RFLP mapping of partially sequenced leaf cDNA clones in maize

We report here the results of mapping a set of 92 leaf cDNA clones in maize. The ends of each of these cDNA clones have previously been partially sequenced, and the sequence comparison has revealed the putative function for 28 clones. It is expected that the RFLP map developed using these expressed sequence tags will be of great importance for future maize genome analysis, such as for PCR-based gene mapping or gene function identification.Contribution from the Missouri Agricultural Experiment Station. Journal Series N. 12,019.     

Interaction of mithramycin with isolated GC and CG sites

We have studied the interaction of the GC-specific, minor groove-binding ligand, mithramycin, with cloned DNA inserts containing isolated GC and CG sites flanked by regions of (AT)_n and A_n · T_n using DNase I and hydroxyl radical footprinting. We find that mithramycin binds to GC better than CG and that AGCT is a better site than TGCA. Sites flanked by (AT)_n appear to be bound better than those surrounded by A_n · T_n. Although no footprints are produced at T₉GCA₉ and T₁₅CGA₁₅, DNase I cleavage is enhanced with the GC sites suggesting that there is some interaction with the ligand. Mithramycin also alters the DNase I cleavage of (GA)_n · (CT)_n.     

Measurement of organic-35S and organic-S in lake sediments: Methodological considerations

Three protocols for the determination of inorganic and organic sulfur fractions were tested for their suitability to estimate total indigenous organic sulfur (S_org) and³⁵S_org formed from added³⁵SO₄ ^2– in sediments of chemically dilute lakes in the ELA. The protocols tested have all been reported in the literature. It was found that two protocols involving sequential analyses for S fractions following acid treatment gave estimates of both S_org and³⁵S_org up to 87% lower than a non-sequential protocol. The low estimates were largely due to hydrolysis and solubilization of solid phase S which was then removed in a rinsing step. The non-sequential protocol, in which total reduced inorganic sulfur and total sulfur were determined on separate aliquots, is recommended as the most reliable of the three. Individual analyses in this protocol were verified for these lake sediments using a variety of S standards.     

Middle paleozoic waulsortian-type mud mounds in Southern Fergana (Southern Tien-Shan,commonwealth of independent states): The shallow-water atoll model

Summary Several Waulsortian-type mud mounds nearly 500 m thick and about 5 km long occur in the Middle Paleozoic carbonate section of the Aktur nappe in the mountains on the right bank of Isfara river. These buildups form a well developed barrier system that stretches along the South Ferganian carbonate platform margin and divides the carbonate complex into a fore-reef and a back-reef part. The time of the mounds' most active growth was from the Late Silurian (Ludlow) to the Middle Devonian (Eifel). Three main facies types can be recognized in the mud mounds: 1. micritic core facies, 2. sparitic flank facies and 3. loferitic capping facies. The central massive or crudely bedded part of the mounds consists of white or light grey clotted micrite. Macrofossils are rare. The sparitic flank facies in contrast consists of coarse and densely packed crinoidal wackestone-floatstones with some brachiopod shell debris. Solitary rugose corals, tabulate corals, stromato-poroids and fragments of mollusks are also abundant. The tops of the mounds are usually covered with loferitic pelmicrites or oolitic grainstone caps. Stromatactis-like structures are very rare and poorly developed in the South Ferganian mud mounds. However, almostin all such mounds horizons of calcitic breccias can be found. In order to explain all the features found in the Fergana mounds an ‘atoll-like’ model has been proposed which starts the evolution of the mud mounds with a small nucleus bioherm. The main stage of the evolution corresponds to an atoll-like structure developing on the surface of shallow water platforms. White clotted micrite of the mound core facies is interpreted as a accumulation of fine-grained sediment in an inner lagoon flanked by crinoidal bar deposits. The mound flank facies represents the atoll rim deposits from where the carbonate mud is derived. The capping loferitic facies is considered as tidal flat deposit that developed on top of the buildups during the last stage of its evolution. The knoll shape of the mounds is explained by the retreat of the atoll flanking crinoidal bars back into the inner lagoon during the rise in sea level. Stromatactis-like structures of small cavities filled with sparry calcite owe their existence to burrowing organisms. Calcitic breccias are interpreted as paleokarst collapse breccias. They indicate that the tops of the mud mound became subaerially exposed. Other evidence for a subaerial exposure can be seen in the occurrence of Variscian ‘black and white’ limestone gravel on the tops of some mud mounds. According toWard et al. (1970) these sediments were produced above the sea level at the edge of hypersaline lakes situated on islands.     

Logistic曲线参数的一个最佳估计方法

本文提出用O．628优选法和SAS/STAT软件NLIN模块中的DUD法,对Logistic曲线中的参数k,a和b可得到最佳估计。     

日本落叶松引种区林地棕壤肥力的多变量分析

本研究从日本落叶松引种区林地棕壤9个主要理化性状及与之配套的17株优势木材料入手,采用多变量分析方法筛选出影响该地区日本落叶松生长的主要肥力因子为氮及磷,並据此将该林地棕壤划分为9个肥力类型。在进行聚类分析时,本研究的创新在于以任意二样本点在各主成份上的坐标值为变量,以各主成份的贡献率为权重,重新定义欧氏距离公式,对主成份坐标值聚类,使其更为合理、直观。同时采用回归分析拟合出理化性状间的多个回归方程。此研究为该林地科学施肥、速生丰产、永续利用提供了可靠的数量依据。     

不同年龄大鼠主动脉壁凝集素组织化学的图像分析研究

本文利用凝集素组织化学的方法,结合应用ＩＢＡＳ图像分析系统对不同年龄（１０天,６个月及２年）大鼠主动脉壁的凝集素受体进行研究。在所采用的六种生物素化凝集素中（ＣｏｎＡ、ＲＣＡＩ、ＵＥＡ－Ｉ、ＰＮＡ、ＳＢＡ及ＷＧＡ）,ＣｏｎＡ、ＲＣＡ－Ｉ及ＷＧＡ在大鼠主动脉壁呈阳性反应,它们在各年龄组大鼠主动脉壁内膜及外膜均表现出强阳性反应,而在中膜反应较弱。ＵＥＡ－Ｉ、ＰＮＡ和ＳＢＡ表现出无明显反应。此外,三种阳性反应凝集素在主动脉壁的反应产物随增龄而减少,图像分析结果显示其灰度值随增龄的变化趋势是逐渐增加。上述结果提示,大鼠主动脉壁含α－Ｄ－Ｍａｎｎｏｓｅ、β－ＤＧａｌａｃｔｏｓｅ、ｓｉａｌｉｃａｃｉｄ或Ｎ－ａｃｅｔｙｌ－Ｄ－Ｇｌｕｃｏｓａｍｉｎｅ残基的糖复合物含量随增龄而减少,可能使ＬＤＬ易于通透而致脂质在动脉壁沉积,加速脂纹病变的形成,从而易于导致动脉粥样硬化。     

A protein alignment scoring system sensitive at all evolutionary distances

Summary Protein sequence alignments generally are constructed with the aid of a substitution matrix that specifies a score for aligning each pair of amino acids. Assuming a simple random protein model, it can be shown that any such matrix, when used for evaluating variable-length local alignments, is implicitly a log-odds matrix, with a specific probability distribution for amino acid pairs to which it is uniquely tailored. Given a model of protein evolution from which such distributions may be derived, a substitution matrix adapted to detecting relationships at any chosen evolutionary distance can be constructed. Because in a database search it generally is not known a priori what evolutionary distances will characterize the similarities found, it is necessary to employ an appropriate range of matrices in order not to overlook potential homologies. This paper formalizes this concept by defining a scoring system that is sensitive at all detectable evolutionary distances. The statistical behavior of this scoring system is analyzed, and it is shown that for a typical protein database search, estimating the originally unknown evolutionary distance appropriate to each alignment costs slightly over two bits of information, or somewhat less than a factor of five in statistical significance. A much greater cost may be incurred, however, if only a single substitution matrix, corresponding to the wrong evolutionary distance, is employed.