Four members of the Sox gene family in channel catfish

The homologous sequences of human or mouse SOX1, SOX4 and SOX11 , and one novel Sox gene (named Ccf-SoxN ) were identified in the genome of channel catfish Ictalurus punctatus . Identification of these genes is a potential step in understanding development regulations including sex determination in channel catfish.     

氮添加对湿地松林土壤水解酶和氧化酶活性的影响

通过3个水平野外氮添加控制试验(0、40、120 kg N·hm^-2·a^-1),研究氮添加对亚热带湿地松林土壤水解酶和氧化酶活性的影响.结果表明: 氮添加显著抑制了土壤有机质中碳、氮、磷水解酶和氧化酶的活性,导致β-1,4-葡糖苷酶(BG)、纤维素二糖水解酶(CBH)、β-1,4-乙酰基-葡糖胺糖苷酶(NAG)、过氧化物酶(PER)活性下降16.5%～51.1%,并且高水平氮添加对酶活性抑制效果更明显;氮添加导致α-1,4-葡糖苷酶(aG)、β-1,4-木糖苷酶(BX)、酸性磷酸酶(AP)、多酚氧化酶(PPO)活性降低14.5%～38.6%,不同水平氮添加处理间差异不显著.土壤酶活性存在明显的季节性差异,BG、NAG、BX、CBH、AP、PPO活性表现为3月>6月>10月,aG、PER活性表现为10月>3月>6月.多数土壤水解酶和氧化酶与pH呈显著正相关,与NO₃^--N含量呈显著负相关,表明氮添加导致pH降低和土壤中硝化作用增强,抑制了土壤水解酶和氧化酶活性.氮添加不利于亚热带土壤有机质的矿化和周转,并且随着氮添加量的增加,效果更明显.     

The chalcone synthase multigene family of Petunia hybrida (V30): sequence homology,chromosomal localization and evolutionary aspects

Chalcone synthase (CHS) genes in Petunia hybrida comprise a multigene family containing at least 7 complete members in the strain Violet 30 (V30). Based on a high sequence homology in both coding and non-coding sequence, a number of CHS genes can be placed into two subfamilies. By restriction fragment length polymorphism (RFLP) analysis it was shown that both chromosomes II and V carry one of these subfamilies, in addition to the other CHS genes identified so far. Members of a subfamily were found to be closely linked genetically. Analysis of the Petunia species that contributed to the hybrid nature of P. hybrida (P. axillaris, P. parodii, P. inflata and P. violacea) shows that none of the CHS gene clusters is specific for either one of the parents and therefore did not arise as a consequence of the hybridization. The number of CHS genes within a subfamily varies considerably among these Petunia species. From this we infer that the CHS subfamilies arose from very recent gene duplications.     

Cyphastrea kausti sp. n. (Cnidaria,Anthozoa, Scleractinia), a new species of reef coral from the Red Sea

A new scleractinian coral species, Cyphastrea kausti sp. n., is described from 13 specimens from the Red Sea. It is characterised by the presence of eight primary septa, unlike the other species of the genus, which have six, ten or 12 primary septa. The new species has morphological affinities with Cyphastrea microphthalma, from which it can be distinguished by the lower number of septa (on average eight instead of ten), and smaller calices and corallites. This species was observed in the northern and central Red Sea and appears to be absent from the southern Red Sea.     

昆虫几丁质酶基因家族功能研究进展

昆虫几丁质酶的研究历史很长,研究内容也非常广泛;但仅局限于传统的方法研究某个昆虫单个基因的功能及应用。近年来,随着生物信息学和RNAi技术在生命科学研究工作中的广泛应用,在昆虫几丁质酶的研究方面也取得了较大进展。本文主要以生物信息学在几丁质酶家族基因鉴定和分类研究过程中的应用,以及利用RNAi技术分析几丁质酶不同家族成员在赤拟谷盗和褐飞虱两种昆虫生长发育中的功能比较分析,对全面认识昆虫几丁质酶基因家族功能和作用机理,并利用几丁质酶基因防治害虫奠定良好的基础。     

基于亲权鉴定的千岛湖社鼠家群遗传结构与亲缘关系特征研究

于2009年7月至2010年11月,对浙江千岛湖两个岛屿上的社鼠(Niviventer confucianus)种群进行标志重捕,并采用8个高多态性的微卫星位点,对两个岛屿的社鼠种群进行家群分析和亲权鉴定,探讨了社鼠家群的亲缘关系特征。结果显示,8个微卫星位点能可靠地对两个岛屿社鼠种群进行亲权鉴定,A岛已确定亲缘关系的71只社鼠分为12个家群,家群中的个体数最多达到19个,B岛已确定的49只社鼠个体共分为11个家群,家群中的个体数最多达到14个。家群内部成员之间的亲缘关系表现为配对繁殖的个体对间亲缘系数最小,揭示了社鼠倾向于选择亲缘关系较远的异性作为配偶。家群中雄性后代个体之间与雌性个体之间的亲缘关系相比,两岛表现情况相反,该结果暗示两岛屿上社鼠扩散行为可能有所不同。通过计算与同一雄性(或同一雌性)交配的个体间的亲缘系数,发现两个岛屿上的社鼠在与不同异性交配时也存在选择性,即避免选择亲缘关系较近的异性作为混交的对象。     

An inducible lactone hydrolase yielding 2,5-diphenyl-3-hydroxy-4-oxo-2-hexendioic acid from pulvinic acid

The metabolism of vulpinic acid by an unclassified soil micro-organism was studied. A new compound, 2,5-diphenyl-3-hydroxy-4-oxo-2-hexendioic acid (DHOHA) was isolated from the reaction mixture of a cell-free preparation and pulvinic acid. The existence of a hydrolase which catalyses the conversion of vulpinic acid to pulvinic acid was detected in cell-free preparation, and an inducible lactone hydrolase capable of converting pulvinic acid to DHOHA was purified 130-fold and characterized. This enzyme had a MW of ca 34 000, a K_m for pulvinic acid at pH optimum (pH 7.0) less than 10 ^{? 6} M, pI = 5.0, and was inhibited by p-chloromercuriphenylsulfonate and diethylpyrocarbonate. The enzyme was highly specific for pulvinic acid. The initial degradative steps proposed for this organism are vulpinic acid → pulvinic acid → DHOHA.     

Cloning and Molecular Modeling of Duodenase with Respect to Evolution of Substrate Specificity within Mammalian Serine Proteases That Have Lost a Conserved Active-Site Disulfide Bond

Mammalian serine proteases such as the chromosome 14 (Homo sapiens, Mus musculus) located granzymes, chymases, cathepsin G, and related enzymes including duodenase collectively represent a special group within the chymotrypsin family which we refer to here as "granases". Enzymes of this group have lost the ancient active-site disulfide bond Cys191-Cys220 (bovine chymotrypsinogen A numbering) which is strongly conserved in classic serine proteases such as pancreatic, blood coagulation, and fibrinolysis proteases and others (granzymes A, M, K and leukocyte elastases). We sequenced the cDNA encoding bovine (Bos taurus) duodenase, a granase with unusual dual trypsin-like and chymotrypsin-like specificity. The sequence revealed a 17-residue signal peptide and two-residue (GlyLys) activation peptide typical for granases. Production of the mature enzyme is apparently accompanied by further proteolytic processing of the C-terminal pentapeptide extension of duodenase. Similar C-terminal processing is known for another dual-specific granase, human cathepsin G. Using phylogenetic analysis based on 39 granases we retraced the evolution of residues 189 and 226 crucial for serine protease primary specificity. The analysis revealed that while there is no obvious link between mutability of residue 189 and the appearance of novel catalytic properties in granases, the mutability of residue 226 evidently gives rise to different specificity subgroups within this enzyme group. The architecture of the extended substrate-binding site of granases and structural basis of duodenase dual specificity based on molecular dynamic method are discussed. We conclude that the marked selectivity of granases that is crucial to their role as regulatory proteases has evolved through the fine-tuning of specificity at three levels--primary, secondary, and conformational.