The sclerobionts of the Bajocian Oolithe ferrugineuse de Bayeux Formation from Calvados (Paris Basin,Normandy, France)

Silicified fossils collected in ploughed fields at Gavrus (Calvados, France), mainly mollusc shells, are Bajocian in age, and come from the Oolithe ferrugineuse de Bayeux Formation. The entire formation is highly condensed and most fossils are reworked. Their silicification allowed treatment with dilute hydrochloric acid. This treatment brought to light numerous encrusting sclerobionts: Porifera (3 taxa), Bryozoa (n), Polychaeta (9), Brachiopoda (n), Bivalvia (5). The borings and bioerosional traces are described using the “categories of architectural design” as defined by Buatois et al. (2017). Among the 28 ichnotaxa described (corresponding to an ichnodisparity of 14), Planavolites wisshaki isp. nov., Kleithrichnus belemnophilus igen. nov., isp. nov. and Foggara foggara igen. nov., isp. nov. are new. Some Gastrochaenolites dijugus Kelly and Bromley, 1984 borings accommodate the shell of the presumed borer Lithophaga fabella J.-A. Eudes-Deslongchamps, 1838. A group of Nododendrina europaea (Fischer, 1875) on a belemnite rostrum provides a good instance of an ichnogenetic series. Encrusting sclerobionts and macroscopic boring and bioerosional trace-makers are dominantly suspension feeders. The ichnofacies is a peculiar Entobia-ichnofacies, found in deeper, lower-energy environments than the “classical” coastal Entobia-ichnofacies, on deep shell-grounds far from the coast, in the deep euphotic zone.     

Ricinus communis cyclophilin: functional characterisation of a sieve tube protein involved in protein folding

The phloem translocation stream of the angiosperms contains a special population of proteins and RNA molecules which appear to be produced in the companion cells prior to being transported into the sieve tube system through the interconnecting plasmodesmata. During this process, these non-cell-autonomous proteins are thought to undergo partial unfolding. Recent mass spectroscopy studies identified peptidyl-prolyl cis-trans isomerase (PPIases) as potential molecular chaperones functioning in the phloem translocation stream (Giavalisco et al. 2006). In the present study, we describe the cloning and characterisation of a castor bean phloem cyclophilin, RcCYP1 that has high peptidyl-prolyl cis-trans isomerase activity. Equivalent enzymatic activity was detected with phloem sap or purified recombinant (His)(6)-tagged RcCYP1. Mass spectrometry analysis of proteolytic peptides, derived from a 22 kDa band in HPLC-fractionated phloem sap, immunolocalisation studies and Western analysis of proteins extracted from castor bean tissues/organs indicated that RcCYP1 is an abundant protein in the companion cell-sieve element complex. Microinjection experiments established that purified recombinant (His)(6)-RcCYP1 can interact with plasmodesmata to both induce an increase in size exclusion limit and mediate its own cell-to-cell trafficking. Collectively, these findings support the hypothesis that RcCYP1 plays a role in the refolding of non-cell-autonomous proteins after their entry into the phloem translocation stream.     

Comparison of tomato root distributions by minirhizotron and destructive sampling

Calibration of minirhizotron data against root length density (RLD) was carried out in a field trial where three drip irrigation depths: surface (R0) and subsurface, 0.20 m (RI) and 0.40 m depth (RII) and two processing tomato cultivars: `Brigade' (CI) and `H3044' (CII) were imposed. For each treatment three minirhizotron tubes were located at 10, 37.5 and 75 cm of the way from one plant row to the next. Roots intersecting the minirizotrons walls were expressed as root length intensity (L _a) and number of roots per unit of minirhizotron wall area (N _ra). Root length density (RLD) was calculated from core samples taken for each minirhizotron tube at two locations: near the top of the minirhizotron (BI) and 15 cm apart from it, facing the minirhizotron wall opposite the plant row (BII). Minirhizotron data were regressed against RLD obtained at BI and BII and with their respective means. The results show that for all the situations studied, better correlations were obtained when RLD was regressed with L _a than with N _ra. Also was evident that the relationship between L _a and RLD was strongly influenced by the location of soil coring. RLD was correlated with L _a trough linear and cubic equations, having the last ones higher determination coefficients. For instance at 10 cm from the plant row when values from the top layer (0–40 cm) were analysed separately, L _a was significantly regressed with RLD measured at BII and described by the equations: RLD = 0.5448 + 0.0071 L _a (R ² = 0.51) and RLD = 0.4823 + 0.0074L _a + 8×10^–5 L _a ² – 5×10^–7 L _a ³ (R ² = 0.61). Under the 40 cm depth the highest coefficients of determination for the linear and cubic equations were respectively 0.47 and 0.88, found when L _a was regressed with RLD measured at BI. For minirhizotrons located at 75 cm from the plant row and for location BI it was possible to analyse jointly data from all depths with coefficients of determination of 0.45 and 0.59 for the linear and cubic equations respectively.     

Comparative evaluation of nano-filled and conventional adhesives for bonding of molar tubes

It is of interest to compare the bonding characteristics of the two nano filled adhesives, Grandio (Voco, Cuxhaven, Germany) and Transbond Supreme LV (TSLV, 3M Unitek, Monrovia, California) with conventional bonding adhesive Transbond XT (TBXT, 3M Unitek) for bonding of molar tubes. 45 extracted human permanent molar teeth, divided into three groups of 15 each, were bonded with stainless steel molar tubes (3M Unitek, USA) using TBXT in Group 1, Grandio in Group 2, TSLV in Group 3. Remnant Index and shear bond strength was evaluated after 24 hrs. of storage with the aid of Instron Universal testing machine and Stereomicroscope respectively. Data were analysed using Analysis of Variance (ANOVA) test, Post-hoc Bonferroni test and Kruskal Wallis test. The mean SBS of Group 1(TBXT) was 13.86±3.27 MPa, Group 2 (Grandio) was 9.48±2.36 MPa and Group 3 (TSLV) was 11.64±2.71 MPa. Both nano-filled adhesives had SBS well above the clinically acceptable range. Assessment of ARI scores and type of bond failure revealed that adhesive failure for TBXT and TSLV and cohesive failure for Grandio. Nano-filled adhesives can be an appropriate substitute for the conventional adhesive for bonding of molar tubes.     

Hexoses as phloem transport sugars: the end of a dogma?

According to most textbooks, only non-reducing carbohydrate species such as sucrose, sugar alcohols, and raffinose-family sugars function as phloem translocates. Occasional abundance of reducing sugar species (such as hexoses) in sieve-tube sap has been discarded as an experimental artefact. This study, however, discloses a widespread occurrence of hexoses in the sieve-tube sap. Phloem exudation facilitated by EDTA provided evidence that many of the members of two plant families (Ranunculaceae and Papaveraceae) investigated translocate >80% of carbohydrates in the form of hexoses. Representatives of other families also appear to translocate appreciable amounts of hexoses in the sieve tubes. Promoting effects of EDTA, activities of sucrose-degrading enzymes, and sugar uptake by micro-organisms on hexose contents of phloem exudates were checked. The rate of sucrose degradation is far too low to explain the large proportions of hexoses measured in phloem exudates; nor did other factors tested seem to stimulate the occurrence of hexoses. The validity of the approach is further supported by the virtual absence of hexoses in exudates from species that were known as exclusive sucrose transporters. This study urges a rethink of the existing views on carbohydrate transport species in the phloem stream. Hexose translocation is to be regarded as a normal mode of carbohydrate transfer by the phloem equivalent to that of sucrose, raffinose-family sugars, or sugar alcohols.     

Reducing the cost of benthic sample processing by using sieve retention probability models

Estimation of abundance or biomass of benthic invertebrates requires considerable effort to process samples. Consequently, it has been suggested to process only organisms retained by a relatively coarse meshed sieve and apply size-specific correction factors based on the probability that a sieve retains individual organisms. Benthic samples were collected from 10 sites in 2 regions and processed to validate an existing empirical model predicting sieve retention probabilities, to test whether periphyton biomass affects probability of retention, and to determine the optimal strategy that minimizes both cost and variability of estimates. The existing model predicting sieve retention probabilities corrected for organisms lost through sieves and mostly corrected for underestimation of biomass, but this model lead to overestimates of the frequency of the smallest organisms. Inclusion of algal biomass improved slightly the proportion of correct predictions (whether an organism is retained or not by a sieve) by 0.6% relative to the existing model (from 90.8% to 91.4%), and removed the bias. Density and biomass estimates obtained by only processing organisms retained by 1- or 2-mm sieves and applying correction factors derived from the predicted retention probabilities were accurate and only marginally less precise than estimates obtained by processing all organisms. The reduced precision of estimates from subsets of organisms could be compensated by increasing sample size and still lead to a reduction of 40–60% of the number of organisms processed. Even though the use of subsets introduces additional analytical variability, this variability is relatively small compared to the natural spatial variability among replicates. Handling editor: K. Martens     

Covalently bound wall proteins of pollen grains and pollen tubes grown in vitro and in styles after self- and cross-pollination in Lilium longiflorum

Summary A method was worked out using trifluoromethanesulfonic acid (TFMS) as a reagent to split the covalently bound proteins, which are NaCl insoluble, from pollen tube walls of Lilium longiflorum, leaving the peptide bonds essentially intact. After electrophoretic separation, comparisons were made among these proteins from pollen grains and pollen tubes grown in vitro and in styles after self- and cross-pollination. It was found that a) the patterns of covalently bound wall proteins were different between tubes grown in vitro and in vivo; b) fewer bands were found in covalently bound wall proteins than that in noncovalently bound proteins; c) the bands remained almost the same no matter whether the tubes had been cross pollinated or self pollinated, indicating that while the noncovalently bound proteins were involved in incompatibility as shown in the previous paper, the covalently bound proteins may only serve as a structural component, having little to do with incompatibility.