从美国 FDA 审评角度探讨新药研发的风险控制

众所周知,新药研发是一个漫长而艰难的过程,投入大,但成功率低。从项目的选择、分子结构最优化、靶点的选择、体外实 验结果与体内反应的一致性、药物安全性、临床试验设计优化以及对新药研发相关法规的理解、与监管部门的有效沟通等诸方面,探讨 对新药研发风险的把控。     

Simulations inform design of regional occupancy‐based monitoring for a sparsely distributed,territorial species

Sparsely distributed species attract conservation concern, but insufficient information on population trends challenges conservation and funding prioritization. Occupancy‐based monitoring is attractive for these species, but appropriate sampling design and inference depend on particulars of the study system. We employed spatially explicit simulations to identify minimum levels of sampling effort for a regional occupancy monitoring study design, using white‐headed woodpeckers (Picoides albolvartus), a sparsely distributed, territorial species threatened by habitat decline and degradation, as a case study. We compared the original design with commonly proposed alternatives with varying targets of inference (i.e., species range, space use, or abundance) and spatial extent of sampling. Sampling effort needed to achieve adequate power to observe a long‐term population trend (≥80% chance to observe a 2% yearly decline over 20 years) with the previously used study design consisted of annually monitoring ≥120 transects using a single‐survey approach or ≥90 transects surveyed twice per year using a repeat‐survey approach. Designs that shifted inference toward finer‐resolution trends in abundance and extended the spatial extent of sampling by shortening transects, employing a single‐survey approach to monitoring, and incorporating a panel design (33% of units surveyed per year) improved power and reduced error in estimating abundance trends. In contrast, efforts to monitor coarse‐scale trends in species range or space use with repeat surveys provided extremely limited statistical power. Synthesis and applications. Sampling resolutions that approximate home range size, spatially extensive sampling, and designs that target inference of abundance trends rather than range dynamics are probably best suited and most feasible for broad‐scale occupancy‐based monitoring of sparsely distributed territorial animal species.     

嗜酸乳杆菌活菌制剂保护剂及其工艺的研究

为提高嗜酸乳杆菌片剂的活菌存活率,延长其有效期,在制备过程中添加两组保护剂并对其配方进行了优化.首先利用数学统计方法Plackett-Burman设计,对扩大培养时加入的8种材料及制剂压片时的12种材料的保护效果进行评价,分别筛选出影响嗜酸乳杆菌存活率的重要因素;接着用均匀设计法进一步得到这些重要因素的最适百分比.验证试验表明:扩大培养时加入氯化钠0.3％、甘露醇0.4％、麦芽糖3.5％有显著保护作用;制剂压片时加入抗坏血酸1.0％、蔗糖35.0％有显著保护作用.     

Ab initio prediction of the three-dimensional structure of a de novo designed protein: a double-blind case study

Ab initio structure prediction and de novo protein design are two problems at the forefront of research in the fields of structural biology and chemistry. The goal of ab initio structure prediction of proteins is to correctly characterize the 3D structure of a protein using only the amino acid sequence as input. De novo protein design involves the production of novel protein sequences that adopt a desired fold. In this work, the results of a double-blind study are presented in which a new ab initio method was successfully used to predict the 3D structure of a protein designed through an experimental approach using binary patterned combinatorial libraries of de novo sequences. The predicted structure, which was produced before the experimental structure was known and without consideration of the design goals, and the final NMR analysis both characterize this protein as a 4-helix bundle. The similarity of these structures is evidenced by both small RMSD values between the coordinates of the two structures and a detailed analysis of the helical packing.     

Identifying protein construct variants with increased crystallization propensity--a case study

This study describes an efficient multiparallel automated workflow of cloning, expression, purification, and crystallization of a large set of construct variants for isolated protein domains aimed at structure determination by X-ray crystallography. This methodology is applied to MAPKAP kinase 2, a key enzyme in the inflammation pathway and thus an attractive drug target. The study reveals a distinct subset of truncation variants with improved crystallization properties. These constructs distinguish themselves by increased solubility and stability during a parallel automated multistep purification process including removal of the recombinant tag. High-throughput protein melting point analysis characterizes this subset of constructs as particularly thermostable. Both parallel purification screening and melting point determination clearly identify residue 364 as the optimal C terminus for the kinase domain. Moreover, all three constructs that ultimately crystallized feature this C terminus. At the N terminus, only three amino acids differentiate a noncrystallizing from a crystallizing construct. This study addresses the very common issues associated with difficult to crystallize proteins, those of solubility and stability, and the crucial importance of particular residues in the formation of crystal contacts. A methodology is suggested that includes biophysical measurements to efficiently identify and produce construct variants of isolated protein domains which exhibit higher crystallization propensity.     

Application of statistically-based experimental designs for the optimization of eicosapentaenoic acid production by the diatom Nitzschia laevis

Statistically based experimental designs were applied to the optimization of medium components and environmental factors for eicosapentaenoic acid (EPA) production by the diatom Nitzschia laevis in heterotrophic conditions. First, the Plackett-Burman design was used to evaluate the effects of variables including medium components and environmental factors on cell growth and EPA production. Among these variables, NaCl, CaCl(2), PI metal solution, pH, and temperature were identified to have the significant effects (with confidence level > 90 %). Subsequently, the concentrations of NaCl, CaCl(2), PI metal solution as well as the values of pH and temperature were optimized using central composite design. The cell growth and EPA production were found to respectively correlate to NaCl, CaCl(2), pH, and temperature that could be represented by second-order polynomial models. The optimal values of the four parameters were determined by response surface and numerical analyses as 8 g/L NaCl, 0.10 g/L CaCl(2), pH 8.5 and 19.8 degrees C for cell dry weight (DW), and 14 g/L NaCl, 0.10 g/L CaCl(2), pH 8.5 and 18 degrees C for EPA production, respectively. The subsequent verification experiments confirmed the validity of the models. This optimization strategy led to a DW of 9 g/L, an EPA yield of 280 mg/L and an EPA productivity of 28 mg/L/d, respectively, which were considerably higher than those obtained in the previous studies.     

推进组织学与胚胎学双语教学培养高素质医学人材——双语教学改革阶段性成果简介

经过两年多的组织学与胚胎学双语教学改革,我们在双语教学大纲编写、课程设置、教材建设、教学工作安排和学生考试等方面,已取得了阶段性的成果,达到了学校批准立项的教学改革专项（双语课程建设）研究课题预期目标,为我们进一步完善组织学与胚胎学双语教学改革打下了坚实的基础。     

蛋白质核心设计的序列组合文库筛选方法

本文提出一种新的蛋白质序列组合文库筛选方法,异型自系统最优法,用于从头设计蛋白质核心。经λ－阻遏蛋白、噬菌体４３４ＣＲＯ蛋白、白介素－４、硫氧还蛋白、泛肽等的检验,表明此方法用于从头设计蛋白质的核心是可行的。     

引进马铃薯种质资源抗旱性评价

马铃薯属于干旱敏感型作物,当前生产上的马铃薯品种多数不耐旱,中国马铃薯抗旱育种进程又受到遗传背景狭窄的制约。引进外来种质资源,拓宽我国马铃薯遗传背景,加快选育抗旱品种是马铃薯应对干旱的关键策略。2016年和2017年,在常规滴灌和雨养条件下,利用增广设计方法,以生产上常用的5个马铃薯品种为对照,对来自国际马铃薯中心的315份高代品系和中国已有的3个品种进行抗旱性评价。通过AMMI模型和GGE模型分析基因型、环境及二者互作对产量的影响,并结合抗旱指数筛选抗旱性稳定且产量高的材料。从整体上看,在雨养条件下,两年马铃薯平均产量差异较小,但是变异系数较大,常规滴灌条件下正好相反。马铃薯产量受基因型、环境及其交互作用的显著影响,其变异平方和分别占总处理平方和的43.39%、39.36%和17.26%;C93和YS902两年的抗旱指数均高于对照品种,稳产性好,C48虽然抗旱指数相对较低,但是高产和稳产性高于所有材料。筛选出来的材料不仅可以作为抗旱育种亲本,还可以通过进一步研究其抗旱机制,为抗旱育种提供理论支持。     

吸附法纯化苦荞麦总黄酮的工艺研究

本文采用正交实验设计,对影响苦养麦总黄酮纯化工艺的因素进行了系统研究。结果发现,影响吸附法纯化苦养麦总黄酮的主次因素为吸附剂的种类〉洗脱液（乙醇）浓度〉静置吸附时间〉上样量,其中吸附剂的种类、洗脱液（乙醇）浓度以及静置吸附时间均对苦养麦总黄酮的纯化有显著性影响;吸附法纯化苦养麦总黄酮的最佳工艺条件为：AB-8树脂为苦养麦总黄酮最佳纯化吸附剂、95％乙醇洗脱、静置吸附时间30min、上样量1mL。