Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria

Despite detailed studies of marine sulfur-oxidizing bacteria, our knowledge concerning their counterparts in freshwater lake ecosystems is limited. Genome sequencing of the freshwater sulfur-oxidizing betaproteobacteria Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H have been completed. Strain skB26 possessed a circular plasmid of 86.6-kbp in addition to its chromosome, and an approximate 18-kbp region of the plasmid was occupied by an arxA-like operon, encoding a new clade of anaerobic arsenite oxidase. Multilocus sequence analysis showed that strain skB26 could not be assigned to any existing order; thus a novel order, Sulfuricellales, is proposed. The genomes of strains skB26 and sk43H were examined, focusing on the composition and the phylogeny of genes involved in the oxidation of inorganic sulfur compounds. Strains skB26 and sk43H shared a common pathway, which consisted of Sqr, SoxEF, SoxXYZAB, Dsr proteins, AprBA, Sat, and SoeABC. Comparative genomics of betaproteobacterial sulfur oxidizers showed that this pathway was also shared by the freshwater sulfur oxidizers Thiobacillus denitrificans and Sideroxydans lithotrophicus. It also revealed the presence of a conserved gene cluster, which was located immediately upstream of the betaproteobacterial dsr operon.     

Parasitic Attachments by Overwintering Silver Lampreys, Ichthyomyzon unicuspis, and Chestnut Lampreys, Ichthyomyzon castaneus

We present evidence that at least some parasitic-phase silver lampreys, Ichthyomyzon unicuspis, and chestnut lampreys, I. castaneus, remain attached to host fish during the winter. Lake sturgeon, Acipenser fulvescens, harvested through the ice by spearfishers in the Lake Winnebago system in Wisconsin may bear silver lampreys or fresh lamprey wounds, and sturgeon with lamprey marks were significantly larger than sturgeon without them. Silver lampreys collected on paddlefish, Polyodon spathula, in the Wisconsin River in March were not significantly longer than silver lampreys collected previously in late October, but they were significantly heavier, an indication that they were feeding to at least some extent during the intervening period. Other large fish species, including northern pike, Esox lucius, and flathead catfish, Pylodictus olivaris, have been collected or observed during the winter with silver or chestnut lampreys attached. Although energy and nutrient intake by parasitic lampreys may be reduced during the winter, lampreys attached to hosts may also benefit from the hosts' mobility and ability to avoid potentially harmful situations.     

Accelerated organic matter decomposition in thermokarst lakes upon carbon and phosphorus inputs

Mineralization of dissolved organic matter (DOM) in thermokarst lakes plays a non-negligible role in the permafrost carbon (C) cycle, but remains poorly understood due to its complex interactions with external C and nutrient inputs (i.e., aquatic priming and nutrient effects). Based on large-scale lake sampling and laboratory incubations, in combination with ¹³C-stable-isotope labeling, optical spectroscopy, and high-throughput sequencing, we examined large-scale patterns and dominant drivers of priming and nutrient effects of DOM biodegradation across 30 thermokarst lakes along a 1100-km transect on the Tibetan Plateau. We observed that labile C and phosphorus (P) rather than nitrogen (N) inputs stimulated DOM biodegradation, with the priming and P effects being 172% and 451% over unamended control, respectively. We also detected significant interactive effects of labile C and nutrient supply on DOM biodegradation, with the combined labile C and nutrient additions inducing stronger microbial mineralization than C or nutrient treatment alone, illustrating that microbial activity in alpine thermokarst lakes is co-limited by both C and nutrients. We further found that the aquatic priming was mainly driven by DOM quality, with the priming intensity increasing with DOM recalcitrance, reflecting the limitation of external C as energy sources for microbial activity. Greater priming intensity was also associated with higher community-level ribosomal RNA gene operon (rrn) copy number and bacterial diversity as well as increased background soluble reactive P concentration. In contrast, the P effect decreased with DOM recalcitrance as well as with background soluble reactive P and ammonium concentrations, revealing the declining importance of P availability in mediating DOM biodegradation with enhanced C limitation but reduced nutrient limitation. Overall, the stimulation of external C and P inputs on DOM biodegradation in thermokarst lakes would amplify C-climate feedback in this alpine permafrost region.     

Suitability of habitat for spawning lake trout

We provide further insight into the reproductive ecology and spawning requirements of lake trout. New comparative information about substrate characteristics, sediment transport, quality of interstitial water at spawning substrates, and the role of temperature in site selection and time of spawning is given for lakes Simcoe and Manitou (Ontario) and Seneca Lake (New York). Spawning lake trout commonly use stable lag deposits derived from glacial sediments, or relict features such as fans, bars or submerged talus slopes. Artificial breakwaters of broken material may also provide suitable substrates. Optimal particle sizes range from 4 to 10 cm diameter but larger materials to 30 cm are also successfully utilized for spawning. The transport of finer particulates by wind generated water movements may limit the suitability of some substrates and successful spawning sites are usually remote from depositional effects. Successful embryo development is associated with low nutrient conditions, with high dissolved oxygen (>7 mg L^-1) and with low un-ionized ammonia (<12.5 g L^-1) in the interstitial water of spawning substrates. Shallow-water spawning appears to be the common strategy of colonizing lake trout. Some deepwater spawning in the Great Lakes may reflect initial colonization in shallow-water and adaptation to later increases in water level, but some may also reflect unique behavioural and physiological adaptations. Temperature is an important cue, and many wild and hatchery stocks spawn at 8 to 13 °C with latitudinal shifts in the actual time of spawning. These requirements are summarized as a dichotomous key for evaluation of approaches to restoration of lost or damaged lake trout stocks.Presented at the Conference on Rehabilitation of Lake Trout in the Great Lakes: A Critical Assessment (sponsored by the Great Lakes Fishery Commission, Ann Arbor, Michigan, January 10–14, 1994).     

Recent palaeolimnology of three shallow Danish lakes

Recent eutrophication histories of three shallow lakes (mean depths <3 m) were studied using palaeolimnological methods. Freeze-cores were dated using ²¹⁰Pb, ¹³⁷Cs, ¹³⁴Cs and ²⁴¹Am. Resultant chronologies were problematical at two sites (Væng Sø and Vesterborg Sø) due to sediment-water interface mixing, indicated by uniform ¹³⁷Cs profiles over the surface 20–30 cm. Sediments at Langesø and Vesterborg Sø have a high carbonate content, which together with the high mixing rate have resulted in diatom dissolution below 30 cm at Vesterborg Sø. Diatom stratigraphy indicates relatively small biological changes at both Væng Sø and Langesø both lakes have been eutrophic for at least the last 150–200 years. Væng Sø is dominated by planktonic diatoms together with high percentages of benthic Fragilaria spp., and Langesø by planktonic diatoms, especially Cyclostephanos dubius and Stephanodiscus parvus.Epilimnetic phosphorus concentrations were inferred using weighted averaging; at Væng Sø the diatom-inferred TP (DI-TP) concentrations were close to observed values in the early 1980s, but failed to record the post-biomanipulation decrease to 55 g l^-1 after 1988, presumably due to the smoothing of the sediment record by resuspension and mixing. At Langesø two increases in DI-TP suggest a two-phase enrichment of the lake, initial eutrophication 1880, and hypertrophy after 1950. The recent DI-TP values are lower than the annual observed values, and reasons for this are discussed. Despite problems associated with sediment mixing, the sediment records of these shallow systems can still be used for monitoring and for environmental reconstructions.     

纳木措可培养丝状真菌多样性及其与理化因子关系

微生物多样性在评估水体生态环境方面发挥着重要作用。本研究以青藏高原纳木措湖为研究对象, 开展水体可培养丝状真菌多样性及影响因子研究。通过膜过滤平置培养法、经典分类法和rRNA转录间隔区(ITS)序列分析对纳木措湖20个采样点的丝状真菌进行分离、纯化及鉴定, 测定水体理化指标, 综合分析丝状真菌空间分布格局与理化因子的相关性。菌种鉴定结果显示, 从纳木措水体样品中共分离纯化出1,412株丝状真菌, 隶属22属47种, 其中链格孢属(Alternaria)、青霉属(Penicillium)和毛霉属(Mucor)为优势属, 链格孢(Alternaria chlamydosporigena)和冻土毛霉(Mucor hiemalis)为优势种; Pearson相关性分析显示, 丝状真菌总丰度与温度、铵态氮、全磷呈显著正相关; 冗余分析显示, 铵态氮、温度、全磷、全氮、盐度及电导率是影响纳木措湖丝状真菌群落组成与分布的主要理化因子。综上所述, 纳木措水体可培养丝状真菌具有较高的物种多样性和空间异质性, 而且水体环境因子影响其分布。     

土壤微生物削弱了水生-陆地系统补贴对植物生长的正向影响

土壤微生物削弱了水生-陆地系统补贴对植物生长的正向影响 水生-陆地系统补贴形成的联结作用在构建群落和调节生态系统功能方面发挥重要作用。在营养贫瘠的生态系统中(例如密歇根湖周围的淡水沙丘),水生-陆生系统补贴显得尤为重要。春季成年蠓在密歇根湖涌出,成群交配,然后死亡。蠓尸体在植物的基部形成土丘状,通过输入营养提高植物的生产力。然而,水生-陆地系统补贴对植物生产力的影响可能取决于其他生物的交互作用,特别是土壤微生物可能通过促进养分转化为植物可利用的形式或与植物竞争养分而发挥关键作用。在温室实验中,我们检验了湖生蠓(Chironomidae)的尸体和土壤微生物如何独立和相互影响一种常见沙丘草(沙拂子茅,Calamovilfa longifolia)的生长表现。为确定蠓是否影响土壤非生物特性,我们检验了添加蠓如何影响土壤养分和土壤湿度。研究结果显示,蠓极大地增加了植物生物量,但其效应的大小受土壤微生物的影响。在没有土壤微生物的情况下,添加蠓的植物生物量比没有添加的高7倍,而在有土壤微生物的情况下,植物生物量提高了3倍。蠓对植物生长的促进作用可能由于它们向土壤中输入养分所导致,因为与沙丘土壤相比,蠓的氮、磷、钾含量分别高100倍、10倍和150倍。我们的研究结果表明,土壤微生物可能与植物竞争这些养分。总之,我们发现蠓是重要的水生-陆地系统补贴,对密歇根湖沿岸植物生产力产生强烈和正向的影响,但水生-陆地系统补贴作用必须在生态群落内发生的复杂相互作用的背景下考虑。     

长江流域若干水体寡毛类区系组成及相似性分析

研究了长江流域十余个水体水栖寡毛类的区系组成及分布。共鉴定水栖寡毛类53种,隶3科27属,其中仙女虫科15属31种(占58.49%);颤蚓科11属20种(占37.74%);线蚓科1属2种(占3.77%).在河流、草型湖泊和藻型湖泊这三类水体中,以草型湖泊的物种数最多,达36种;其次为长江干流,34种;藻型湖泊仅24种。对寡毛类的种间关系及不同生境寡毛类种类组成的相似性进行了聚类分析,结果表明,寡毛类的种类分布具有明显的地域性,据此可将其划分为6类(A-F组).       

Modeling impacts of Yangtze River water transfer on water ages in Lake Taihu, China

To improve water quality and alleviate eutrophication in Lake Taihu, the third largest freshwater lake in China, a Yangtze River water transfer project was initiated in 2002 to bring water from the Yangtze River to Lake Taihu to dilute and divert pollutants out of the lake. We used a three-dimensional numerical model, Environmental Fluid Dynamics Code, to study the impacts of water transfer on the transport of dissolved substances in the lake by using the concept of water age. In particular, the influences of inflow tributaries and wind forcing on water age were investigated. Model results showed that the effect of water transfer on transport processes in the lake is strongly influenced by hydrodynamic conditions induced by wind and inflow/outflow tributaries. During the simulation year (2005), the water ages in Lake Taihu were highly variable both spatially and temporally, with a mean of approximately 130 days in summer and 230 days in the other seasons. Southeasterly winds—dominant in the summer—could improve the quality of water by reducing the water age in the eastern areas of the lake, which are used as a drinking water source, and in Meiliang Bay, the most polluted bay. In terms of dilution, the most efficient flow rate for transferred water was predicted to be approximately 100 m³/s. The spatial distribution of water ages showed that water transfer may preferentially enhance exchanges in some areas of the lake unless nutrient concentrations in the transferred water are reduced to a reasonable level. This study provides useful information for a better understanding of the complex hydrodynamic and mass transport processes in the lake, which is important for developing and implementing effective ecological restoration strategies in the region.     

Light absorption and photosynthesis of a benthic moss community: importance of spectral quality of light and implications of changing light attenuation in the water column

1. The underwater light climate and benthic moss communities of Grane Langsø were investigated in May 1997 to determine the potential effects on benthic production of changing water column attenuation and spectral quality of light.
2. A reduction in water clarity in the lake since the 1960s was manifested as a marked increase in the attenuation of blue light, relative to red light, which can be attributed to increased dissolved organic carbon.
3. The biomass of the benthic moss community ranged from a maximum of 195 gDW m⁻² at a depth of 4 m to 39 g DW m⁻² at a depth of 10 m and Drepanocladus exannulatus contributed 70% of the biomass at all depths.
4. Absorption of PAR by D. exannulatus was maximal in the highly pigmented youngest parts of the plant and these correspondingly showed the highest rates of net photosynthesis. The absolute amount of chlorophyll- a per g dry weight was greater at 10 m than 2 m, but the ratio of accessory pigments to chlorophyll- a did not change. Deep growing plants did not show adaptation to changed light quality.
5. Increased attenuation of blue light and the resultant overall decrease in water clarity is likely to impact negatively on net annual production of benthic macrophytes of Grane Langsø. Any further increase in dissolved organic carbon concentration has the potential to markedly decrease the depth to which mosses grow by reducing the length of time in a year during which net photosynthesis occurs.