Lectotypification and description of Clematis viticella L. (Ranunculaceae)

The typification of Clematis viticella L. is discussed, and a lectotype designated from the Clifford Herbarium (BM). A standard specimen for C. viticella 'Purpurea Plena Elegans' has also been selected. Data from hybridization experiments and studies of natural distribution suggest that Clematis campaniflora Brotero is better treated as a subspecies, i.e. as C. viticella subsp. campaniflora (Brotero) Font Quer ex O. Bolòs & Vigo, than as either a species or variety.     

Ecological significance of floristic composition and life forms of Riyadh region,Central Saudi Arabia

Riyadh region is one of the hardest habitats in Saudi Arabia with a hyper-arid climate. This study was conducted to investigate floristic composition and plant life forms of Riyadh region and their ecological significance. Work aimed to determine the prevailing plant families and biological spectrum of their components that reflects the phytoclimate and adaptation to hyper-arid conditions of the region. Work involved field surveys of different locations in Riyadh region where plant specimens were collected and identified. Collected plant species were then listed according to their families and data were used to assess the contribution of different plant families to the flora of the region. Study of life forms was conducted to classify recorded floristic elements into categories that reflect environmental conditions prevailing in the region. Prevailing plant families were Asteraceae (17.4%), Poaceae (11%), Brassicaceae (9.9%), and Fabaceae (7%). These percentages reflect wide ecological ranges especially for Asteraceae and Poaceae. High presence of species belonging to Astreaceae and Poaceae can be attributed to their adaptation to harsh conditions as well as to effective wind dispersal strategies of their diaspores. While the most frequent life form classes were therophytes with 52%, and chamaephytes with 30%, phanerophytes and hemicryptophytes represented 9% and 8%, respectively. Predominance of therophytes and chamaephytes over other life forms is a response to hyper arid climate with insufficient rainfall and the nature of region of few available microhabitats that can support high percentage of perennials.     

Eye color prediction using single nucleotide polymorphisms in Saudi population

BackgroundDNA prediction of eye color represent one application of the externally visible characteristics (EVC), which attained growing interest in the field of DNA forensic phenotyping. This is mainly due to its ability to narrow the pool of suspects without the need to compare any retrieved DNA material from the crime scene to a reference DNA. Several methods and multiplex genetic panel were proposed with variable prediction accuracy between different populations. However, such panel was not previously tested in the Saudi population, nor any populations of the Middle East and North Africa origin.MethodA panel of eleven single nucleotide polymorphisms (SNPs) was tested for their association with three eye colors (brown, hazel, and intermediate) in 80 volunteer Saudi individuals. SNPs and haplotype association test with eye colors were performed to identify the top significant SNPs with the three eye colors. Also, multinomial logistic regression was used to construct the prediction model using a training set of 60 subjects, and a validation set of 20 subjects. The goodness of fit parameter of the model to correctly predicts each eye color as compared to the other was performed.ResultsEye color was significantly associated with rs12913832, rs7170852, and rs916977 that are located within HERC2. SNP rs12913832 was the top significant SNP (p-value = 1.78E?15) that accounted for the association in this region, as the other SNPs were not significant after adjusting for rs12913832. A prediction model containing five SNPs showed high prediction accuracy with Area Under the receiver operating characteristic Curves (AUC) equals to 0.95 and 0.83 for brown and intermediate eye colors, respectively. However, the model’s performance was very low for predicting the hazel eye color with AUC equals 0.75.DiscussionDespite the small sample size of our study, we reported very significant SNP associations with eye color. Our model to predict eye colors based on DNA material showed high accuracy for brown and intermediate eye colors. The eye color prediction-model underperformed for the hazel eye colors, suggesting that larger sample size, as well as more comprehensive set of SNPs, could improve the model-prediction accuracy.     

Antibiotic-resistant Staphylococcus epidermidis isolated from patients and healthy students comparing with antibiotic-resistant bacteria isolated from pasteurized milk

Antibiotic-resistant Staphylococci are a global issue affecting humans, animals, and numerous natural environments. Antibiotic-resistant Staphylococcus epidermidis is an opportunistic pathogen frequently isolated from patients and healthy individuals. This study aimed to examine the antibiotic resistance of S. epidermidis isolated from patients, healthy students and compare the results with antibiotic-resistant bacteria isolated from pasteurized milk. Clinical strain isolation was performed in several hospitals in the Riyadh. Skin swabs from 100 healthy undergraduate candidate students were obtained at King Saud University. The pasteurized milk samples were obtained from local market (company, X). After isolation, identification and susceptibility tests were performed using an automated system. A multiplex tuf gene-based PCR assay was used to confirm identification. Biofilm production and biofilm-related gene expression were studied. S. epidermidis represented 17% of clinical bacterial isolates, and 1.7% of isolates obtained from healthy students were multiantibiotic-resistant. All patient strains were teicoplanin- and vancomycin-susceptible, while all student strains were gentamicin-, levofloxacin-, moxifloxacin-, and trimethoprim/sulfamethoxazole-susceptible. All the bacteria isolated from pasteurized milk were benzylpenicillin and oxacillin-resistant strains. Of the S. epidermidis strains, 91% could produce biofilms, and mecA, icaADBR, ica-ADB, ica-AD, ica-A only, and ica-C only were expressed in 83, 17.1, 25.7, 37.1, 20, and 0% of the strains, respectively. This work demonstrates that S. epidermidis can be accurately identified using a multiplex tuf-based assay, and that multiantibiotic-resistant S. epidermidis strains are widespread amongst patients and healthy students.     

Investigating the response of soil and vegetable crops to poultry and cow manure using ground and satellite data

Based on the massive production of cow and poultry manures, farmers in Saudi Arabia are moving towards the application of organic fertilizers in their farms. Therefore, the present work was conducted to study the response of soil and selected vegetable crops to poultry and cow manures, using ground data and Landsat-8 and Hyperion images. The studied vegetable crops are cabbage, cauliflower, broccoli, and lettuce. A total of 100 t ha^?1 organic manures were applied as a pre-planting treatment. A 12.5 ha field in Tawdeehiya Farms, 200 km southeast of Riyadh, was earmarked for this study. The field was divided into sectors cultivated with the above-mentioned vegetable crops. Soil characteristics, including the soil pH, the electric conductivity (EC), the nitrogen (N), the phosphorus (P) and the potassium (K), were examined before the application of manures and 25 days after the transplanting process. Observations on crops chlorophyll content, number of leaves, the diameter of merchantable products and yield were also investigated. Furthermore, the relationship between the crop performance and yield was investigated through the satellite images generated vegetation indices (VIs). This study revealed the better performance of poultry manure compared to cow manure in terms of development and production parameters of the experimental crops. Dynamics of the chlorophyll content across the crop growth period revealed that all the tested crops responded significantly (R² = 0.69; P = 0.001) to the poultry manure treatments. Among the tested crops, the chlorophyll content, curd or head sizes and crop yields were quite better in poultry manure applied plots. The investigation of crop yield was significant with poultry manure (R² = 0.64; P = 0.001) than cow manure (R² = 0.57; P = 0.001) using the OSAVI and mNDVI, respectively.     

Soil ciliates of the Indian Delhi Region: Their community characteristics with emphasis on their ecological implications as sensitive bio-indicators for soil quality

The present investigation aims to study the diversity of ciliates from different habitats in and around Delhi, India, and the correlation of this diversity with soil quality {agricultural lands (site 1 and 2), dump yards (site 3 and 4), sewage treatment plant (site 5), residential land (site 6), landfill (site 7) and barren land (site 8)}. Various physicochemical parameters of the different soil samples were studied and analysed for soil texture, interstitial water, pH, conductivity, total organic carbon, total organic matter, total nitrogen and phosphorous content, using standard protocols. Seventeen ciliate taxa belonging to four classes, seven orders, ten families, and 17 genera were recorded, with the maximum number of species (eleven) belonging to the class Spirotrichea. Ciliate diversity was highest at sites 5 and 6 and lowest at sites 1 and 2. Spathidium sp. was the dominant species in the conditioned land (site 8), while the ciliate Colpoda sp. was present in all the sites examined, showing the highest population density in the sewage treatment plant site (site 5). Statistical analysis showed that ciliate diversity was positively correlated to physicochemical parameters such as interstitial water, total organic matter and organic carbon, total nitrogen and total phosphorous content. Analyses of spirotrichs/colpodids (S/C) ratio and diversity indices implied that the habitat conditions of sites 1, 2, 3 and 8 are relatively unfavourable for soil ciliates to flourish; while sites 4, 5, 6 and 7 provided more favourable conditions. The ubiquity of ciliate distribution suggests their important role in the soil food webs and nutrient cycling, and their community structure and specific characteristics appear to be of major importance for soil formation. A full understanding of soil ciliate diversity and physicochemical parameters helps to inform best practice for improving soil quality as well as conservation practices for sustainable development and management of farms and cultivated lands. In conclusion, ciliate diversity serves as an important and sensitive bio-indicator for soil quality.     

Susceptibility of mice strains to oxidative stress and neurotransmitter activity induced by Plasmodium berghei

This study investigated the susceptibility of female C57Bl/6 and Swiss Albino mice to oxidative stress and neurotransmitters activity induced by Plasmodium berghei. On day 9 p.i. with P. berghei infected erythrocytes, the mice reduced in weight. This weight loss was markedly higher in SW mice and reached about ?14%. Also, the infection was able to cause oxidative damage to the brain tissue. Catalase activity as well as glutathione, malondialdehyde and nitric oxide levels were different in the two mice strains. Moreover, the brain content of neurotransmitters, epinephrine, norepinephrine, dopamine and serotonin in mice brain was higher in SW mice than B6 mice. We concluded that, the strain of mice is one factor that could alter the response of mice to P. berghei infection.     

Mechanism of bromocriptine-induced hyperglycaemia

Results reveal that bromocriptine at a dose of 6 mg/kg. I.P. in mice caused a significant hyperglycaemic effect which was accompanied by a marked increase in liver glycogen. After adrenalectomy, the effect of bromocriptine on serum glucose level was reduced whereas its effect on liver glycogen content was abolished. In rats, administration of bromocriptine (17.5 mg/kg I.P.) induced a significant rise in serum glucose level which was associated with marked reduction in serum insulin activity and increase in serum corticosterone level with no effect on serum triiodothyronine (T3) or thyroxine (T4) levels. It could be concluded that bromocriptine-induced hyperglycaemia might be attributed at least partially to inhibition of insulin release and stimulation of corticosterone secretion.     

Green synthesis of ZnO hierarchical microstructures by Cordia myxa and their antibacterial activity

In this study, the leaves extract of Cordia myxa, has been used for the first time to synthesize zinc oxide (ZnO) hierarchical microstructures. The solution combustion method was employed as a self-sustaining reaction between zinc nitrate and the leaves extract. The surface properties of leaves mediated ZnO microstructures were determined by UV–Visible spectral analysis, Fourier transform infrared (FT-IR), Cold field emission-scanning electron microscopy (CFE-SEM), Energy dispersive X-ray (EDX), X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS). In addition, the effect of the leaves extract concentration on ZnO structures, size and surface properties was also studied. ZnO structures synthesized employing C. myxa were found to be hexagonal, triangular and round in shape which was determined using CFE-SEM. X-ray diffraction (XRD) analysis confirmed the crystalline nature of compounds. Furthermore, C. myxa mediated ZnO microstructures shows good bactericidal activity against Gram-negative (Escherichia coli) and Gram-positive (Staphylococcus aureus) bacteria.     

Isolation of antimicrobial producing Actinobacteria from soil samples

Emergence of multidrug resistant bacteria has made the search for novel bioactive compounds from natural and unexplored habitats a necessity. Actinobacteria have important bioactive substances. The present study investigated antimicrobial activity of Actinobacteria isolated from soil samples of Egypt. One hundred samples were collected from agricultural farming soil of different governorates. Twelve isolates have produced activity against the tested microorganisms (S. aureus, Bacillus cereus, E. coli, K. pneumoniae, P. aeruginosa, S. Typhi, C. albicans, A. niger and A. flavus). By VITEK 2 system version: 07.01 the 12 isolates were identified as Kocuria kristinae, Kocuria rosea, Streptomyces griseus, Streptomyces flaveolus and Actinobacteria. Using ethyl acetate extraction method the isolates culture’s supernatants were tested by diffusion method against indicator microorganisms. These results indicate that Actinobacteria isolated from Egypt farms could be sources of antimicrobial bioactive substances.