Diversity of Streptomyces spp. in Eastern Himalayan region - computational RNomics approach to phylogeny

Isolation and characterization of actinomycetes from soil samples from altitudinal gradient of North-East India were investigated for computational RNomics based phylogeny. A total of 52 diverse isolates of Streptomyces from the soil samples were isolated on four different media and from these 6 isolates were selected on the basis of cultural characteristics, microscopic and biochemical studies. Sequencing of 16S rDNA of the selected isolates identified them to belong to six different species of Streptomyces. The molecular morphometric and physico-kinetic analysis of 16S rRNA sequences were performed to predict the diversity of the genus. The computational RNomics study revealed the significance of the structural RNA based phylogenetic analysis in a relatively diverse group of Streptomyces.     

The effects of disturbance on forest structure and diversity at different altitudes in Garhwal Himalaya

The effects of disturbance on forest structure and diversity along an altitudinal gradient in the temperate, sub-tropical, and tropical regions of Garhwal Himalaya were assessed. Each region was further categorized into undisturbed (UD), mildly disturbed (MD), and highly disturbed (HD) sites on the basis of magnitude of disturbance in these forests. On UD sites of temperate, sub-tropical and tropical regions, Quercus leucotrichophora, Anogeissus latifolia and Holoptelea integrifolia were the dominant tree species respectively. The highest values of tree density (1028 ind*hm-2) and total basal cover at breast height (31.70 m2 *hm-2) were recorded for UD site of temperate region, whereas maximum species diversity (3.128) and equitability (14.09) values were observed for HD site of tropical region. The structure and composition of the forests were greatly affected by the degree of disturbance.     

应用遥感技术研究土地利用/土地覆盖变化及其对土壤侵蚀过程的影响--以印度北部Pali Gad山地流域为例

应用遥感技术评估了印度北部Pali Gad山地流域过去几十年里土地利用／土地覆盖变化及其造成的土壤侵蚀程度,并基于摩根参数模型（Morgan Parametric Model）的方法来测定土壤的侵蚀程度;结果表明,由于不同的坡向受到太阳光照的不同可以引起土地覆盖的变迁;海拔和坡度已不再是阻碍人们获取自然资源的因素,人们的活动范围正转移到更高的海拔和更陡峭的坡度;揭示了土地利用／土地覆盖变化对土壤侵蚀进程有着直接的影响。     

Phylogenetic diversity,structure and diversification patterns of endemic plants along the elevational gradient in the Eastern Himalaya

ABSTRACT

Background: Several studies have documented the variation in species diversity patterns along elevational gradients in the Himalaya, but few have reported the evolutionary and biogeographic processes behind these patterns.

Aims: To understand whether evolutionary history and phylogeny have any role in structuring plant species communities along an elevational gradient in the Sikkim Himalaya.

Methods: We used data on endemic plant species occurrence from primary and secondary sources to construct family-level phylogenetic supertrees for different growth forms with the help of Phylomatic tool of Phylocom. These phylogenetic supertrees were used as a base for testing phylogenetic diversity (PD), niche conservatism, diversification time patterns and phylogenetic structure of various plant growth forms along an elevational gradient.

Results: PD was the highest at mid-elevations for all growth forms and PD had a significant positive correlation with endemic species richness. Species at mid-elevations were dominated by the ancestral/primitive taxa. There was phylogenetic clustering at higher elevations and phylogenetic overdispersion at lower and mid-elevations for the majority of the growth forms.

Conclusions: Time-for-speciation effect and niche conservatism along elevation (retention of niche-related ancestral elevational distribution over evolutionary time scale by species) together determine plant species diversity patterns in the Himalaya.     

Microfossils from the Krol ‘A’ of the Lesser Himalaya,India: Additional supporting data for its early Ediacaran age

An assemblage of microfossils of moderate diversity, with the remarkable occurrence of ECAP acritarchs, is reported from the Ediacaran Krol ‘A’ (= the Mahi Formation) succession of Lesser Himalaya, India. Microfossils occur in the chert nodules exposed in Solan district, Himachal Pradesh. Two microfossils, Barogophycus symmetricus n. gen. n. sp. and Botominella lineata are new to the well-established Krol assemblage. The paper concentrates predominantly on fossil eukaryotic filamentous and coccoidal micro-organism of simple morphology. The assemblage is dominated by remains of prokaryotic cyanobacteria and demonstrates the diversity achieved by microorganisms at the beginning of the Ediacaran Period in the aftermath of the Marinoan glaciation. Filamentous and coccoidal microorganisms differ in taxonomic composition from the Mesoproterozoic microbiotas. The Krol microfossils assemblage has biostratigraphic potential and usefulness in broadly demarcating the different levels of the Ediacaran strata. Because of the presence of ECAP acritarchs, along with the appearance of other eukaryotic microorganisms of filamentous and coccoidal morphology, the general level of the Krol ‘A’ assemblage is considered as Ediacaran.     

Dominant fungi in the rhizosphere of established tea bushes and their interaction with the dominant bacteria under in situ conditions

Species of Penicillium and Trichoderma were found to dominate the rhizosphere of established tea bushes in a detailed study conducted from various tea growing locations in India. Penicillium erythromellis, P. janthinellum, P. raistrickii, Trichoderma pseudokoningii and T. koningii were found to be closely associated with tea roots. While seasonal fluctuation was observed in the case of Penicillium spp., the population of Trichoderma spp. showed less variation during the year. Both species were sensitive to low temperatures. In general, fungi associated with the tea rhizosphere were found to prefer a mesophillic temperature range (15 °C to 35 °C). The dominant species of Penicillium and Trichoderma also exhibited tolerance to lower temperatures, i.e., 5 to 10 °C on agar plates. Most fungi were able to grow in a wide range of pH (4 to 12). Lowering of soil pH in the rhizosphere of tea bushes was positively correlated with the age of the bush and may have affected the development of a specific microbial community in the rhizosphere.The populations of Penicillium and Trichoderma species were inversely correlated with the populations of two most dominant rhizosphere bacteria, Bacillus subtilis and B. mycoides. Both Bacillus species have been shown to have antagonistic activity against these two fungi under in vitro conditions. The present study demonstrates the existence of a similar antagonism under in situ conditions in the rhizosphere of established tea bushes.     

Structure and function of shisham forests in central Himalaya,India: nutrient dynamics

The structure and function of Shisham (Dalbergia sissoo Roxb.) forests were investigated in relation to nutrient dynamics in 5- to 15-year-old stands growing in central Himalaya. Nutrient concentrations and storage in different layers of vegetation were in the order: tree > shrub > herb. Forest soil, litter and vegetation accounted for 80.1-91.9, 1.0-1.5 and 7.0-18.4%, respectively, of the total nutrients in the system. There were considerable reductions (trees 32.8-43.1; shrubs 26.2-32.4; and herbs 18-8-22-2%) in nutrient concentrations of leaves during senescence. Nutrient uptake by the vegetation as a whole and also by the different components, with and without adjustment for internal recycling, was investigated. Annual transfer of litter nutrients to the soil from vegetation was 74.8-108.4 kg ha(-1) year(-1) N, 56.8-4 kg ha(-1) year(-1) P and 38.7-46.9 kg ha(-1) year(-1) K. Turnover rate and time for different nutrients ranged between 56 and 66 % year(-1) and 1.5 and 1.8 years, respectively. The turnover rate of litter indicates that over 50% of nutrients in litter on the forest floor are released, which ultimately enhances the productivity of the forest stand. The nutrient use efficiency in Shisham forests ranged from 136 to 143 kg ha(-1) year(-1) for N, 1,441 to 1,570 kg ha(-1) year(-1) for P and 305 to 311 kg ha(-1) year(-1) for K. Compared with natural oak forest (265 kg ha(-1) year(-1) and an exotic eucalypt plantation (18 kg ha(-1) year(-1), a higher proportion of nutrients was retranslocated in Shisham forests, largely because of higher leaf tissue nutrient concentrations. This indicates a lower nutrient use efficiency of Shisham compared with eucalypt and oak. Compartment models for nutrient dynamics have been developed to represent the distribution of nutrients pools and net annual fluxes within the system.     

Himalayan langurs: Temperate colobines

Four field studies of the langur monkey, Presbytis entellus, living in the Himalaya are compared, in order to uncover shared features of behavior and population structure that may be related to this habitat. Shared demographic characteristics include seasonality in mating and births, predominately multi-male troops at least during some times of the year, relatively large home ranges, low population densities with few intertroop encounters, and seasonal utilization of home ranges with distance maintenance between groups. Shared social characteristics include behavioral buffers against cold and inclement weather, fluctuation in male membership with greatest instability and lowest numbers during the mating season, a vocal repertoire marked by a unique vocalization of major importance in troop maintenance as well as alterations in the function of species-typical vocalizations, and variations in sexual behavior including variable expression of “typical” female headshake present, increased male initiation of sexual activity and a low incidence of female harrassment of sexual consorts. It is argued that while no single feature may be unique to Himalayan langur populations, the total cluster of features is, and can be related to climatic seasonality in the Himalayan temperate environment, the predominance of a multi-male group structure for some periods, and possibly genetic isolation.     

Changes in soil characteristics in eucalypt plantations replacing natural broad-leaved forests

Properties of the top 30 cm of soil under plantations of 1-yr to 8-yr old Eucalyptus (the hybrid E. tereticornis) and in adjacent natural mixed broad-leaved forest were compared in the sub-tropical zone of the central Himalaya. Various soil-physical characteristics decreased with increasing age; soil-chemical properties, notably organic carbon, total N, P and K decreased as a result of reforestation with Eucalyptus and further decreased with increasing age of the plantation.