Stabilization of G-quadruplex structure on vascular endothelial growth factor gene promoter depends on CpG methylation site and cation type

Background

DNA methylation at the 5-position of cytosine is an epigenetic modification of CpG dinucleotides. In addition to CpG methylation, the G-quadruplex (G4) structure has been reported as a regulator of gene expression. The identification of G4 forming sequences in CpG islands suggests an involvement of CpG-methylated G4 structures in biological processes; however, few reports have addressed the effects of CpG methylation on G4 structure.

The periodically forced Droop model for phytoplankton growth in a chemostat

 It is proved that the periodically forced Droop model for phytoplankton growth in a chemostat has precisely two dynamic regimes depending on a threshold condition involving the dilution rate. If the dilution rate is such that the sub-threshold condition holds, the phytoplankton population is washed out of the chemostat. If the super-threshold condition holds, then there is a unique periodic solution, having the same period as the forcing, characterized by the presence of the phytoplankton population, to which all solutions approach asymptotically. Furthermore, this result holds for a general class of models with monotone growth rate and monotone uptake rate, the latter possibly depending on the cell quota. Received 10 October 1995; received in revised form 26 March 1996     

QUANTITATIVE GENETIC VARIANCE MAINTAINED BY FLUCTUATING SELECTION WITH OVERLAPPING GENERATIONS: VARIANCE COMPONENTS AND COVARIANCES

The quantitative genetic variance-covariance that can be maintained in a random environment is studied, assuming overlapping generations and Gaussian stabilizing selection with a fluctuating optimum. The phenotype of an individual is assumed to be determined by additive contributions from each locus on paternal and maternal gametes (i.e., no epistasis and no dominance). Recurrent mutation is ignored, but linkage between loci is arbitrary. The genotype distribution in the evolutionarily stable population is generically discrete: only a finite number of polymorphic alleles with distinctly different effects are maintained, even though we allow a continuum of alleles with arbitrary phenotypic contributions to invade. Fluctuating selection maintains nonzero genetic variance in the evolutionarily stable population if the environmental heterogeneity is larger than a certain threshold. Explicit asymptotic expressions for the standing variance-covariance components are derived for the population near the threshold, or for large generational overlap, as a function of environmental variability and genetic parameters (i.e., number of loci, recombination rate, etc.), using the fact that the genotype distribution is discrete. Above the threshold, the population maintains considerable genetic variance in the form of positive linkage disequilibrium and positive gamete covariance (Hardy-Weinberg disequilibrium) as well as allelic variance. The relative proportion of these disequilibrium variances in the total genetic variance increases with the environmental variability.     

Purification, characterization and stability of barley grain peroxidase BP 1, a new type of plant peroxidase

The major peroxidase of barley grain (BP 1) has enzymatic and spectroscopic properties that are very differeant from those of other known plant peroxidases (EC 1.11.1.7) and can therefore contribute to the understanding of the many physiological functions ascribed to these enzymes. To study the structure-function relationships of this unique model peroxidase, large-scale and Jaboratory-scale purifications have been developed. The two batches of pure BP 1 obtained were identical in their enzymatic and spectral properties, and confirmed that BP 1 is different from the prototypical horseradish peroxidase isoenzyme C (HRP C). However, when measuring the specific activity of BP 1 at pH 4.0 in the presence of 1 m M C_aCl₂, the enzyme was as competent as HRP C at neutral pH towards a variety of substrates (m M mg⁻¹ min⁻¹): coniferyl alcohol (930±48), caffeic acid (795±53), ABTS (2,2'-azino-di-[3-ethyl-benzothiazoline-(6)-sulfonic acid]) (840±47), ferulic acid (415±20), p -coumaric acid (325±12), and guaiacol (58±3). The absorption spectrum of BP 1 is blue-shifted compared to that of HRP C with a Soret maximum of 399–402 nm, depending on pH. The prosthetic group was shown to be iron-protoporphyrin IX, which is characteristic of plant peroxidases. BP 1 is stable from pH 3 to 11, indicating that its unusual spectral characteristics do not result from enzyme instability. The thermostability is also normal with a melting temperature of 75°C at pH 6.6, and 67°C at pH 4.0 and 8.3. It is clear that the unusual properties of BP 1 are genuine, and reflect a novel regulation of plant peroxidase function.     

Interactions between water stress, sun-shade acclimation, heat tolerance and photoinhibition in the sclerophyll Heteromeles arbutifolia

Gas exchange and chlorophyll fluorescence techniques were used to evaluate the acclimation capacity of the schlerophyll shrub Heteromeles arbutifolia M. Roem. to the multiple co-occurring summer stresses of the California chaparral. We examined the influence of water, heat and high light stresses on the carbon gain and survival of sun and shade seedlings via a factorial experiment involving a slow drying cycle applied to plants grown outdoors during the summer. The photochemical efficiency of PSII exhibited a diurnal, transient decrease (δF/F_m′) and a chronic decrease or photoinhibition (F_v/F_m) in plants exposed to full sunlight. Water stress enhanced both transient decreases of δF/F_m’and photoinhibition. Effects of decreased δF/F_m’and F_v/F_m on carbon gain were observed only in well-watered plants since in water-stressed plants they were overidden by stomatal closure. Reductions in photochemical efficiency and stomatal conductance were observed in all plants exposed to full sunlight, even in those that were well-watered. This suggested that H. arbutifolia sacrificed carbon gain for water conservation and photoprotection (both structurally via shoot architecture and physiologically via down-regulation) and that this response was triggered by a hot and dry atmosphere together with high PFD, before severe water, heat or high PFD stresses occur. We found fast adaptive adjustments of the thermal stability of PSII (diurnal changes) and a superimposed long-term acclimation (days to weeks) to high leaf temperatures. Water stress enhanced resistance of PSII to high temperatures both in the dark and over a wide range of PFD. Low PFD protected photochemical activity against inactivation by heat while high PFD exacerbated damage of PSII by heat. The greater interception of radiation by horizontally restrained leaves relative to the steep leaves of sun-acclimated plants caused photoinhibition and increased leaf temperature. When transpirational cooling was decreased by water stress, leaf temperature surpassed the limits of chloroplast thermostability. The remarkable acclimation of water-stressed plants to high leaf temperatures proved insufficient for the semi-natural environmental conditions of the experiment. Summer stresses characteristic of Mediterranean-type climates (high leaf temperatures in particular) are a potential limiting factor for seedling survival in H. arbutifolia, especially for shade seedlings lacking the crucial structural photoprotection provided by steep leaf angles.     

Quantitative analysis of CryIA(b) expression in Bt maize plants,tissues, and silage and stability of expression over successive generations

The range and stability of expression of the transgenic CryIA(b) protein was examined in Ciba Seeds Bt maize plants derived from Event 176. Specifically, CryIA(b) levels were determined for: (1) various plant tissues and developmental stages in three maize lines from 1993 field tests; (2) pollen and leaves from plants representing four backcross generations of two genotypes; (3) leaves of 6 precommercial hybrids; and (4) silage from one Bt maize hybrid. Significant levels were found only in pollen and leaves. Genetic background did not greatly impact the level seen in either tissue. CryIA(b) expression in maize plants derived from transformation Event 176 was stable over at least four successive generations. On a per acre basis, the highest amount of CryIA(b) protein (estimated to be 2-4 g CryIA(b) protein/acre) was found to occur at anthesis, consistent with the stage at which maximum plant vegetative biomass is reached. CryIA(b) was not detected in silage prepared from CryIA(b)-expression plants. The maize-expressed CryIA(b) protein was found to have the expected size and to be immunoreactive with antibodies prepared against crystals from Bacillus thuringiensis subsp. kurstaki.     

一类生化反应模型的定性分析

本文讨论了Babloyantz-Hiernaux生化反应模型及其特殊情况下的Glerer-Meinhardt数学模型,得到了前者的平衡位置的局部稳定位和后者的极限环的存在性即振荡反应的存在性以及其平衡位置的大范围稳定性.     

非线性接触率和种群动力学对SI传染病模型的影响

本文研究了具有一般非线性接触率和易感类中具有Logistic增长的SI传染病模型的正不变集、平衡位置以及平衡位置的稳定性．     

浙江省商品粮基地县粮食生产力的评价与分析

利用系统聚类法和稳定性测度的Finlay和Wilkinson模型分析了浙江21个商品粮基地县的粮食生产力水平及其稳定性．结果表明：21个县（市）的粮食生产力水平可以分成4类,而绍兴与海盐为生产力最高的一类,同时绍兴县的生产力稳定性高于平均稳定性．生产力的年度稳定性之间存在显著差异,其中1984年与1985年的生产力稳定性分别显著与极显著地高于平均稳定性,而1988年的稳定性却显著地低于平均稳定性;然而,生产力的地区稳定性之间却无显著差异．本文还依据分析结果就维持生产力稳定性问题提出了建议.