Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection

The present study aims to investigate small RNA interactions with putative disease response genes in the model grass species Brachypodium distachyon. The fungal pathogen Fusarium culmorum (Fusarium herein) and phytohormone salicylic acid treatment were used to induce the disease response in Brachypodium. Initially, 121 different putative disease response genes were identified using bioinformatic and homology based approaches. Computational prediction was used to identify 33 candidate new miRNA coding sequences, of which 9 were verified by analysis of small RNA sequence libraries. Putative Brachypodium miRNA target sites were identified in the disease response genes, and a subset of which were screened for expression and possible miRNA interactions in 5 different Brachypodium lines infected with Fusarium. An NBS-LRR family gene, 1g34430, was polymorphic among the lines, forming two major genotypes, one of which has its miRNA target sites deleted, resulting in altered gene expression during infection. There were siRNAs putatively involved in regulation of this gene, indicating a role of small RNAs in the B. distachyon disease response.     

Methane emissions from fen,bog and swamp peatlands in Quebec

A static chamber technique was used weekly from spring thaw to winter freezing to measure methane emissions from 10 sites representing subarctic fens and temperate swamps and bogs. Rates of < 200 mg CH₄ m^–2 d^–1 were recorded in subarctic fens: within-site emissions were primarily controlled by the evolution of the peat thermal regime, though significant releases during spring thaw were recorded at some sites. Between subarctic fens, topography and water table elevation were important controls on methane emissions, with the general sequence: pool = horizontal fen> string. Emission rates from the 2 swamp sites were lower (< 20 mg CH₄ m^–2 d^–1 ), except during the spring thaw and when the sites were saturated. The low water table ( < 80 cm depth) in abnormally dry years reduced emission rates; rates were also low from a swamp site which had been drained and cleared of vegetation for horticulture. Methane emission rates were also low (< 5 mg CH₄ m^–2 d^–1) from 2 ombrotrophic bog sites. Laboratory measurements of rates of methane production under anaerobic conditions and methane consumption under aerobic conditions revealed that production rates were generally highest in the surface layers (0 to 2.5 cm depth); production was high in the fens and very low in the bogs. The swamp samples were able to produce methane under anaerobic conditions, but were also able to consume methane under aerobic conditions. Annual methane emission rates are estimated to be 1 to 10 g CH₄ m^–2 from the fens, 1 to 4 g CH4 m^–2 from the swamps and <0.2 g CH₄ m^–2 from the bogs and drained swamp.     

Fungal and Bacterial Activity in Northern Peatlands

Selective inhibition of substrate-induced respiration with antibiotics cycloheximide and streptomycin sulphate provided insight into eukaryotic versus prokaryotic activities in surface peat soil of three Canadian peatlands. Prokaryotic and eukaryotic communities in peatlands are important in the net sequestration of atmospheric carbon dioxide and therefore play a unique role in global carbon cycling. Selective inhibition techniques were generally successful, with a maximum non-target inhibition of only 17%. Assuming that eukaryotic and prokaryotic activities were dominated by fungi and bacteria respectively, across 3 ecologically and hydrologically diverse and spatially dispersed peatlands, we demonstrated bacterial dominance in a bog and a poor fen both with acidic and primarily Sphagnum derived peat soil and in a near pH neutral wetter rich fen with sedge peat (fungal to bacterial activity ratio = 0.31 to 0.68). These results differ in that in other acidic environments, such as conifer forest soils, fungal to bacterial activity ratios are mostly greater than 1 indicative of fungal dominance.     

Patterned fens in Scotland: evidence from vegetation and water chemistry

Mires with attributes similar to the patterned fens of boreal continental regions have recently been reported from northern Scotland. This paper reports on the vegetation and water chemistry of 18 of these sites. Most of the 18 mires displayed remarkable uniformity in their vegetation, with Carex lasiocarpa being a main character species. Major variation of plant communities is associated with microtopographical niches, similar to those found on ombrotrophic mire systems and secondarily with pH and conductivity of surface waters. Nine vegetation noda are described and compared with existing phytosociological associations and National Vegetation Classification (NVC) communities. The dominant Sphagnum - Carex communities are intermediate between the Oxycocco-Sphagnetea and the Caricion lasiocarpae and are thus difficult to assign to existing associations or to NVC communities. Although there is a large variation in pH of surface waters (3.9–6.6), mean measurements for terrestrial and aquatic communities are 5.12 and 5.51 respectively. pH levels are comparable with poor fen systems elsewhere in Britain and slightly higher than patterned fens in continental regions of Europe and North America. The vegeta-tional and chemical attributes of these sites therefore confirm the existence of true patterned fen systems in the British Isles.     

Restoration of Wet Fen Meadows by Topsoil Removal: Vegetation Development and Germination Biology of Fen Species

The present investigation was part of a fen restoration project, which deals with the rehabilitation of a deeply drained peat land used for intensive agriculture for more than 200 years. Consequently, the conditions for restoration are unfavorable. The hay of well‐developed fen meadows from nature reserves in the region appeared to contain enough viable seeds to act as a source for the development of target communities when spread out on bare peat after topsoil removal. Repeated vegetation analysis showed that a combination of topsoil removal and hay transfer resulted in the establishment of new populations in the target area for 70% of the species of the donor area. Germination conditions of fen species were investigated to determine the optimal combination for stimulating germination rates. Most fen species were found to be dormant, and it was shown that dormancy could be broken with fluctuating light and temperature cycles and stratification pre‐treatment.     

Interactions of Plasmodium falciparum erythrocyte membrane protein 3 with the red blood cell membrane skeleton

Plasmodium falciparum parasites express and traffick numerous proteins into the red blood cell (RBC), where some associate specifically with the membrane skeleton. Importantly, these interactions underlie the major alterations to the modified structural and functional properties of the parasite-infected RBC. P. falciparum Erythrocyte Membrane Protein 3 (PfEMP3) is one such parasite protein that is found in association with the membrane skeleton. Using recombinant PfEMP3 proteins in vitro, we have identified the region of PfEMP3 that binds to the RBC membrane skeleton, specifically to spectrin and actin. Kinetic studies revealed that residues 38-97 of PfEMP3 bound to purified spectrin with moderately high affinity (K_D(kin) = 8.5 × 10^− 8 M). Subsequent deletion mapping analysis further defined the binding domain to a 14-residue sequence (IFEIRLKRSLAQVL; K_D(kin) = 3.8 × 10^− 7 M). Interestingly, this same domain also bound to F-actin in a specific and saturable manner. These interactions are of physiological relevance as evidenced by the binding of this region to the membrane skeleton of inside-out RBCs and when introduced into resealed RBCs. Identification of a 14-residue region of PfEMP3 that binds to both spectrin and actin provides insight into the potential function of PfEMP3 in P. falciparum-infected RBCs.