A review of issues related to the quantification of bacteria from the phyllosphere

Abstract: Quantification of the size of epiphytic bacterial populations and characterization of their composition involves definition of a sampling strategy in time and space, the choice of methods for liberating the bacteria from the leaf surface and for recovering them for subsequent determination of the number of viable or culturable cells. This literature review focuses on some of the issues related to these choices. After briefly reviewing the different types of epiphytic colonizers we consider the biological, methodological, and statistical consequences of the choice of the sampling unit and of the spatial and temporal variability of population size and composition for epiphytic bacteria. The different methods available for the detection and enumeration of naturally occurring microorganisms in the phyllosphere are discussed. Advantages and drawbacks of each are described in this review designed as a 'hands-on' guide.     

Nitrogen fixation (C2H2 reduction) in soil samples from rhizosphere of rice grown under alternate flooded and nonflooded conditions

Summary In a greenhouse study the influence of alternate flooded and nonflooded conditions on the N₂-ase activity of rice rhizosphere soil was investigated by C₂H₂ reduction assay. The soil fraction attached to roots represent the rhizosphere soil. Soil submergence always accelerated N₂-ase and this effect was more pronounced in planted system. Moreover, rice plant exhibited phase-dependent N₂-ase with a maximum activity at 60 days after transplanting. The alternate flooded and nonflooded regimes resulted in alterations of the N₂-ase activity. Thus, the N₂-ase activity increased following a shift from nonflooded to flooded conditions, but the activity decreased when the flooded soil was returned to nonflooded condition by draining. However, the differential influence of the water regime on N₂-ase was not marked in prolonged flooded-nonflooded cycles. Microbial analysis indicated the stimulation of different groups of free-living and associative N₂-fixing microorganisms depending on the water regime.     

Microbial populations in trifluralin-treated soil

Summary This study examined the effects of trifluralin (,,-trifluoro-2,6-dinitro-N,N-dipropyl-p-toluidine), a soil incorporated herbicide, on soil microflora both in the general soil environment and in the rhizosphere of trifluralin damaged wheat roots. Two Dark Brown Chernozemic soils were treated with various trifluralin rates in the growth chamber and wheat [Triticum aestivum L. Neepawa] was seeded. Trifluralin generally had no effect on fungi, bacteria, or actinomycete populations in either the general soil or in the rhizosphere. CO₂ evolution was unchanged when trifluralin was added to the soil. In wheat plots, at two field locations, there were no significant effects of trifluralin (1.0 kg ha^–1) on soil fungi, bacteria, actinomycete, denitrifying bacteria, and nitrifying Nitrobacter propulations. A pure culture study with 42 soil microorganisms showed that many isolates were inhibited at 400 to 100,000 g g^–1 but not at concentrations <16 g g^–1. Similar data were obtained from tests on four different soils. These studies indicate that trifluralin is unlikely to cause changes in the numbers of soil microorganisms when used at recommended levels.     

Effects of inorganic amendments (N,P and K) to soil on the rhizosphere microflora of antirrhinum plants infected withVerticillium dahliae Kleb

Summary A study of the inorganic amendments (N, P and K) to soil, and their effect on the rhizosphere microflora, as well as their relation to the control of wilt of antirrhinum plants caused byVerticillium dahliae Kleb. was done. Ammonium sulphate was the only chemical found to be significantly inhibitory toV. dahliae in vitro. Soil amendments (NPK) affected the rhizosphere microorganisms of the antirrhinum plants. Higher concentration of the chemicals were phytotoxic. It was further observed that ammonium sulphate, and the combined chemicals (NPK 25%) in soil delayed the senescence in healthy plants, suggests that chemical fertilisers affected the host plants directly. Addition of ammonium sulphate (0.25%), calcium nitrate (0.25%, 0.5%) combined NPK (0.25%) to soil caused considerable reduction in disease severity. It is assumed that this reduction may be caused by the (1) fungitoxic nature of the chemicali.e. ammonium sulphate, (2) antagonistic environment for the pathogen in the rhizosphere was boostedi.e. where calcium nitrate was added as soil amendments and (3) reduction in disease severity in soil-amended with combined NPK, may be due to the fact that antagonistic actinomycete population was boosted in the rhizosphere.     

A direct observation technique for studies on rhizoplane and rhizosphere colonization

Summary A slide incubation chamber was described which allowed small plants to be grown from seed and the root systems to be observed microscopically. A fluorescence stain, the ammonium salt of 8-anilino-1-naphthalene sulfonic acid, was applied to the soil in which the roots were growing and the stained microorganisms on the roots and in the rhizosphere were counted. A statistical pattern analysis technique, the two-within-four randomization test, was used to analyze the data obtained from quadrats on the roots. Distinct colonization patterns and colony growth, especially of bacteria, were easily distinguished with the technique.     

根际中硅、铁、锰和铝的状况与水稻生长

本文以根盒试验与盆栽试验相结合的方法,研究了红壤性水稻土、淀浆白土、第四纪红土和赤红壤植稻后根际微生态系统中Si、Fe、Mn和Al等元素的状况及其与水稻生长的关系。结果表明,新垦红壤植稻后根际中活性Fe和Al富集;活性Mn量降低,但亏缺率小;活性Si则亏缺不明显,有时甚至富集。而熟化水稻土植稻后根际中活性Fe和Al则出现亏缺;Mn的亏缺较大,且差值明显;活性Si的亏缺现象更为显著。由于新垦红壤植稻后Fe和Al在根际微生态系统中富集,根茎叶中累积量较高,从而使Si、P和Mn等元素的吸收受阻,导致新垦红壤上水稻生长明显比熟化水稻土上的水稻要差。     

The effect of nitrate-nitrogen supply on bacteria and bacterial-feeding fauna in the rhizosphere of different grass species

Summary Microbial growth in the rhizosphere is affected by the release of organic material from roots, so differences in carbon budgets between plants may affect their rhizosphere biology. This was tested by sampling populations of bacteria and bacteriophagous fauna from the rhizosphere of Lolium perenne, Festuca arundinacea, Poa annua, and Poa pratensis, under conditions of high and low nitrate availability. Concentrations of soluble phenolics and lignin varied considerably between the species but were not related to differences in rhizosphere biology. L. perenne and F. arundinacea supported fewer bacteria than the Poa species. There was no significant rhizosphere effect on the groups of protozoa. The major indicators of rhizosphere productivity were the bacterial-feeding nematodes (mainly Acrobeloides spp.), and there was a large positive effect of added nitrate. Nematode biomass was significantly lower in the rhizosphere of the slow-growing P. pratensis compared with the fast-growing P. annua, indicating that the differential allocation of carbon has affects on rhizosphere biology. A large rhizosphere effect on enchytraeid worms was also observed, and their potential importance in the rhizosphere is discussed.     

Ammonium and nitrate uptake rates and rhizosphere pH in non-mycorrhizal roots of Norway spruce [Picea abies (L.) Karst.]

Summary Relationships between root zone temperature, concentrations and uptake rates of NH ₄ ⁺ and NO ₃ ^– were studied in non-mycorrhizal roots of 4-year-old Norway spruce under controlled environmental conditions. Additionally, in a forest stand NH ₄ ⁺ and NO ₃ ^– uptake rates along the root axis and changes in the rhizosphere pH were measured. In the concentration (C_min) range of 100–150 M uptake rates of NH ₄ ⁺ were 3–4 times higher than those of NO ₃ ^– The preference for NH ₄ ⁺ uptake was also reflected in the minimum concentration (C_min) values. Supplying NH₄NO₃, the rate of NO ₃ ^– uptake was very low until the NH ₄ ⁺ concentrations had fallen below about 100 M. The shift from NH ₄ ⁺ to NO ₃ ^– uptake was correlated with a corresponding shift from net H⁺ production to net H⁺ consumption in the external solution. The uptake rates of NH ₄ ⁺ were correlated with equimolar net production of H⁺. With NO ₃ ^– nutrition net consumption of H⁺ was approximately twice as high as uptake rates of NO ₃ ^– In the forest stand the NO ₃ ^– concentration in the soil solution was more than 10 times higher than the NH ₄ ⁺ concentration (<100 M), and the rhizosphere pH of non-mycorrhizal roots considerably higher than the bulk soil pH. The rhizosphere pH increase was particularly evident in apical root zones where the rates of water and NO ₃ ^– uptake and nitrate reductase activity were also higher. The results are summarized in a model of water and nutrient transport to, and uptake by, non-mycorrhizal roots of Norway spruce in a forest stand. Model calculations indicate that delivery to the roots by mass flow may meet most of the plant demand of nitrogen and calcium, and that non-mycorrhizal root tips have the potential to take up most of the delivered nitrate and calcium.     

Urea hydrolysis in some tea soils

The influence of application of hexachlorocyclohexane (HCH=gamma BHC), to a submerged tropical field soil at rates equivalent to recommended field rates (1–2.5kg a.i./ha) and twice this level, upon the rhizosphere soil nitrogenase, nitrogen fixers, and soil redox potential (Eh) was investigated. The rhizosphere soil from HCH-treated field exhibited significantly higher nitrogenase activity than that from untreated fields. HCH retarded the drop in redox potential of the field soil upto 80 days after transplantation under submerged conditions. Populations of nitrogen-fixingAzospirillum sp. and Azotobacter, to a greater extent, and anaerobic organisms, to a lesser extent, were stimulated in HCH-treated soils. Results indicate the stimulation of heterotrophic nitrogen-fixing bacteria by HCH in submerged paddy soils.     

Effect of the chemical and physical condition of the soil on Verticillium wilt of antirrhinum

Summary In vitro study showed thatVerticillium dahliae Kleb. grew well in a wide range of acid and alkaline media (viz. pH 3.5 to 10.5). The best growth of the fungus was observed in pH 5.5. Soil pH 3.5 was toxic for growing antirrhinum seedlings. Development of Verticillium wilt of antirrhinum was affected by soil pH. The severity of the disease was greater in alkaline soil conditions compared with acid conditions. Soil of pH 3.5 gave very good control of the symptom expression by the infected plants. Rhizosphere analysis results showed that fungal population with the exception ofPenicillium spp., was drastically reduced in the rhizosphere of the plants grown in acid soil. Although the overall population of fungi was reduced in theV. dahliae infected antirrhinum rhizosphere in acid soil, the population ofPenicillium spp. markedly increased. The antagonistic activity of thePenicillium spp. in the rhizosphere might also have reduced the disease severity. Since the seedlings did not grow properly in very dry and very wet soil, rhizosphere analysis of these soils was not possible. Disease severity was much less in wet soil compared with plants grown in medium moisture level and dry soil, but the plant growth was very poor. Dedicated to the memory of the late Prof. H. K. Baruah from whom I had the inspiration for research