The Molecular Biology of Euglena gracilis. VIII. Glycitols and Monosaccharides

Mannitol is identified as the major component of the small molecule pool of Euglena gracilis strain Z. Smaller amounts of glycerol also are found. Results of tracer studies and enzymic measurements indicate that both major mannitol pathways found in bacteria are present in Euglena.     

Application of Covariance Analysis to Ophtalmologic Research

Using covariance analysis as an adjusted regression analysis it is possible, with the assumption of homogeneity and normality of variance, to test several regression functions for homogeneity, if the given groups of data material are independent. This well-known analysis is applied to a number of examination methods of ophthalmology. In the cases of ophthalmo-dynamography (ODG) and ophthalmo-dynamometry (ODM), the paper answers the question to what extent the result of ophthalmologic measurement is influenced by posture (sitting — lying — standing). Contrary to several authors' practice of combining the regression lines for the systolic and diastolic blood-pressure because of the improvement of the correlation coefficient to be achieved in this way, it was possible to show that generally such an approach is not recommendable. Patients suffering from a certain type of arteriosclerosis distinguish themselves by deviations of their ODG data from the normal blood-pressure relation of the arteria carotis interna and the arteria brachialis. These differences can be tested for statistical significance by means of covariance analysis.     

Cover plus: ways of measuring plant canopies and the terms used for them

Aim: To clarify the concepts and terms that have been used in recording plant canopies and the methods used for measuring them. Concepts: The concepts considered are cover, top cover, repeated cover, number of layers, proportion of repeated cover and leaf area index (LAI). Variants include canopy cover, basal area and leaf area density. Other terms have been used in the past, some are now ambiguous and some are counter‐intuitive. Measurement: Cover and its related concepts can be measured by point intercept, line intercept, angle sampling, charting and image analysis, canopy transmittance, complete enumeration, clipping and allometry. The common procedure of adding the cover of individual species to calculate a “total cover” is invalid: a nonsense number is produced. Other measures of abundance: Cover‐abundance, density, frequency, biomass and calorific values can also be used to measure abundance. They are related to cover. Especially, shoot frequency at a point is cover (the point intercept method). Subjective estimates: There are severe problems with cover‐abundance scales, such as that of Braun‐Blanquet. Estimation of abundance “by eye”, by “informed guess”, etc. has too often compromised results in vegetation science.     

Application of repeated aspartate tags to improving extracellular production of Escherichia coli l-asparaginase isozyme II

Asparaginase isozyme II from Escherichia coli is a popular enzyme that has been used as a therapeutic agent against acute lymphoblastic leukemia. Here, fusion tag systems consisting of the pelB signal sequence and various lengths of repeated aspartate tags were devised to highly express and to release active asparaginase isozyme II extracellularly in E. coli. Among several constructs, recombinant asparaginase isozyme II fused with the pelB signal sequence and five aspartate tag was secreted efficiently into culture medium at 34.6 U/mg cell of specific activity. By batch fermentation, recombinant E. coli produced 40.8 U/ml asparaginase isozyme II in the medium. In addition, deletion of the gspDE gene reduced extracellular production of asparaginase isozyme II, indicating that secretion of recombinant asparaginase isozyme II was partially ascribed to the recognition by the general secretion machinery. This tag system composed of the pelB signal peptide, and repeated aspartates can be applied to extracellular production of other recombinant proteins.     

The uropod as a proxy for total length distribution in Antarctic krill: an assessment of different models

The properties of the regression of standard length on the length of the exopodit of the uropod of Euphausia superba as a method to estimate the distribution of the standard length from penguin stomach contents samples are explored. The distance between the estimated and observed distributions was measured with the Kolmogorov–Smirnov statistic. Sample variability was determined using resampling techniques. The ability of linear functions (Models I and II), allometric and non-parametric methods to recover the observed distributions was evaluated within samples and exchanging parameters between samples. Linear and allometric models proved inadequate to recover the distribution, while the differences obtained with non-parametric methods fall within the bounds of sample variability, suggesting that a linear equation does not capture the relation between total and exopodit length. The use of a non-parametric regression is recommended to increase the sample size when estimating the distributions of prey lengths in the stomach contents of Antarctic penguins.     

Handedness related differences in the intracranial fluid spaces in healthy adults

Abstract

Purpose: Our study aimed to determine the possible differences in linear measurements and linear indices values of intracranial fluid spaces (IFS) between right- and left-handed adults.

Methods: This work has been carried out on 148 subjects (72 men and 76 women). In the study, 88 right-handers and 60 left-handers were included. Forty of the right-handers were male, 48 were female, and 32 of the left-handers were male, and 28 were female. The ages were between 20 and 50?years. Linear measurements were obtained based on magnetic resonance imaging (MRI) studies. A 1.5-T MRI scanner was used to obtain axial images. The ten parameters were estimated from MRI scans.

Results: There was no correlation between parameters and age. In our study, interestingly, as can be seen from the tables, most of the parameters with statistically significant differences were higher in favour of left-handed subjects. In most of the linear measurement results, IFS values of the right hemisphere in right-handers, and the left hemisphere in left-handers were higher. Similar results were found in favour of the left-handed in most of the linear ventricular indices.

Conclusion: Linear measurements and linear indices values of IFS were mostly higher in left-handers than in right-handed individuals.     

Extent and variability of interstitial telomeric sequences and their effects on estimates of telomere length

Telomeres often shorten with time, although this varies between tissues, individuals and species, and their length and/or rate of change may reflect fitness and rate of senescence. Measurement of telomeres is increasingly important to ecologists, yet the relative merits of different methods for estimating telomere length are not clear. In particular the extent to which interstitial telomere sequences (ITSs), telomere repeats located away from chromosomes ends, confound estimates of telomere length is unknown. Here we present a method to estimate the extent of ITS within a species and variation among individuals. We estimated the extent of ITS by comparing the amount of label hybridized to in‐gel telomere restriction fragments (TRF) before and after the TRFs were denatured. This protocol produced robust and repeatable estimates of the extent of ITS in birds. In five species, the amount of ITS was substantial, ranging from 15% to 40% of total telomeric sequence DNA. In addition, the amount of ITS can vary significantly among individuals within a species. Including ITSs in telomere length calculations always underestimated telomere length because most ITSs are shorter than most telomeres. The magnitude of that error varies with telomere length and is larger for longer telomeres. Estimating telomere length using methods that incorporate ITSs, such as Southern blot TRF and quantitative PCR analyses reduces an investigator's power to detect difference in telomere dynamics between individuals or over time within an individual.     

Analysis of Repeated Measurements with Ante-Dependence Covariance Models

This paper considers the use of ante-dependence models in problems with repeated measures through time. These are conditional regression models which reflect the dependence of a measure on some of the previous observations from the same subject. We present maximum likelihood estimators of the covariance matrix and procedures for selecting the order of ante-degendence based on penalized like-lihoods. Extensions to missing data situations are discussed. We propose Wald-type test statistics and apply them in two situations common in experiments with repeated measures: one with pre-study observations and another one with small sample size relative to the number of time periods. In these examples, tests assuming ante-dependence find effects which are not detected using competing procedures.