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81.
Atriplex nummularia is a polyploid Australian saltbush which has been identified as a suitable species for use in the rehabilitation of agricultural land affected by salinity. We isolated 12 polymorphic loci for a preliminary assessment of genetic variability and structure within the species as a basis for a breeding programme. Preliminary screening of loci in 40 individuals from two populations revealed multibanded genotypes consisting of up to seven alleles in a single individual, with up to 29 alleles observed at a single locus. The multibanded patterns are consistent with the polyploid status of this species. 相似文献
82.
Ten microsatellite loci were isolated and characterized for Callicarpa subpubescens (Verbenaceae), an endemic tree species of the Bonin Islands. The observed number of alleles at each locus ranged from two to eight with an average of 4.9, and the expected heterozygosity ranged from 0.238 to 0.690 with an average of 0.483. All 10 loci were screened in cross-amplification tests for two other endemic Callicarpa species that also inhabit the Bonin Islands. All loci were successfully amplified in these species. 相似文献
83.
Crawford NG Zaldívar-Rae J Hagen C Schable A Rosenblum EB Graves JA Reeder TW Ritchie MG Glenn TC 《Molecular ecology resources》2008,8(1):219-223
We describe polymerase chain reaction primers and amplification conditions for 13 microsatellite DNA loci isolated from two bisexual species of whiptail lizards Aspidoscelis costata huico and Aspidoscelis inornata. Primers were tested on either 16 or 48 individuals of A. c. huico and/or 26 individuals of A. inornata. Ten of the 13 primers were also tested against a panel of 31 additional whiptail taxa. We detected three to nine alleles per locus in A. c. huico and four to 19 alleles per locus in A. inornata, with observed heterozygosity ranging from 0.60 to 0.87 and from 0.15 to 1.00, respectively. These primers will be an important resource for surveys of genetic variation in these lizards. 相似文献
84.
Pereira MF Bandeira LF Blanco AJ Ciampi AY Coelho AS 《Molecular ecology resources》2008,8(6):1329-1331
Annona crassiflora Mart. (Annonaceae) is a native fruit species of the region of Brazilian Cerrado with a high agronomic potential, although without any traces of domestication. A set of 10 microsatellite primer pairs was developed from an enriched genome library (TC13). An average of 19.3 alleles per locus was detected. Observed heterozygosity estimates were consistently lower than those obtained for gene diversity, evidencing a departure from Hardy-Weinberg expected proportions. The reported set of markers showed to be highly informative and constitutes a powerful tool for the development of genetic characterization studies in A. crassiflora. 相似文献
85.
We have developed eight high-quality microsatellite DNA loci for the saltmarsh sharp-tailed sparrow and one additional locus with evidence of null alleles. In a sample of 250-350 individuals, the average number of alleles per locus was 14.7 and average observed heterozygosity was 0.80. These loci were tested in three additional species of emberizid sparrows, indicating that more than half of the loci could be useful in other sparrows. 相似文献
86.
Vijeshwar Verma Andrija Smelcerovic Sebastian Zuehlke Mir Abid Hussain Syed Mudasir Ahmad Thorsten Ziebach Ghulam Nabi Qazi Michael Spiteller 《Biochemical Systematics and Ecology》2008
The content of hypericins (hypericin and pseudohypericin), hyperforin, and flavonoids (rutin, hyperoside, quercitrin, and quercetin) and genetic profiles of eight accessions of Hypericum perforatum L., collected from different locations in India, have been determined. The secondary metabolite content was determined using a highly selective LC/MS/MS method. Pearson and Spearman's correlation coefficient were used to investigate the relationships between the secondary metabolites and a significant positive correlation was found between hypericin and pseudohypericin contents. Genetic profiling was undertaken using the random amplification of polymorphic DNA (RAPD) and single sequence repeat (SSR) methods. Among the 49 random primers used for the initial screening, only nine yielded polymorphic RAPD profiles. The SSR analysis shows that seven out of the 11 primers were polymorphic. There exists only a partial correlation between the chemical content and genetic profiling data among the accessions under study. 相似文献
87.
88.
M. Pandey O. Gailing D. Fischer H. H. Hattemer R. Finkeldey 《Molecular ecology resources》2004,4(2):253-255
Sycamore (Acer pseudoplatanus L.) is a tetraploid European hardwood tree species. The reproduction system of the insect‐pollinated trees and patterns of genetic variation are largely unknown. We isolated and characterized eight polymorphic microsatellite markers for Acer pseudoplatanus L. The high degree of polymorphism observed at these markers makes them useful to observe genetic variation patterns at various spatial scales and to analyse gene flow and the mating system. Primers developed for the amplification of microsatellites in A. pseudoplatanus were tested for 21 different species of genus Acer. Amplification products of the expected size were obtained in most cases. 相似文献
89.
中国李简单重复序列(SSR)反应体系的建立 总被引:21,自引:1,他引:20
探讨中国李品种美丽李(Prunus salicina‘Beauty')简单重复序列(simple sequence repeat,SSR)反应体系中5种主要成分浓度对反应产物的影响.结果表明,引物对中国李有通用性,25μLSSR反应体系中,TaqDNA酶、Mg2 、每个引物、模板DNA和dNTPs等5种成分的适宜浓度分别是:1.5 U、2.0 mmol·L-1、0.8μmol·L-1、30~40 ng和0.16~0.24 mmol·L-1. 相似文献
90.
Ranjana Bhattacharjee Maria Kolesnikova-Allen Peter Aikpokpodion Sunday Taiwo Ivan Ingelbrecht 《Plant Molecular Biology Reporter》2004,22(4):435-436
DNA extraction is a time-consuming and expensive component of molecular marker analysis, constituting about 30–60% of the
total time required for sample processing. Furthermore, the procedure for extracting high-quality DNA from tree species such
as cocoa differs from extraction protocols suitable for other crop plants. This is accompanied by problems in collecting leaf
tissues from field-grown cocoa trees, where storage facilities are not available and where transporting samples to laboratory
for immediate refrigeration is usually impossible. We preserved cocoa leaf tissues in the field in an NaCl-CTAB-azide solution
(as described in Rogstad, 1992), which did not require immediate refrigeration. This method also allowed preservation of leaf
tissues for a few days during transportation and protected leaf tissues from bacterial and fungal attacks. Once transported
to the laboratory, the samples were stored at 4°C for almost 1 y. To isolate good-quality DNA from stored leaf tissues, a
rapid semiautomated and relatively high-throughput protocol was established. The procedure followed a modified CTAB/β-mercaptoethanol
method of DNA extraction in a 96-well plate, and an automated system (i.e., GenoGrinder 2000) was used to grind the leaf tissues.
The quality of DNA was not affected by long storage, and the quantity obtained per sample was adequate for about 1000 PCR
reactions. Thus, this method allowed isolation of about 200 samples per day at a cost of $0.60 per sample and is a relatively
high-throughput, low-cost extraction compared with conventional methods that use manual grinding and/or expensive kits. 相似文献