Integrating remote sensing and local ecological knowledge to monitor rangeland dynamics

Rangelands are among the most extensive anthropogenic landscapes on earth, supporting nearly 500 million people. Disagreements over the extent and severity of rangeland degradation affect pastoralist livelihoods, especially when impacts of drought and over-grazing are confounded. While vegetation indices (such as NDVI, or Normalized Difference Vegetation Index) derived from remotely sensed imagery are often used to monitor rangelands, their strategic integration with local ecological knowledge (LEK) is under-appreciated. Here, we explore these complementary approaches in Kyrgyzstan’s pasture-rich province of Naryn, where disagreements regarding pasture degradation could greatly benefit from additional information. We examine a time series of MODIS satellite imagery (2000–2015) to characterize browning trends in vegetation as well as to distinguish between climate- and grazing-induced trends. We also compare and contrast measured trends with LEK perceptions of pasture degradation. To do so, we first examine statistical trends in NDVI as well as in NDVI residuals after de-trending with meteorological data. Second, we use participatory mapping to identify areas local pasture managers believe are overgrazed, a particularly useful approach in lieu of reliable historical stocking rates for livestock in this region. Lastly, we compare the strengths and weaknesses of LEK and remote sensing for landscape monitoring.Browning trends were widespread as declining trends in NDVI (and NDVI residuals) covered 24% (and 9%) of the landscape, respectively. Local managers’ perceptions of pasture degradation better reflected trends seen in NDVI than in climate-controlled NDVI residuals, suggesting patterns in the latter are less apparent to managers. Our approach demonstrated great potential for the integration of two inexpensive and effective methods of rangeland monitoring well-suited to the country’s needs. Despite limitations due to terrain, our approach was most successful within the semi-arid steppe where pasture degradation is believed to be most severe. In many parts of the world, sources of long-term spatially extensive data are rare or even non-existent. Thus, paired LEK and remote sensing can contribute to comprehensive and informative assessments of land degradation, especially where contentious management issues intersect with sparse data availability. LEK is a valuable source of complementary information to remote sensing and should be integrated more routinely and formally into landscape monitoring. To aid this endeavor, we synthesize advice for linking LEK and remote sensing across diverse landscape situations.     

A unified framework for the restoration of Southeast Asian mangroves—bridging ecology, society and economics

The effect of intensive human intervention, poor socio-economic conditions and little knowledge on mangrove ecology pose enormous challenges for mangrove restoration in Southeast Asia. We present a framework for tropical mangrove restoration. Our proposed restoration framework addresses the ecology, economy and social issues simultaneously by considering the causes of mangrove degradation. We provide a step by step guideline for its restoration. We argue that although, ecological issues are of prime importance, economic and social issues must be considered in the restoration plan in order for it to be successful. Since mangrove ecology is not adequately studied in this region, local ecological knowledge can be used to fill the baseline information gaps. Unwanted human disturbance can be minimized by encouraging community participation. This can be ensured and sustained by facilitating the livelihood of the coastal community. We translated the restoration paradigm into a readily available practical guideline for the executors of the plans. We provide an example of mangrove restoration project that is closely related to our proposed framework. We are optimistic that this framework has the potential for universal application with necessary adjustments.     

Ring test for the determination of N-terminal valine adducts of styrene 7,8-oxide with haemoglobin by the modified Edman degradation technique

A ring-test was organised between three laboratories using different versions of the modified Edman degradation technique for the gas chromatographic-mass spectrometric determination of N-terminal valine adducts of styrene 7,8-oxide. The analyses were performed on a sample of human haemoglobin reacted in vitro with styrene 7,8-oxide and on a set of five haemoglobin samples from mice dosed by i.p. injection of styrene. Strong correlations between the haemoglobin adduct determinations of the different laboratories were observed. However, covariance analysis revealed different slopes for the dose-response curves, indicating differences for the calibration of the reference globin or reference peptide.     

Evaluation of CV2025 ω-transaminase for the bioconversion of lignin breakdown products into value-added chemicals: synthesis of vanillylamine from vanillin

Abstract

Lignin is an essential component of the cell wall of various plants and represents an abundant and renewable natural resource. Both thermo-chemical and biological pre-treatment can be applied to break down the phenylpropanoid polymer subunits present in lignin. These liberate a range of phenolic compounds which represent potential substrates for bioconversion by ω-transaminases. In this work, the CV2025 ω-transaminase (ω-TAm) from Chromobacterium violaceum DSM30191, heterologously expressed in E. coli, was explored for selective amination of lignin breakdown intermediates into value-added products. Eight potential ω-TAm substrates were initially screened using (S)-α-methylbenzylamine (MBA) as the amino donor. Vanillin was identified as the best potential substrate which is converted into vanillylamine; an intermediate in the preparation of pelargonic acid vanillylamide used as a hyperemia inducing active substance in wound dressings. At low vanillin and MBA concentrations (< 10 mM) and with an excess of the amine donor (1:4 mol/mol) 100% w/w conversion of vanillin into vanillylamine was observed within 25 min. At vanillin concentrations above 10 mM, substrate inhibition was observed decreasing the rate and yield of the bioconversion. High concentrations of the reaction product (vanillylamine) and by-product (acetophenone) also limited the conversion due to increased backward reaction rate and inhibition. Vanillylamine synthesis could be carried out by both whole cell and clarified lysate forms of the CV2025 ω-TAm while fed-batch bioconversions (feeding low concentrations of both vanillin and MBA) could help overcome substrate inhibition and double the final product concentrations obtained. These results demonstrate the potential for bioconversion of lignin breakdown products into value-added chemicals but illustrate the need for enzymes with improved substrate range and implementation of techniques to overcome product inhibition and equilibrium constraints.     

Protein quality control and regulated proteolysis in the genome‐reduced organism Mycoplasma pneumoniae

Protein degradation is a crucial cellular process in all‐living systems. Here, using Mycoplasma pneumoniae as a model organism, we defined the minimal protein degradation machinery required to maintain proteome homeostasis. Then, we conditionally depleted the two essential ATP‐dependent proteases. Whereas depletion of Lon results in increased protein aggregation and decreased heat tolerance, FtsH depletion induces cell membrane damage, suggesting a role in quality control of membrane proteins. An integrative comparative study combining shotgun proteomics and RNA‐seq revealed 62 and 34 candidate substrates, respectively. Cellular localization of substrates and epistasis studies supports separate functions for Lon and FtsH. Protein half‐life measurements also suggest a role for Lon‐modulated protein decay. Lon plays a key role in protein quality control, degrading misfolded proteins and those not assembled into functional complexes. We propose that regulating complex assembly and degradation of isolated proteins is a mechanism that coordinates important cellular processes like cell division. Finally, by considering the entire set of proteases and chaperones, we provide a fully integrated view of how a minimal cell regulates protein folding and degradation.     

Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition

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An extracellular haem-protein from Coriolus versicolor

A haem-containing protein has been isolated from the growth medium of Coriolus versicolor, a wood-rotting basidiomycete. The polypeptide was identified as a ‘peroxidase-type’ haem protein of MW 53 700, which appeared to be a glycoprotein and had a protoporphyrin IX prosthetic group with a mid-point redox potential of ?121 mV. It also bound carbon monoxide suggesting it may act as an oxidase, and liberated hydroxyl radicals from hydrogen peroxide as measured by its ability to release ethylene from methional.     

Phycological expertise in geological applications

Our knowledge about fossil algae has been biased for a long time towards groups with calcified tissues such as dasyclads and crustose rhodophytes. This picture has recently begun to change owing to the growing number of discoveries of silicified microbial fossils and fossil microbial endoliths. There is good evidence that both groups contain a large proportion of photosynthetic organisms, particularly algae. Silicified microbial fossils are best known from the Precambrian strata, while microbial endoliths, which apparently evolved during middle to late Precambrian times are common throughout the Phanerozoic including the present. Because of the small size of these fossils, it is possible to study and morphometrically evaluate entire populations rather than individual specimens or body fragments. Thus, we are able to approach fossil taxa using largely biological rather than strictly paleontological criteria and to apply interpretations and reconstructions of biological species. Phycologists entering this field can contribute to the interpretation of such fossils by applying comparisons with modern algae, their life cycles, cellular organization, and cell division patterns. However, they have to learn to deal with post-mortem degradation and diagenetic changes, and to recognize algal remains from mineral features that surround and often obliterate the fossils. This work is often similar to that of a detective or coroner where the use of intuition and imagination is just as dangerous as it is necessary. Detection of microfossils between and within single carbonate grains in otherwise unfossiliferous rocks can provide valuable information for applied geology including petroleum exploration.     

Enzymatic degradation of alginate by marine fungi

A total of 72 pre-selected strains of 19 species of marine fungi were tested for their ability to decompose sodium alginate, calcium alginate or freshly prepared calcium alginate gel. Active alginate decomposition was evident in 18 strains (25% of total tested). These belong to only three different species: Asteromyces cruciatus, Corollospora intermedia, and Dendryphiella salina. In broth culture, decomposition of sodium alginate by the two deuteromycetes was followed by gravimetric, electrometric, viscometric, photometric and chromatographic methods in order to characterize the alginase enzyme system and its degradation products. The alginase enzyme complex consisted of at least two different enzyme components: the already known alginate lyase (eliminase) and a new endo-alginate hydrolase. In summary, a model is presented on the alginase-mediated structural and molecular decomposition of sodium alginate by marine fungi.