Phylogeographic and demographic effects of Pleistocene climatic fluctuations in a montane salamander, Plethodon fourchensis

Climatic changes associated with Pleistocene glacial cycles profoundly affected species distributions, patterns of interpopulation gene flow, and demography. In species restricted to montane habitats, ranges may expand and contract along an elevational gradients in response to environmental fluctuations and create high levels of genetic variation among populations on different mountains. The salamander Plethodon fourchensis is restricted to high-elevation, mesic forest on five montane isolates in the Ouachita Mountains. We used DNA sequence data along with ecological niche modelling and coalescent simulations to test several hypotheses related to the effects of Pleistocene climatic fluctuations on species in montane habitats. Our results revealed that P. fourchensis is composed of four well-supported, geographically structured lineages. Geographic breaks between lineages occurred in the vicinity of major valleys and a narrow high-elevation pass. Ecological niche modelling predicted that environmental conditions in valleys separating most mountains are suitable; however, interglacial periods like the present are predicted to be times of range expansion in P. fourchensis . Divergence dating and coalescent simulations indicated that lineage diversification occurred during the Middle Pleistocene via the fragmentation of a wide-ranging ancestor. Bayesian skyline plots showed gradual decreases in population size in three of four lineages over the most recent glacial period and a slight to moderate amount of population growth during the Holocene. Our results not only demonstrate that climatic changes during the Pleistocene had profound effects on species restricted to montane habitats, but comparison of our results for P. fourchensis with its parapatric, sister taxon, P. ouachitae , also emphasizes how responses can vary substantially even among closely related, similarly distributed taxa.     

Predator density and dissolved oxygen affect body condition of <Emphasis Type="Italic">Stenonema tripunctatum</Emphasis> (Ephemeroptera,Heptageniidae) from intermittent streams

The effects of population density, fish density, and dissolved oxygen on body condition of late-instar nymphs of Stenonema tripunctatum (Ephemeroptera, Heptageniidae) were investigated using nymphs sampled from isolated, upland stream pools over summer in central Arkansas, USA. All three factors exhibited high variation among pools. Body condition was negatively related to fish density, and positively related to dissolved oxygen (when included in the model). High fish densities may be related to low body condition because they cause reduced foraging or force earlier emergence at small body sizes. These results emphasize the combined effects of biotic and abiotic factors on body condition in mayflies, and support earlier findings that population density is a less-important factor.     

Historic cycles of fragmentation and expansion in Parnassius smintheus (papilionidae) inferred using mitochondrial DNA

Climate oscillations of the Quaternary drove the repeated expansion and contraction of ecosystems. Alpine organisms were probably isolated in sky island refugia during warm interglacials, such as now, and expanded their range by migrating down-slope during glacial periods. We used population genetic and phylogenetic approaches to infer how paleoclimatic events influenced the distribution of genetic variation in the predominantly alpine butterfly Parnassius smintheus. We sequenced a 789 bp region of cytochrome oxidase I for 385 individuals from 20 locations throughout the Rocky Mountains, ranging from southern Colorado to northern Montana. Analyses revealed at lease two centers of diversity in the northern and southern Rocky Mountains and strong population structure. Nested clade analysis suggested that the species experienced repeated cycles of population expansion and fragmentation. The estimated ages of these events, assuming a molecular clock, corresponded with paleoclimatic data on habitat expansion and contraction over the past 400,000 years. We propose that alpine butterflies persisted in an archipelago of isolated sky islands during interglacials and that populations expanded and became more connected during cold glacial periods. An archipelago model implies that the effects of genetic drift and selection varied among populations, depending on their latitude, area, and local environment. Alpine organisms are sensitive indicators of climate change and their history can be used to predict how high-elevation ecosystems might respond to further climate warming.     

采伐对小兴安岭落叶松-泥炭藓沼泽温室气体排放的影响

利用静态箱-气相色谱法,研究了择伐和皆伐对小兴安岭落叶松-泥炭藓沼泽CH4、CO2、N2O排放的影响.结果表明:采伐改变了落叶松-泥炭藓沼泽CH4和N2O的季节排放规律,其中对照样地的CH4为夏季吸收、秋季排放,N2O夏秋季吸收;择伐样地的CH4和N2O在夏季集中排放;皆伐样地的CH4在夏秋季排放,N2O则在夏季吸收、秋季排放.但采伐对CO2季节排放规律的影响,均为夏季春季秋季.采伐改变了CH4、CO2和N2O的源汇功能,对照样地为CO2的排放源、CH4和N2O的弱吸收汇;采伐地的CO2排放量下降了1/4,并转化为N2O弱排放源,为CH4的弱排放源或强排放源.择伐样地温室效应贡献潜力较对照样地下降了24.5%,皆伐地则提高了3.2%.     

Elevational gradients during the Late-Glacial/Holocene vegetational transition in southern Bulgaria

The Late Glacial and early-Holocene vegetational history of a newly dated pollen and macrofossil diagram from Besbog, a cirque lake at 2250 m just above the forest limit in the Pirin Mountains of southwestern Bulgaria, is compared with a newly dated pollen diagram for the mire Shiroka Polyana at 1400 m in the conifer forest of the nearby Rhodope Mountains in order to investigate the chronology of major changes in the vegetation at different elevations. In the Lake Besbog record the non-arboreal pollen assemblage of the Late Glacial changed abruptly to that of Betula, Quercus and other deciduous types. The date for this change is about 11.6 ka cal b.p. The Quercus assemblage may be composed of pollen blown from intermediate elevations, to which deciduous forest had expanded because of higher summer temperatures related to high summer insolation. At Shiroka Polyana (1400 m) in the modern conifer belt, a similar change did not occur until about 8.8 ka cal b.p. The persistence of the dry steppe or steppe forest in the early Holocene at this lower site can also be attributed to high summer insolation. Thus as atmospheric temperature increased at the end of the Late Glacial, deciduous forests expanded first at intermediate elevations in the Pirin Mountains and only later in the Rhodope Mountains at lower elevations as summer insolation decreased.     

秦岭大熊猫冬春季节对巴山木竹竹林生长指标的选择

2004~2005年冬季的12月、1月和春季的4月、5月,在秦岭山系南坡佛坪自然保护区内就大熊猫对构成其主要栖息地和食物来源的巴山木竹竹林的选择进行研究后的结果表明:在冬季,大熊猫栖息地多为幼竹与死竹比例基本持平、密度稳定的巴山木竹竹林,主要取食老竹;在春季,大熊猫更偏好选择竹子密度和盖度略低、竹子粗壮高大、幼竹与竹笋比例高的竹林活动,主要取食幼竹。大熊猫春季栖息地幼竹比例通常高过死竹比例,竹林密度处于增长期。竹林进入发笋期后,稀疏、高大的竹林下的粗大竹笋成为大熊猫的主要食物来源。     

Invertebrate community and stream substrate responses to woody debris removal from an ice storm-impacted stream system, NY USA

We assessed the influence of ice-storm-derived debris dams on aquatic macroinvertebrates and stream substrates in a high-gradient watershed in the eastern Adirondack Mountains of New York State. Using a modification of electrofishing techniques, invertebrates were collected once before (June 2000) and once after (June 2001) wood removal from the downstream reach in each of six pairs of reaches (second and third-order streams). Stream substrates were also mapped in 2000 and 2001 to evaluate shifts in dominant substrates within a reach following wood removal. The following metrics were used to compare the invertebrate communities before and after wood removal: genera similarity, Shannon–Weiner equitability, taxa richness, dominant taxon, percent dominance and functional feeding group relative abundance. The changes in removal reaches were evaluated relative to changes in upstream reference reaches using a Before-After Control-Impact (BACI) design and analysis. Stream substrates did not change significantly in response to wood removal, although a trend toward coarser substrates was observed following removal. Following wood removal, the relative proportion of grazers increased upstream and downstream from removed dams in all streams; however, comparisons of other metrics indicated no significant response to removal. Invertebrate responses to wood removal were lower than expected, perhaps due to the presence of abundant boulder-formed pools in this high gradient system. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

No long-term effect of black bear removal on elk calf recruitment in the southern Appalachians

In 2001 and 2002, 52 elk (Cervus canadensis; 21 males, 31 females), originally obtained from Elk Island National Park, Alberta, Canada, were transported and released into Cataloochee Valley in the northeastern portion of Great Smoky Mountains National Park (GRSM, Park), North Carolina, USA. The annual population growth rate (λ) was negative (0.996, 95% CI = 0.945–1.047) and predation by black bears (Ursus americanus) on elk calves was identified as an important determinant of population growth. From 2006 to 2008, 49 bears from the primary elk calving area (i.e., Cataloochee Valley) were trapped and translocated about 70 km to the southwestern portion of the Park just prior to elk calving. Per capita recruitment (i.e., the number of calves produced per adult female that survive to 1 year of age) increased from 0.306 prior to bear translocation (2001–2005) to 0.544 during years when bears were translocated (2006–2008) and λ increased to 1.118 (95% CI = 1.096–1.140). Our objective was to determine whether per capita calf recruitment rates after bear removal (2009–2019) at Cataloochee were similar to the higher rates estimated during bear removal (i.e., long-term response) or if they returned to rates before bear removal (i.e., short-term response), and how those rates compared with recruitment from portions of our study area where bears were not relocated. We documented 419 potential elk calving events and monitored 129 yearling and adult elk from 2001 to 2019. Known-fate models based on radio-telemetry and observational data supported calf recruitment returning to pre-2006 levels at Cataloochee (short-term response); recruitment of Cataloochee elk before and after bear relocation was lower (0.184) than during bear relocation (0.492). Recruitment rates of elk outside the removal area during the bear relocation period (0.478) were similar to before and after rates (0.420). In the Cataloochee Valley, cause-specific annual calf mortality rates due to predation by bears were 0.319 before, 0.120 during, and 0.306 after bear relocation. In contrast, the cause-specific annual mortality rate of calves in areas where bears were not relocated was 0.033 after the bear relocation period, with no bear predation on calves before or during bear relocation. The mean annual population growth rate for all monitored elk was 1.062 (95% CI = 0.979–1.140) after bear relocation based on the recruitment and survival data. Even though the effects of bear removal were temporary, the relocations were effective in achieving a short-term increase in elk recruitment, which was important for the reintroduction program given that the elk population was small and vulnerable to extirpation.     

Effect of acclimation temperature on the upper thermal tolerance of Colorado River cutthroat trout Oncorhynchus clarkii pleuriticus: thermal limits of a North American salmonid

In an effort to explore the thermal limitations of Colorado River cutthroat trout Oncorhynchus clarkii pleuriticus, the critical thermal maxima (T_cmax) of 1+ year Lake Nanita strain O. c. pleuriticus were evaluated when acclimated to 10, 15 and 20° C. The mean ±s.d. T_cmax for O. c. pleuriticus acclimated to 10° C was 24·6 ± 2·0°C (n = 30), for 15° C‐acclimated fish was 26·9 ± 1·5° C (n = 23) and for 20° C‐acclimated fish was 29·4 ± 1·1° C (n = 28); these results showed a marked thermal acclimation effect (Q₁₀ = 1·20). Interestingly, there was a size effect within treatments, wherein the T_cmax of larger fish was significantly lower than that of smaller fish acclimated to the same temperature. The critical thermal tolerances of age 0 year O. c. pleuriticus were also evaluated from three separate populations: Lake Nanita, Trapper Creek and Carr Creek reared under ‘common‐garden’ conditions prior to thermal acclimation. The Trapper Creek population had significantly warmer T_cmax than the Lake Nanita population, but that of the Carr Creek fish had T_cmax similar to both Trapper Creek and Lake Nanita fish. A comparison of these O. c. pleuriticus T_cmax results with those of other stream‐dwelling salmonids suggested that O. c. pleuriticus are less resistant to rapid thermal fluctuations when acclimated to cold temperatures, but can tolerate similar temperatures when acclimated to warmer temperatures.     

Effects of habitat loss and limitation on effective population size and inbreeding rates of Walia ibex (Capra walie) in Ethiopia

The effects of habitat loss and limitation on effective population size and inbreeding rates of Walia ibex (Capra walie) were assessed at Simien Mountains National Park. Total direct census was conducted in 2009. Historical data were obtained from park offices and literatures. Effective population sizes (N_e), inbreeding rates (ΔF) and heterozygosity losses to the whole and subdivided population per habitat were estimated. Correlations (r) between the two repeated direct censuses were positive (r = 0.99, P < 0.01). The mean N_e and ΔF (%/year) per study sites were 65.34 ± 59.45 and 0.0286 ± 0.032, respectively. The ΔF of the whole population of C. walie was 0.228 ± 0.011. The ΔF was negatively correlated with N_e (r = ?0.799, P < 0.05). The mean ΔF per fragmented habitat ranged from 0.3 (Cheneck) to 7.7% (Buait ras). The highest ΔFs per year were observed in Buait ras (7.7%), Adarmaz (7.4%) and Sankaber (4.5%). The mean heterozygosity loss per total population was 0.235 ± 0.42, which was about 23.5%. The differences in N_e and ΔF among the population per habitat were the results of habitat limitation, which in turn reduce the genetic variability and foster losses of heterozygosity.