An in silico analysis on the photoproteins Mnemiopsin 1 and Mnemiopsin 2 to explain the experimental results

Mnemiopsin 1 (Mn1) and Mnemiopsin 2 (Mn2) are photoproteins found in Mnemiopsis leidyi. We have tried to answer the question of whether the structural features of photoproteins can explain the observed activity data. According to the activity measurements data, they have the same characteristic wavelength. However, the initial intensity of Mn2 is significantly higher than that of Mn1, and decay time of Mn1 (0.92 s⁻¹) is lower than that of Mn2 (1.46 s⁻¹). The phylogenetic analysis demonstrates that, compared with Obelin and Aequorin from Obelia longissima and Aequorea victoria, respectively, a gene modification event may have caused the expansion of the N-terminal side of all photoproteins from M. leidyi. An in silico study has shown that the stability of the photoprotein–substrate complex of Mn2 is higher than that of Mn1, indicating a higher affinity of the substrate for Mn2 compared with Mn1. It was revealed that the active EF-hand loops 1 and III in Mn2 is locally more rigid compared with those in Mn1. We concluded that different stability of the photoprotein complexes leads to different initial intensity. While different patterns of the local dynamics of loops I and III may influence the decay rate.     

Effect of light intensity and ammonium-N on carotenogenesis ofTrentepohlia odorata andDunaliella bardawil

AxenicTrentepohlia odorata was cultured at three different NH₄Cl levels (3.5 × 10^–2, 3.5 × 10^–3, 3.5 × 10^–4 M) and three different light intensities (48, 76, 122 µmol m^–2 s^–1). Chloride had no effect on growth over this range of concentration. High light intensity and high NH₄Cl concentration enhanced the specific growth rate. The carotenoid content increased under a combination of high light intensity and low N concentration. WhenD. bardawil was exposed to the same combination of growth conditions, there was an increase in its carotenoid content. The light saturation and the light inhibition constants (K _s andK _i, respectively) for growth, and the saturation constant (K _m) for NH₄Cl were determined. TheK _s andK _i values were higher inT. odorata (66.7 and> 122 mol m^–2 s^–1, respectively) than inD. bardawil (5.1 and 14.7 µmol m^–2 s^–1, respectively). TheK _m value determined at 122 µmol m^–2 s^–1, however, was lower inT. odorata (0.048 µM) than inD. bardawil (0.062 µM).Author for correspondence     

Influence of light and temperature on photoinhibition of photosynthesis inSpirulina platensis

Photoinhibition of photosynthesis and its recovery in the cyanobacteriumSpirulina platensis was studied to find how photosynthetic rates were influenced by light and temperature. By exposing cell samples from a turbidostat culture to combinations of light and temperature, a connection between light, temperature and photoinhibition was found. The experiments showed that a 10 degree increase from 20 °C to 30 °C considerably reduced the photoinhibition. At 25 °C a photon flux density of 1720 µmol m^–2 s^–1 reduced the photosynthetic rate by 50 % in 1 h, but a similarly high photon flux density had nearly no negative effect at 35 °C. Reactivation in low light from 50% photoinhibition was fast and complete in 60 min at 30 °C, while at 20 °C only about 1/6 of the full capacity was regained in the same time. Addition of the protein synthesis inhibitor streptomycin to cultures undergoing photoinhibition and regeneration indicated the presence also in this organism of a repair mechanism based on protein synthesis.Author for correspondence     

A mechanistic spatio-temporal modeling of COVID-19 data

Understanding the evolution of an epidemic is essential to implement timely and efficient preventive measures. The availability of epidemiological data at a fine spatio-temporal scale is both novel and highly useful in this regard. Indeed, having geocoded data at the case level opens the door to analyze the spread of the disease on an individual basis, allowing the detection of specific outbreaks or, in general, of some interactions between cases that are not observable if aggregated data are used. Point processes are the natural tool to perform such analyses. We analyze a spatio-temporal point pattern of Coronavirus disease 2019 (COVID-19) cases detected in Valencia (Spain) during the first 11 months (February 2020 to January 2021) of the pandemic. In particular, we propose a mechanistic spatio-temporal model for the first-order intensity function of the point process. This model includes separate estimates of the overall temporal and spatial intensities of the model and a spatio-temporal interaction term. For the latter, while similar studies have considered different forms of this term solely based on the physical distances between the events, we have also incorporated mobility data to better capture the characteristics of human populations. The results suggest that there has only been a mild level of spatio-temporal interaction between cases in the study area, which to a large extent corresponds to people living in the same residential location. Extending our proposed model to larger areas could help us gain knowledge on the propagation of COVID-19 across cities with high mobility levels.     

闽南渔场主要游泳动物时空生态位特征及其影响因素

根据2019—2021年在闽南渔场进行的秋季、冬季、春季和夏季四个航次定点底拖网调查资料,利用相对重要性指数、种群聚集强度、生态位宽度、生态位重叠及冗余分析对主要游泳动物时空生态位特征及其影响因素进行研究。结果表明,(1)调查海域共鉴定出游泳动物214种,主要优势种有18种,优势种存在明显的季节更替现象;夏季优势种的丛生指数和平均拥挤度较高,春季较低;(2)在时间维度上,须赤虾(Metapenaeposis barbata De Haan)生态位宽度最大(0.99), 7组种对时间生态位重叠值等于1.00;在空间维度上,带鱼(Trachurus japonicus Temminck&Schlegel)生态位宽度最大(2.57),空间生态位重叠值超过0.6的种类占71.3%;在时空维度上,带鱼生态位宽度最大(2.45),鹿斑仰口鲾(Leiognathus ruconius Hamilton)与赤鼻棱鳀(Thrissa kammalensis Bleeker)时空生态位重叠值最大(0.94);(3)冗余分析表明,底层温度和底层盐度是影响闽南渔场主要游泳动物时空生态位特征的重要环境因...     

CHARACTERIZATION AND BIOLOGICAL IMPLICATIONS OF SCYTONEMIN,A CYANOBACTERIAL SHEATH PIGMENT1

Scytonemin, the yellow-brown pigment of cyanobacterial (blue-green algal) extracellular sheaths, was found in species thriving in habitats exposed to intense solar radiation. Scytonemin occurred predominantly in sheaths of the outermost parts or top layers of cyanobacterial mats, crusts, or colonies. Scytonemin appears to be a single compound identified in more than 30 species of cyanobacteria from cultures and natural populations. It is lipid soluble and has a prominent absorption maximum in the near-ultraviolet region of the spectrum (384 nm in acetone; ca. 370 nm in vivo) with a long tail extending to the infrared region. Microspectrophotometric measurements of the transmittance of pigmented sheaths and the quenching of ultraviolet excitation of phycocyanin fluorescence demonstrate that the pigment was effective in shielding the cells from incoming near-ultraviolet-blue radiation, but not from green or red light. High light intensity (between 99 and 250 μmol photon · m^?2· S^?1, depending on species) promoted the synthesis of scytonemin in cultures of cyanobacteria. In cultures, high light intensity caused reduction in the specific content of Chl a and phycobilins, increase in the ratio of total carotenoids to Chl a, and scytonemin increase. UV-A (320–400 nm) radiation was very effective in eliciting scytonemin synthesis. Scytonemin production was physiological and not due to a mere photochemical conversion. These results strongly suggest that scytonemin production constitutes an adaptive strategy of photoprotection against short-wavelength solar irradiance.     

Comparison of two cacao (Theobroma cacao L.) clones for the effect of pollination intensity on fruit set and seed content

We compared the influence of pollination intensity (PI) on fruit set and seed number per pod in two cacao (Theobroma cacao L.) clones, IFC5 (Forastero Lower-Amazon Amelonado), which is self-compatible and known to produce a high number of seeds per pod under open pollination, and SCA6 (Forastero Upper-Amazon), which is self-incompatible and known to produce a low number of seeds per pod under open pollination. With both clones, PI had a positive effect on fruit set, with the maximum rate requiring more than 150 pollen grains per pod. One-half of the maximum rate of fruit set was reached with 39 pollen grains per pod for SCA6, and 78 for IFC5. With SCA6, a significant positive effect of PI on seed number per pod was also observed, with maximum seed number requiring more than 200 pollen grains per pod. In contrast, seed numbers with IFC5 were approximately equal over the PI range 100–800 pollen grains per pod. Patterns of seed number per pod were compared after: (1) open insect pollination, (2) low-intensity hand pollination and (3) high-intensity hand pollination. The patterns obtained with IFC5 under open pollination showed a peak of 40–50 seeds per pod, whereas the distribution patterns were more even with SCA6. The pattern of seed number under open pollination was similar to that obtained with high-intensity hand pollination for IFC5, and with low-intensity hand pollination for SCA6. We concluded that the high number of seeds per pod observed with IFC5 under natural insect pollination may be explained by a high number of compatible self-pollen grains on the stigma and by a severe drop of low-pollinated flowers eliminating potential lowfilled fruits. With SCA6, however, the number of compatible pollen grains deposited on the stigma was probably low under open pollination, and the flowers required lower pollen quantities to set fruit, which resulted in a high frequency of low seed numbers per fruit. This difference in the capacity to set low-seeded fruits might be considered as an adaptive trait related to the mode of reproduction.     

Foraging success of largemouth bass at different light intensities: implications for time and depth of feeding

Laboratory feeding trials were conducted to determine how light intensity affects foraging success by the visual piscivore, the largemouth bass ( Micropterus salmoides ). Foraging success was greater than 95% at light levels ranging from low intensity daylight (2.43 × 10² lx) to moonlight (3 × 10⁻³ lx), but declined significantly to 62% at starlight (2 × 10⁻⁴ lx) and near 0% in total darkness. Over a range of low to high water clarities (0.5, 2.0, and 4.0 m Secchi depth), estimated depth limits for feeding during the day ranged between 5.5 to 44 m and from 1.6 to 13 m at night during a full moon. At starlight, light intensity rapidly attenuated to a level below the feeding threshold within 0.5 m of the surface at all water clarities. The depth of the water column available for feeding in low clarity water (0.5 m Secchi) was 67 and 75% less than at moderate (2.0 m Secchi) and high (4.0 m Secchi) water clarities. The findings illustrate how differences in the light environment can have important ramifications for predator-prey interactions.     

Carotenoid content in growing cells of Haematococcus pluvialis during a sunlight cycle

Under certain culture conditions, cells of the chlorophyte Haematococcus pluvialis accumulate significant amounts of astaxanthin. This study describes biomass and carotenoid production during a sunlight cycle in a continuous culture of growing cells of H. pluvialis and shows that these two parameters are under the control of irradiance. The hourly carotenoid production increases with light intensity and, in our culture conditions, carotenoid accumulation occurs in a few hours and without any morphological change in the algae. These carotenoids seem to be efficient in protecting algal cells against photoinhibition damage if their content is greater than 1% dry biomass. Below this concentration, that is to say in the early hours of high light intensity, dry biomass decreases due to cell lysis. The results demonstrate that secondary carotenoid accumulation in H. pluvialis may occur in the active growth phase and is stimulated from the first hours of sunlight illumination.     

科尔沁沙质草甸草场不同牧压条件植物群落分异数量分析

本文用ＴＷＩＮＳＰＡＮ分类和ＰＣＡ及ＤＣＡ排序技术分析了沙质草甸草场放牧试验引起地植物群落分异的特征,主要结论为：放牧强度是引起群落分异的主要原因,群落的分异主要表现在高度和现存生物量上。放牧引起群落变化的动力主要是放牧强度。而无牧条件下群落变化的主要动力是植物间的相互作用。当地的放牧强度处于中牧与重牧之间,属于过度放牧。这是引起草场退化及沙漠化的主要原因之一。