地形因子。     

PNN-curve: a new 2D graphical representation of DNA sequences and its application

We introduce a novel 2D graphical representation of DNA sequences based on the pairs of the neighboring nucleotides (PNNs). Then we get the PNNs' distributions and obtain a y-M. The construction of the PNN-curve has some important advantages (1) It avoids loss of information and the PNN-curve standing for DNA sequences does not overlap or intersect with itself. (2) The novel 2D representation is more sensitive. The utility of this method can be illustrated by the examination of similarities/dissimilarities among the coding sequences of the first exon of beta-globin gene of eleven different species in Table 2.     

螺旋藻POD、CAT和SOD同工酶的研究

采用聚丙烯酰胺凝胶电泳法对毛乌素沙地碱湖的钝顶螺旋藻S3和鄂尔多斯螺旋藻S4与国外引进的钝顶螺旋藻S1和极大螺旋藻S2 的POD、CAT和SOD同工酶进行了比较研究。结果表明 :4个样品的 3种酶同工酶带数目不同 ,依次是S4 >S3>S1>S2 ;S3和S4 酶带数多 ,对环境适应性强 ,进化程度较高。螺旋藻不同种间的酶谱相似系数为 0 5 3～ 0 80 ,有较近的亲缘关系 ;原产地不同的钝顶螺旋藻S1和S3间酶谱相似系数最高为 0 86,表明螺旋藻种内差异 <种间差异。     

粤北六地森林群落的比较研究

利用植被样方法和重要值计算,对地处广东北部山区的南雄青嶂山、始兴南山、曲江沙溪、翁源青云山、新丰云髻山、河源大桂山的森林群落乔木层优势科、优势种及各地共优种的径级结构进行了比较分析。结果表明,各地共有优势科为壳斗科、樟科、山茶科、金缕梅科、冬青科、杜鹃花科等13科,与他们所处的中亚热带地理位置相适应;6地共有优势种9个,优势度存在明显差异。群落的相似性系数以沙溪与南山之间的75．88％为最大;青云山与大桂山之间的45．64％为最低;南山与其他各地的群落相似性系数均大于60％。共有优势种的种群径级结构中,甜锥（Castanopsis eyrei）、罗浮柿（Diospyros morrisiana）、酸枣（Choerospondias axillaris）种群在粤北6地的个体数量分布,与各地的纬度差异有较明显的相关性。云髻山和沙溪的黧蒴（Castanopsis fissa）种群呈增长趋势,而南山和大桂山的趋于衰退。青云山的木荷（Schima superba）种群呈增长趋势,而其他地区的更新不良。黄樟（Cinnamomum porrectum）在各地分布为散生,种群规模小,径级结构不完整。各地枫香（Liquidambar formosana）种群的径级结构不完整,缺乏Ⅰ级幼苗。杉木（Cunninghamia lanceolata）、马尾松（Pinus massoniana）种群在粤北6地均呈现衰退趋势。研究结果提示,整体上粤北6地森林的非地带性植被趋于衰退,常绿阔叶林的恢复进展顺利。     

稻鸭共作及其它控草措施对稻田杂草群落的影响

运用群落生态学方法研究了稻鸭共作、人工除草、化学除草3种控草措施对稻田杂草群落特征的影响及其对田间杂草的控制作用.结果表明,稻鸭共作显著降低了田间杂草的发生密度,对稻田主要杂草鸭舌草(Monochoriavaginalis)、异型莎草(Cyperusdifformis)、矮慈姑(Sagittariapygmaea)的防效均达到95%以上,总体控草效果显著优于化学除草和人工除草.稻鸭共作使稻田杂草群落的物种丰富度及Shannon-Wiener多样性指数略有降低,但Pielou均匀度指数显著提高,表明群落物种组成有了很大的改变,降低了原来优势杂草的发生危害.在不同控草措施作用下,稻田杂草群落的结构组成也发生了一定的变化,稻鸭共作区群落组成为陌上菜(Linderniaprocumbens)+异型莎草+水虱草(Fimbristylismiliacea),Whittaker群落指数显著高于化学除草、人工除草及对照区,表明稻鸭共作对田间杂草群落结构影响较大.从Sorensen群落相似性指数及以其为距离测度指标的聚类分析结果中也可得到同样的结论.     

简论相似性测度的选择——以奥陶纪末大灭绝后全球腕足动物古地理为例

灭绝事件对古生物地理格局的影响已引起关注,近期研究表明奥陶纪末大灭绝事件后多样性显著高于传统认识,而全球该时期腕足动物的古生物地理分布情况尚未见报道。本文基于已发表的和最新的资料及所掌握新数据的整理,建立全球腕足动物志留纪初鲁丹(Rhuddanian)早期（残存期）13个产地72属137个出现信息(occurrence...