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81.
Juan José Pierella Karlusich Eric Pelletier Lucie Zinger Fabien Lombard Adriana Zingone Sébastien Colin Josep M. Gasol Richard G. Dorrell Nicolas Henry Eleonora Scalco Silvia G. Acinas Patrick Wincker Colomban de Vargas Chris Bowler 《Molecular ecology resources》2023,23(1):16-40
Phytoplankton account for >45% of global primary production, and have an enormous impact on aquatic food webs and on the entire Earth System. Their members are found among prokaryotes (cyanobacteria) and multiple eukaryotic lineages containing chloroplasts. Genetic surveys of phytoplankton communities generally consist of PCR amplification of bacterial (16S), nuclear (18S) and/or chloroplastic (16S) rRNA marker genes from DNA extracted from environmental samples. However, our appreciation of phytoplankton abundance or biomass is limited by PCR-amplification biases, rRNA gene copy number variations across taxa, and the fact that rRNA genes do not provide insights into metabolic traits such as photosynthesis. Here, we targeted the photosynthetic gene psbO from metagenomes to circumvent these limitations: the method is PCR-free, and the gene is universally and exclusively present in photosynthetic prokaryotes and eukaryotes, mainly in one copy per genome. We applied and validated this new strategy with the size-fractionated marine samples collected by Tara Oceans, and showed improved correlations with flow cytometry and microscopy than when based on rRNA genes. Furthermore, we revealed unexpected features of the ecology of these ecosystems, such as the high abundance of picocyanobacterial aggregates and symbionts in the ocean, and the decrease in relative abundance of phototrophs towards the larger size classes of marine dinoflagellates. To facilitate the incorporation of psbO in molecular-based surveys, we compiled a curated database of >18,000 unique sequences. Overall, psbO appears to be a promising new gene marker for molecular-based evaluations of entire phytoplankton communities. 相似文献
82.
Four experimental stream channels were used to study instantaneous downstream dispersal rates of young trout, Salmo trutta L., and salmon, S. salur L ., relative to four different water velocities.
Young salmon showed a high rate of dispersal at a low velocity of 7.5 cm s−1 and lower rates at higher velocities of 25 to 70cm s−1 . Trout showed their lowest rate at 25cm s−1 with a slightly higher rate at 7.5 cm s−1 and increasingly higher rates at velocities in excess of 25 cm s−1 . These results are consistent with field observations on the velocity preferences of young trout and salmon. 相似文献
Young salmon showed a high rate of dispersal at a low velocity of 7.5 cm s
83.
L. T. Colon R. C. Jansen D. J. Budding 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1995,90(5):691-698
Resistant genotypes of the diploid tuber-bearing South American species Solarium arnezii x hondelmannii, S. berthaultii, S. leptophyes and S. microdontum were crossed with three diploid genotypes of S. tuberosum that varied in resistance and maturity type. The progenies were field tested for 2 years for resistance to a complex race of Phytophthora infestans. A wealth of genetic variation for resistance was found in most of the progenies. At least two susceptibility groups could be distinguished in some progenies of S. microdontum. This could be explained by the presence of several major resistance genes in the wild parent and, unexpectedly, in the susceptible parent SH 82-44-111. In most of the wild parents and in the susceptible parent SH 77-114-2988 there appeared to be minor resistance genes. General combining ability effects were predominant; small specific combining ability effects were detected in some crosses of S. microdontum. Gene action appeared dominant in some crosses. 相似文献
84.
The Liphook Forest Fumigation Project: an overview 总被引:2,自引:1,他引:1
The aim of the Liphook Project was to assess the effects of SO2 and O3, singly and in combination, on coniferous forest ecosystems. More than 4000 trees of Scots pine (Pinus sylvestris), Norway spruce (Picea abies) and Sitka spruce (P. sitchensis) were fumigated for nearly 4 years using an open-air fumigation technique especially developed for the purpose. The technique eliminated artifacts due to chambers and enabled a variety of effects of the pollutant gases on forest ecosystems to be studied. Most symptoms of forest decline did not occur, but each species reacted in a different way to SO2 stress, providing no evidence for universal forest decline symptoms. However, some of the mechanisms hypothesized to underlie forest declines were observed as an effect of SO2 treatment, though others were not, notably any major effect of O3. The results are assessed against proposed regulatory standards (critical loads and levels) for the protection of forest ecosystems against pollution. 相似文献
85.
Julie Gordon Robert Rumpf Samuel L. Shank Dawne Vernon C. William Birky 《Journal of phycology》1995,31(2):312-313
The nuclear Rrn18 gene coding for small-subunit ribosomal RNA was amplified from Chlamydomonas humicola and C. dysosmos. The sequences were identical, in agreement with the combination of these two species under the name C. applanata on morphological and physiological grounds by Ettl and Schlösser (1992). 相似文献
86.
87.
Mayumi Shimizu Kazunari Inaba Toyokazu Yoshida Takayoshi Toda Akio Iwashima Toshio Mitsunaga 《Physiologia plantarum》1995,93(1):93-98
Three thiamine-binding proteins of 17-19 kDa (STBP-I, II, and III) were purified from sesame seed (Sesamum indicum L.). Each of the proteins was composed of two subunits of equal molecular mass and each subunit consisted of a large polypeptide and a small polypeptide linked by a disulfide bond(s). They were rich in glutamic acid (or glutamine) and arginine. Their binding activities were optimal at neutral pH. They bound specifically free thiamine but not thiamine phosphates. STBP-I had higher affinity for thiamine than STBP-II or STBP-III. STBP-II and STBP-III bound one molecule of thiamine per molecule, and STBP-I bound 0.5 molecule. The amino acid composition and structure of the STPBs were similar to those of 2S storage proteins. 相似文献
88.
Thermoluminescence experiments have been carried out to study the effect of a transmembrane proton gradient on the recombination properties of the S2 and S3 states of the oxygen evolving complex with QA
- and QB
-, the reduced electron acceptors of Photosystem II. We first determined the properties of the S2QA
- (Q band), S2QB
- and S3QB
- (B bands) recombinations in the pH range 5.5 to 9.0, using uncoupled thylakoids. The, a proton gradient was created in the dark, using the ATP-hydrolase function of ATPases, in coupled unfrozen thylakoids. A shift towards low temperature of both Q and B bands was observed to increase with the magnitude of the proton gradient measured by the fluorescence quenching of 9-aminoacridine. This downshift was larger for S3QB
- than for S2QB
- and it was suppressed by nigericin, but not by valinomycin. Similar results were obtained when a proton gradient was formed by photosystem I photochemistry. When Photosystem II electron transfer was induced by a flash sequence, the reduction of the plastoquinone pool also contributed to the downshift in the absence of an electron acceptor. In leaves submitted to a flash sequence above 0°C, a downshift was also observed, which was supressed by nigericin infiltration. Thus, thermoluminescence provides direct evidence on the enhancing effect of lumen acidification on the S3S2 and S2S1 reverse-transitions. Both reduction of the plastoquinone pool and lumen acidification induce a shift of the Q and B bands to lower temperature, with a predominance of lumen acidification in non-freezing, moderate light conditions.Abbreviations 9-AA
9-aminoacridine
- EA
activation energy
- F0
constant fluorescence level
- FM
maximum fluorescence, when all PS-II centers are closed
- FV
variable fluorescence (FM–F0)
- PS I, PS II
Photosystem I, photosystem II
- PQ
plastoquinone
- TL
thermoluminescence 相似文献
89.
We argue that the Würm III glaciation eradicated possible European populations ofS. torvicornis, and that today, a reconquest of Europe takes place on two fronts.A western wave has reached the Pyrenees, an eastern one now occupies most of eastern and northern Europe. The western route probably started in the Maghreb, the eastern one in the Levant and the Ponto-Caspian. Animals in the west had to move north by crossing, at right angles, a series of east-west oriented river valleys and progressed slowly; animals in the east could move up river valleys extending north-east, and moved quickly. Italy was not occupied, becauseS.torvicornis is a warm stenotherm, and by the time the climate had warmed sufficiently for it to reach the southern shore of the mediterranean (ca 6000 BP), the gap with Italy was probably too large for a crossing. Cold-loving species (of the generaBranchipus, Chirocephalus) conversely, and could freely flow across the Central Mediterranean at low sea-levels (ca 12000 BP), and now occur in Italy (and the rest of Europe) as well as in Northern Africa.A prediction of our hypothesis is that the pioneer populations in Spain and Central Europe should have been isolated longest. Thisis tested and confirmed by their comparative morphology, and two subspecies,S. t. torvicornis andS. t. bucheti are reinstated.A gap across the Nile Valley where onlyS. rubricaudatus seems to occur, deserves further study. 相似文献
90.
D. J. Wolters C. Van Dijk E. G. Zoetendal & A. D. L. Akkermans 《Molecular ecology》1997,6(10):971-981
Ineffective Frankia endophytes were retrieved from various wet soils by using Alnus glutinosa clones as trapping plants. No pure cultures could be isolated from these ineffective nodules. Therefore, the phylogenetic position of these endophytes was determined by sequence analysis of cloned PCR products of bacterial 16S rDNA, derived from nodules. The results showed that all nodule endophytes belong to a hitherto undescribed cluster of the Frankia phylogenetic tree. The position of these uncultured ineffective Frankia nodule endophytes is different from that of the ineffective Frankia isolates derived from A. glutinosa nodules, even when originating from the same geographical location. This suggests a bias in current isolation techniques. 相似文献