Misconceptions About the Evolution of Complexity

Despite data and theory from comparative anatomy, embryology, molecular biology, genomics, and evolutionary developmental biology, antievolutionists continue to present the eye as an example of a structure too complex to have evolved. They stress what we have yet to explain about the development and evolution of eyes and present incomplete information as evidence that evolution is a “theory in crisis.” An examination of the evidence, however, particularly evidence that has accumulated in the twentieth and twenty-first centuries, refutes antievolutionists’ claims. The distribution of eyes in extant organisms, combined with what we now know about the control of eye development across diverse groups of organisms, provides significant evidence for the evolution of all major components of the eye, from molecular to morphological, and provides an excellent test of predictions based on common ancestry.     

Simple example of structure versus property relationship applied to a reduced-friction biosystem, a quite personal opinion

Structure versus property (small-scale) relationship enters when something interesting is going to happen in a biosystem. This special-type "happening" is actually appearing to be manifested at both micro- and mesoscopic levels of always productive soft-matter organization under dynamic response, especially the one characteristic of the articular cartilage--an efficient, designed-by-nature multi-membrane, and virtually, with-ion-channels equipped, absorber and load relaxor.     

The effects of fire, local environment and time on ant assemblages in fens and forests

We investigated the effects of the abiotic environment, plant community composition and disturbance by fire on ant assemblages in two distinct habitat types in the Siskiyou Mountains in northern California and southern Oregon, USA. Sampling over 2 years in burned and unburned Darlingtonia fens and their adjacent upland forests, we found that the effects of disturbance by fire depended on habitat type. In forests, fire intensity predicted richness in ant assemblages in both years after the fire, and plant community composition predicted richness 2 years after the fire. No factors were associated with richness in the species‐poor fen ant assemblages. Species‐specific responses to both habitat type and disturbance by fire were idiosyncratic. Assemblage composition depended on habitat type, but not disturbance by fire, and the composition of each assemblage between years was more dissimilar in burned than unburned sites.     

Effects of habitat complexity on forest beetle diversity: do functional groups respond consistently?

We examined the responses of a beetle assemblage to habitat complexity differences within a single habitat type, Sydney sandstone ridgetop woodland, using pitfall and flight‐intercept trapping. Six habitat characters (tree canopy cover, shrub canopy cover, ground herb cover, soil moisture, amount of leaf litter, and amount of logs, rocks and debris) were scored between 0 and 3 using ordinal scales to reflect habitat complexity at survey sites. Pitfall trapped beetles were more species rich and of different composition in high complexity sites, compared with low complexity sites. Species from the Staphylinidae (Aleocharinae sp. 1 and sp. 2), Carabidae (Pamborus alternans Latreille), Corticariidae (Cartodere Thomson sp. 1) and Anobiidae (Mysticephala Ford sp. 1) were most clearly responsible for the compositional differences, preferring high complexity habitat. Affinities between general functional groupings of pitfall‐trapped beetles and habitat variables were not clear at a low taxonomic resolution (family level). The composition and species richness of flight‐intercept‐trapped beetles were similar in high and low complexity sites. Our study demonstrates that discrete responses of the various functional groups of beetles are strongly associated with their feeding habits, indicated by differing habitat components from within overall composite habitat complexity measures. Although habitat preferences by beetle species may often reflect their foraging habits, clarification of the causal mechanisms underpinning the relationships between habitat complexity and beetles are critical for the development of general principles linking habitat, functional roles and diversity.     

Scaling up keystone effects from simple to complex ecological networks

Predicting the consequences of species loss requires extending our traditional understanding of simpler dynamic systems of few interacting species to the more complex ecological networks found in natural ecosystems. Especially important is the scaling up of our limited understanding of how and under what conditions loss of ‘keystone’ species causes large declines of many other species. Here we explore how these keystone effects vary among simulations progressively scaled up from simple to more complex systems. Simpler simulations of four to seven interacting species suggest that species up to four links away can strongly alter keystone effects and make the consequences of keystone loss potentially indeterminate in more realistically complex communities. Instead of indeterminacy, we find that more complex networks of up to 32 species generally buffer distant influences such that variation in keystone effects is well predicted by surprisingly local ‘top‐down’, ‘bottom‐up’, and ‘horizontal‘ constraints acting within two links of the keystone subsystem. These results demonstrate that: (1) strong suppression of the competitive dominant by the keystone may only weakly affect subordinate competitors; (2) the community context of the target species determines whether strong keystone effects are realized; (3) simple, measurable, and local attributes of complex communities may explain much of the empirically observed variation in keystone effects; and (4) increasing network complexity per se does not inherently make the prediction of strong keystone effects more complicated.     

Wasp community responses to habitat complexity in Sydney sandstone forests

Abstract Habitat structure and complexity affect the diversity and composition of fauna in a number of systems. We investigated patterns in wasp species richness, abundance and composition and also their associations with habitat complexity in Sydney sandstone forests, Australia. Pitfall and flight‐intercept traps collected dissimilar wasp assemblages. High complexity habitats supported greater abundance and species richness and a dissimilar composition of pitfall‐trapped wasps to low complexity habitats. Soil moisture, tree canopy cover, ground herb cover and shrub canopy cover all had significant positive associations with the species richness of pitfall‐trapped wasps. Although the five most abundant families of wasps we trapped are endoparasitoids of other arthropods, they showed a variety of preferences for habitat variables. The mechanisms driving associations between habitat complexity and patterns in wasp communities may also provide a basis for understanding factors influencing the regulation of arthropod assemblages by wasps in agricultural and natural landscapes.     

A functional morphospace for the skull of labrid fishes: patterns of diversity in a complex biomechanical system

The Labridae (including wrasses, the Odacidae and the Scaridae) is a species‐rich group of perciform fishes whose members are prominent inhabitants of warm‐temperate and tropical reefs worldwide. We analyse functionally relevant morphometrics for the feeding apparatus of 130 labrid species found on the Great Barrier Reef and use these data to explore the morphological and mechanical basis of trophic diversity found in this assemblage. Morphological measurements were made that characterize the functional and mechanical properties of the oral jaws that are used in prey capture and handling, the hyoid apparatus that is used in expanding the buccal cavity during suction feeding, and the pharyngeal jaw apparatus that is used in breaking through the defences of shelled prey, winnowing edible matter from sand and other debris, and pulverizing the algae, detritus and rock mixture eaten by scarids (parrotfishes). A Principal Components Analysis on the correlation matrix of a reduced set of ten variables revealed complete separation of scarids from wrasses on the basis of the former having a small mouth with limited jaw protrusion, high mechanical advantage in jaw closing, and a small sternohyoideus muscle and high kinematic transmission in the hyoid four‐bar linkage. Some scarids also exhibit a novel four‐bar linkage conformation in the oral jaw apparatus. Within wrasses a striking lack of strong associations was found among the mechanical elements of the feeding apparatus. These weak associations resulted in a highly diverse system in which functional properties occur in many different combinations and reflect variation in feeding ecology. Among putatively monophyletic groups of labrids, the cheilines showed the highest functional diversity and scarids were moderately diverse, in spite of their reputation for being trophically monomorphic and specialized. We hypothesize that the functional and ecological diversity of labrids is due in part to a history of decoupled evolution of major components of the feeding system (i.e. oral jaws, hyoid and pharyngeal jaw apparatus) as well as among the muscular and skeletal elements of each component. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 82 , 1–25.     

青藏高原白腰雪雀鸣声结构的复杂性

本文以SAS Lab鸟类声谱分析软件对采自青藏高原黑马河、玛多与花石峡、沱沱河的白腰雪雀不同地方种群的鸣叫与鸣唱的复杂性进行了分析 ,发现白腰雪雀的鸣叫相对变化率随着采样量的增加由 0 5 2 2迅速降低到 0 1 2 7和 0 1 1 9,表明其鸣叫声组成中音节类型较少。同时发现其声谱图结构比较简单 ,表现出高度的音节重复并多有谐波的现象。鸣唱结构相对复杂 ,不同鸣唱音节数随鸣唱曲目的增加 ,开始有明显的增加 ,当鸣唱曲目增加到一定值时 ,不同音节数的增加趋于平缓 ,几乎保持稳定 ;野外未发现任何相同的鸣唱型 ,但在不同鸣唱型之间具有不同程度的音节共享现象。依据雷富民等 (2 0 0 3)对鸟类鸣唱多样性和复杂性的评述 ,白腰雪雀鸣唱的结构模式符合“多音节序列不稳定变化型” ,其鸣唱曲目中音节的转换形式为“序列鸣唱”。然而 ,鸣唱模式中音节类型的有限性和鸣唱型的高度多样化表明 :白腰雪雀鸣唱的复杂性不仅体现在鸣唱型内较丰富的音节组成 ,而且更重要的还在于不同鸣唱型间具有多变的音节序列组合形式     

Coping with Complexity and Organizational Interests in Natural Resource Management

To cope with the daunting challenges posed by system complexity while maximizing their organizational interests, resource management institutions must implement strategies aimed at reducing some of the particular dimensions of complexity. Virtually all of the recent initiatives to improve resource management—ecosystem management, adaptive management, stakeholder negotiation, disturbance prevention, multiple mandates for resource management agencies, resource homogenization, restoration ecology, the creation of protected areas, the restoration of local-user rights, and algorithmic resource exploitation rules—are vulnerable to inappropriate interest-driven simplifications, many of which result from patterns of perverse learning. A research agenda designed to identify better means of coping with complexity and the effects of organizational interests could help to improve resource and environmental management. Received 4 October 2000; accepted 15 June 2001.