Capture-recapture studies using radio telemetry with premature radio-tag failure

Radio tags, because of their high detectability, are often used in capture-recapture studies. A key assumption is that radio tags do not cease functioning during the study. Radio-tag failure before the end of a study can lead to underestimates of survival rates. We develop a model to incorporate secondary radio-tag failure data. This model was applied to chinook smolts (Oncorhynchus tshawytscha) on the Columbia River, Washington. Estimates of fish survival from this model were much larger than those from the standard Cormack-Jolly-Seber analysis.     

Chromosome Transfer from Pink Salmon (Oncorhynchus gorbuscha) to Masu Salmon (O. masou)

Sperms from Pink salmon were subjected to incomplete irradiation by γ-ray to cause partial breakageof their chromosome. Normal eggs from masu salmon were fertilized by these damaged sperms andput under hydrostatic pressure to suppress the release of second polar bodies. The resultant eggscontained complete sets of genome from masu salmon and some chromosomes and chromosomefragments from pink salmon. Karyotype and isozyme of the embryos were analyzed. The resultsdemonstrate that the chromosomes from pink salmon showed genetic activities. Variations in hatchedindividuals were observed.     

Somatosensory evoked potentials in the telencephalon of Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis>) following galvanic stimulation of the tail

Electric activity in the brain which is time-locked to a given stimulation of the somatosensory system can be recorded as a somatosensory evoked potential (SEP). We investigated whether a galvanic stimulation of the tail base in Atlantic salmon (Salmo salar) would elicit a SEP in the telencephalon. The telencephalon is central in learning and memory, and activity here may be a prerequisite for processing of external stimuli on a cognitive or emotional level. Anaesthetized salmon (n = 11) were subjected to craniotomy and a recording electrode was inserted into the telencephalon. The fish were given stimulations of four intensities, i.e., 2, 5, 10 and 20 mA. A SEP was elicited in the contralateral dorsal telencephalon for all intensities. This result agrees with findings in other fish species. Furthermore, there was a significant difference between the maximum peak amplitude and mean amplitude of the SEP elicited by putative non-noxious (2 mA) and putative noxious (20 mA) stimulation intensities (P < 0.01). The stronger stimulation intensities also tend to introduce longer-latencies components in the SEP. The results added to the body of literature indicates that the exteroceptive senses are represented by processing within the telencephalon of the fish.     

Forensic identification of endangered Chinook Salmon (Oncorhynchus tshawytscha) using a multilocus SNP assay

Upper Columbia River spring-run Chinook salmon are listed as endangered under the Endangered Species Act (ESA). Forensic genetic analyses are needed to assist the National Oceanic and Atmospheric Administration Fisheries Office of Law Enforcement (NOAA Fisheries OLE) during criminal investigations of ESA take violations. Previous genetic studies using allozyme markers have demonstrated that the spring-run and summer-run of Chinook salmon in the Upper Columbia River are genetically differentiated. Because many of the carcasses collected as forensic evidence are of compromised quality, we have developed a PCR based assay to distinguish between the spring-run and the summer-run Chinook salmon in the upper Columbia River Basin. A total of 347 Chinook salmon samples from the upper Columbia River in Washington State were surveyed for single nucleotide polymorphisms (SNPs) using PCR-RFLP at two nuclear genetic loci (Somatolactin and Cytochrome p450A), and a mitochondrial locus (Cytochrome Oxidase III/ND3). We found near fixed differences in our SNP baseline between the summer-run and the spring-run Chinook salmon in the upper Columbia River at these loci enabling us to assign individuals to the most likely population of origin with a high degree of accuracy.     

Spatial overlap of shark nursery areas and the salmon farming industry influences the trophic ecology of Squalus acanthias on the southern coast of Chile

Potential interactions between marine predators and humans arise in the southern coast of Chile where predator feeding and reproduction sites overlap with fisheries and aquaculture. Here, we assess the potential effects of intensive salmon aquaculture on food habits, growth, and reproduction of a common predator, the spiny dogfish—identified as Squalus acanthias via genetic barcoding. A total of 102 (89 females and 13 males) individuals were collected during winter and summer of 2013–2014 from the Chiloé Sea where salmon aquaculture activities are concentrated. The low frequency of males in our study suggests spatial segregation of sex, while immature and mature females spatially overlapped in both seasons. Female spiny dogfish showed a functional specialist behavior as indicated by the small number of prey items and the relative high importance of the austral hake and salmon pellets in the diet. Immature sharks fed more on pellets and anchovies than the larger hake‐preferring mature females. Our results also indicate that spiny dogfish switch prey (anchovy to hake) to take advantage of seasonal changes in prey availability. Despite differences in the trophic patterns of S. acanthias due to the spatial association with intensive salmon farming, in this region, there appears to be no difference in fecundity or size at maturity compared to other populations. Although no demographic effects were detected, we suggest that a range of additional factors should be considered before concluding that intensive aquaculture does not have any impact on these marine predators.     

Evolution of CC chemokines in teleost fish: a case study in gene duplication and implications for immune diversity

Chemokines are a superfamily of cytokines responsible for regulating cell migration under both inflammatory and physiological conditions. CC chemokines are the largest subfamily of chemokines, with 28 members in humans. A subject of intense study in mammalian species, the known functional roles of CC chemokines ligands in both developmental and disease conditions continue to expand. They are also an important family for the study of gene copy number variation and tandem duplication in mammalian species. However, little is known regarding the evolutionary origin and status of these ligands in primitive vertebrates such as teleost fish. In this paper, we review the evolution of the teleost fish CC chemokine gene family, noting evidence of widespread tandem gene duplications and examining the implications of this phenomenon on immune diversity. Through extensive phylogenetic analysis of the CC chemokine sets of four teleost species, zebrafish, catfish, rainbow trout, and Atlantic salmon, we identified seven large groups of CC chemokines. It appeared that several major groups of CC chemokines are highly related including the CCL19/21/25 group, the CCL20 group, CCL27/28 group, and the fish-specific group. In the three remaining groups that contained the largest number of members, the CCL17/22 group, the MIP group, and the MCP group, similarities among species members were obscured by rapid, tandem duplications that may contribute to immune diversity.     

Response of downstream migrant juvenile Pacific salmonids to accelerating flow and overhead cover

Mechanical structures designed to divert or guide juvenile migrant salmon at dams often work less effectively than expected. This likely results from a lack of understanding of fish behaviour. In order to address this, a series of experiments was conducted at McNary dam, USA, to assess the influence of hydraulic transition and overhead cover on the behaviour of seaward migrating juvenile Pacific salmon. Fish passing through a flume encountered a choice of route that varied based on hydraulic factors and overhead cover. Direct observation revealed that individuals elicited strong avoidance behaviour when they encountered areas where hydraulic conditions changed rapidly or were covered. Our findings have implications relevant to fish pass design and culvert restoration in Europe. Critically, improvement of current fish pass design and development of alternative mechanisms that effectively block fish access to, and divert fish away from poor passage routes, requires consideration of the behavioural component of fish migration. Guest editors: R. L. Welcomme & G. Marmulla Hydropower, Flood Control and Water Abstraction: Implications for Fish and Fisheries     

Comparative survey of within-river genetic structure in Atlantic salmon; relevance for management and conservation

In wild populations, defining the spatial scale at which management and conservation practices should focus remains challenging. In Atlantic salmon, compelling evidence suggests that genetic structure within rivers occurs, casting doubt on the underlying premise of the river-based management approach for this species. However, no comparisons of within-river genetic structure across different systems have been performed yet to assess the generality of this pattern. We compared the within-river genetic structure of four important salmon rivers in North America and evaluated the extent of genetic differentiation among their main tributaries. We found a hierarchical genetic structure at the river and tributary levels in most water systems, except in the Miramichi where panmixia could not be rejected. In the other cases, genetic differentiation between most tributaries was significant and could be as high as that found between rivers of the same geographical region. More importantly, the extent of genetic differentiation between tributaries varied greatly among water systems, from well differentiated (θ_ST = 0.035) to undifferentiated (θ_ST = −0.0003), underlying the difficulty in generalizing the ubiquity of within-river genetic structure in Atlantic salmon. Thus, this study underlines the importance of evaluating the genetic structure of Atlantic salmon in large water systems on a case by case basis in order to define the most appropriate spatial scale and focal unit for efficient management and conservation actions. The potential consequences of management at an inappropriate spatial scale are discussed.