Tumor-associated macrophages trigger MAIT cell dysfunction at the HCC invasive margin

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Mettl3-m6A-Creb1 forms an intrinsic regulatory axis in maintaining iNKT cell pool and functional differentiation

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A note on the hypothesis: Protein polymorphism as a phase of molecular evolution

Summary Assuming that various kinds of balancing selection contribute only a small fraction of naturally occuring genetic variation, it is shown that if a fair fraction of evolutionary change in protein is due to neutral mutants, most of naturally occurring polymorphism must be due to random drift of neutral genes.     

Fine-scale food hoarding decisions in New Zealand Robins ( Petroica australis ): is inter-sexual competition important?

Competition for cache retrieval is hypothesised to influence food hoarding intensity. Previous work has tested this hypothesis by evaluating food hoarding rates during foraging bouts when animals are exposed to different levels of competition for cache retrieval. Little is known about how competition might influence fine-scale food hoarding decisions within foraging bouts. I evaluated fine-scale food hoarding decisions of New Zealand Robins (Petroica australis) by offering mealworms to competitively dominant males and subordinate females, both when they were alone and when they foraged together. I then compared food hoarding rates of sequentially handled prey between sexes and social conditions by assessing how the total number of prey cached increased with the total number of prey handled. Relationships for solitary females, solitary males and paired males were non-linear, indicating that they were more likely to consume initially handled prey, and increasingly likely to cache subsequently handled prey items. Non-linear rates of food hoarding may result from declines in the energetic value of prey that are consumed and stored internally as birds become satiated. Somewhat differently, the relationship for paired females was linear, indicating that paired females make a single food hoarding decision based on bout-level foraging conditions, which results in constant fine-scale food hoarding rates. Constant food hoarding rates in paired females, which experience the strongest competitive effects of any treatment, suggest that food consumption is consistently more advantageous than food hoarding under these conditions, regardless of satiation level. Overall results from this study indicate that New Zealand Robins continuously update food hoarding decisions according to their competitive environment and satiation levels, resulting in scale-dependent patterns in food hoarding intensity.     

A microtubule organizing centre (MTOC) is responsible for the production of the sperm flagellum in Matsucoccus feytaudi (Hemiptera: Coccoidea)

A microtubule organizing centre (MTOC) has been described in the spermatid of the hemipteran Matsucoccus feytaudi (Coccoidea). This structure, revealed as a fluorescent ring by treatment with γ-tubulin antibody, gives rise to a bundle of microtubules which surrounds the elongated cylindrical nucleus. This microtubule bundle has been considered an atypical sperm flagellum provided with sperm motility. A comparison of the M. feytaudi MTOC with the material associated with the centriole of Drosophila melanogaster spermatids confirms the great similarity between the two structures, both involved in the nucleation of microtubules. Like the D. melanogaster material associated with the centriole, the M. feytaudi MTOC is a transient structure which disappears or degenerates at the end of spermiogenesis and is no longer visible in the mature sperm.     

Species constancy depends on plot size – a problem for vegetation classification and how it can be solved

Question: While it is well known that species richness depends on plot size, it is not generally recognised that the same must be true for constancy. Accordingly, many authors use varying plot sizes when classifying vegetation based on the comparison of constancies between groups of plots. We ask whether the constancy‐area relationship follows a general rule, how strong the effect of plot sizes is on constancies, and if it is possible to correct constancies for area. Location: For empirical evaluation, we use data from plant communities in the Czech Republic, Sweden and Russia. Methods: To assess the potential influence of differences in plot size on constancies, we develop a mathematical model. Then, we use series of nested plot species richness data from a wide range of community types (herbaceous and forest) to determine the parameters of the derived function and to test how much the shape of the constancy‐area relationship depends on taxa or vegetation types. Results: Generally, the constancy‐area relationship can be described by C (A)=1?(1?C₀)^{(A/A0)^d}, with C being constancy, A area, C₀ known constancy on a specific area A₀, and d a damping parameter accounting for spatial autocorrelation. As predicted by this function, constancies in plant communities always varied from values near 0% to near 100% if plot sizes were changed sufficiently. For the studied vegetation types, a two‐ to fourfold increase in plot size resulted in a change of conventional constancy classes, i.e. an increase of constancy by 20% or more. Conclusions: Vegetation classification, which largely relies on constancy values, irrespective of whether traditional or modern fidelity definitions are used, is strongly prone to distorting scale effects when relevés of different plot sizes are combined in studies. The constancy‐area functions presented allow an approximate transformation of constancies to other plot sizes but are flawed by idiosyncrasies in taxa and vegetation types. Thus, we conclude that the best solution for future surveys is to apply uniform plot sizes within a few a priori delimited formations and to determine diagnostic species only within these formations. Finally, we suggest that more detailed analyses of constancy‐area relationships can contribute to a better understanding of species‐area relationships because the latter are the summation of the first for all species.     

A Novel Method to Analyze the Similarity of Biological Sequences

Abstract

In this paper, we propose a new method based on the 2-D graphical representation to analyze the similarity of biological sequences and classify the protein secondary structure sequences. Instead of computing some characteristics from the distance matrix, the average area surrounded by the curve and X axis is computed as a new invariant. The new method is tested on two sets: the coding sequences of 30 mitochondrial genes from NCBI and 12 protein secondary structure sequences. The similarity/disimilarity and phylogenetic tree (dendrogram) of these sequences verify the validity of our method.     

Effects of hedgerows on bats and bush crickets at different spatial scales

Biodiversity is threatened by the loss and fragmentation of habitats. The role of hedgerows in maintaining biodiversity is well established, but few studies have addressed the importance for biodiversity of the intrinsic characteristics of hedgerows and the quality of hedgerow networks along a spatial scale. We examined three quality indices providing information at different territorial levels: density in the landscape, structural diversity and wood production. We performed an acoustic survey in a grassland to estimate the species abundance and community composition of bats (9 taxa) and bush crickets (11 species). Using an approach based on species and traits, we assessed how hedgerow quality influenced the activity of these taxa at different spatial scales (from 50 to 1000 m) and focused on three types of traits: bush cricket mobility ability, bat foraging strategy and habitat specialization. In general, our results showed the importance of hedgerow quality for bats and bush crickets, but the strength of the association between taxa and hedgerows varied substantially among the species and the spatial scales. Although it depends on the taxa, the production, density and structural diversity of hedgerows each had an overall positive effect. Our results suggested that these effects were generally more important at large scales. The scale effect of the production index is the best predictor of activity for bat and bush cricket taxa and traits. Our results showed the importance of hedgerow quality for the ecology of bat and bush cricket communities and could be used to improve conservation management.