Genome organization of Magnaporthe grisea: integration of genetic maps, clustering of transposable elements and identification of genome duplications and rearrangements

 A high-density genetic map of the rice blast fungus Magnaporthe grisea (Guy11×2539) was constructed by adding 87 cosmid-derived RFLP markers to previously generated maps. The new map consists of 203 markers representing 132 independently segregating loci and spans approximately 900 cM with an average resolution of 4.5 cM. Mapping of 33 cosmid probes from the genetic map generated by Sweigard et al. has allowed the integration of two M. grisea maps. The integrated map showed that the linear order of markers along all seven chromosomes in both maps is in good agreement. Thirty of eighty seven markers were derived from cosmid clones that contained the retrotransposon MAGGY (M. grisea gypsy element). Mapping of single-copy DNA sequences associated with the MAGGY cosmids indicated that MAGGY elements are scattered throughout the fungal genome. In eight cases, the probes associated with MAGGY elements showed abnormal segregation patterns. This suggests that MAGGY may be involved in genomic rearrangements. Two RFLP probes linked to MAGGY elements, and another flanking other repetitive DNA elements, identified sequences that were duplicated in the Guy11 genome. Most of the MAGGY cosmids also contained other classes of repetitive DNA suggesting that repetitive DNA sequences tend to cluster in the M. grisea genome. Received: 17 February 1997 / Accepted: 21 February 1997     

Population Structure of Magnaporthe grisea from North-western Himalayas and its Implications for Blast Resistance Breeding of Rice

Neutral and pathogenicity markers were used to analyse the population structure of Magnaporthe grisea rice isolates from the north‐western Himalayan region of India. Random amplified polymorphic DNA (RAPD)‐based DNA fingerprinting of 48 rice isolates of M. grisea with five primers (OPA‐04, OPA‐10, OPA‐13, OPJ‐06 and OPJ‐19) showed a total of 65 RAPD bands, of which 54 were polymorphic. Cluster analysis of 48 rice isolates of M. grisea on the basis of these 65 RAPD bands revealed the presence of high genotypic diversity and continuous DNA fingerprint variation in the pathogen population. No correlation was observed between RAPD patterns and virulence characteristics of the pathogen. The observed population structure contrasted with presumed clonal reproductive behaviour of the pathogen and indicated the possibility of ongoing genetic recombination in the pathogen population. Analysis of the virulence organization of five RAPD groups (RG1–RG5) using 20 rice genotypes comprising at least 15 resistance genes revealed that no combination of resistance genes would confer resistance against all RAPD fingerprint groups present in the M. grisea rice population. The possible implications of the observed population structure of M. grisea for blast resistance breeding have been discussed.     

Inheritance of dsRNAs in the rice blast fungus, Magnaporthe grisea

The 1.6 and 1.8 kbp dsRNAs have been found in the rice blast fungus, Magnaporthe grisea strain MG01. These dsRNA molecules are located in cytoplasm of the fungal cells and maintained stably during vegetative growth. Three crosses between dsRNA free and dsRNA containing strains including a parental cross, sib-mating and back cross were made to follow the inheritance of dsRNAs during sexual reproduction. Approximately 10% of ascospore progenies (11 out of 105) contained dsRNAs from all three crosses. These data indicate that dsRNAs of M. grisea are inherited at a low frequency and not in a Mendelian fashion.     

稻瘟病菌微波诱发突变体的分析*

通过诱变获得突变体是研究稻瘟病菌变异机制的基础。本文用微波炉对稻瘟病菌分生孢子进行低强度短时间处理获得了一批形态发育和致病性突变体,并对它们进行了分析。突变体1-40-271菌落呈白色,产孢与萌发均正常,但萌发后即便在人工疏水表面上也不能形成附着胞,且丧失了致病性;突变体2-20-6菌落呈黄色,孢子萌发率为1%,萌发的孢子其附着胞形成率仅为0.01%,致病性减弱;突变体2-30-3菌落呈黄色,形成的附着胞大部分不正常,但致病性正常。Rep-PCR指纹分析发现,突变体2-20-6和2-30-3比其相应野生型少1条带,而突变体1-40-271与其野生型比较没有变化,说明微波可能造成稻瘟病菌基因组DNA缺失或点突变而发生变异。继代分析表明微波处理获得的稻瘟病菌形态和致病性突变体是稳定的。     

The Supernatant of a Conidial Suspension of Magnaporthe oryzae Contains a Factor that Promotes the Infection of Rice Plants

Many factors produced by the pathogen Magnaporthe oryzae enhance its ability to infect rice. We found a novel infection-promoting activity in the supernatant of a conidia suspension (SCS) of M . oryzae . The addition of SCS promoted the invasion of excised rice leaf sheaths by infectious hyphae. The activity was heat-stable and was found in SCSs from five virulent and three avirulent isolates of M . oryzae on the rice cv. Nipponbare ( Pia ). The effect was exclusively detected in compatible interactions. The infection of rice plants by non-rice blast fungi was not enhanced by SCS. These results suggest that SCS includes a heat-stable factor(s) that promotes M . oryzae infection during compatible interactions.     

Rice resistance to blast caused by leaf surface moistening prior to inoculation

Effect of water droplets placed onto rice (Oryza sativa L.) leaves before inoculation with blast fungus Magnaporthe grisea (Hebert) Barr on disease severity and superoxide radical generation by the leaves was investigated. The leaves were inoculated by placement of spore suspension droplets. One day before, droplets of distilled water were placed to the same sites as an inoculum. It was found, that such a pretreatment decreased frequency of susceptible-type lesions by 2 to 2.5 times and increased that of symptomless outcome by 1.5 times in comparison with the nontreated control. Besides, the pretreatment enhanced superoxide radical generation in diffusates of healthy leaves of susceptible cultivar and in diffusates of infected leaves of resistant cultivar one day post inoculation. It is suggested that water contacting with the leaf surface for a rather long time washes out from its cells compounds possessing properties of plant endogenous elicitors. The latter induce superoxide radical formation by plants and, as a consequence, their disease resistance. This may be interpreted as plant adaptation to high humidity, which usually favors infections.     

稻瘟病菌群体遗传结构的研究进展

稻梨孢引起的稻瘟病是世界水稻生产的最重要病害,严重影响水稻的产量和米质。文中综述了分子标记技术在稻瘟病菌群体遗传结构研究上的应用,分析了病原菌遗传宗谱的特点及其与致病谱的关系,探讨了导致稻瘟病菌群体遗传结构发生变化的相关因素。     

稻瘟病抗病基因Pi15的精细定位

稻瘟病抗病基因Pi15曾被作者鉴定为与已知抗病基因Pii具有连锁关系,但是,Pii基因究竟位于染色体6还是9上存在争议。为了确定Pi15基因的染色体位置,利用分子标记在由15个抗病个体和141个感病个体组成的F_2群体中,通过混合群体分离法(BSA)与隐性群体分析法(RCA)相结合的手段,对目标基因进行了连锁分析。首先,从染色体6和9分别选择10个微卫星标记进行了分析,结果表明,只有位于染色体9的RM316与目标基因连锁,重组率为(19.1±3.7)％。为了进一步确定这种连锁关系,从染色体9选择了4个序列标定位点(STS)标记进行分析,结果表明,只有G103与目标基因连锁,重组率为(5.7±2.1)％。为了获得与目标基因更加紧密连锁的分子标记,对目标基囚进行了RAPD分析。在筛选、分析了1000个随机引物之后,从中获得了3个目标基因紧密连锁的分子标记BAPi15_(486)、BAPi15_(782)、BAPi15_(844)。它们与目标基因的重组率分别为0.35％、0.35％和1.1％。这些紧密连锁的分子标记可作为分子标记辅助基因聚合和克隆的出发点。     

稻瘟菌侵染诱导水稻凝集素基因的表达

利用mRNA差异显示技术（DDRT-PCR）,从非亲和性稻瘟菌生理小种131侵染的水稻品种爱知旭（Oryza sati-vaL.cv.Aichi-asahi)叶片中分离了8个诱导差异表达的cDNA片段,对这8个差示片段进行了回收,重扩增和克隆,以其中一个长度为321碱基并与甘露糖结合水稻凝集素和水稻盐诱导蛋白基因高度同源的差示片段为探针。筛选水稻非亲和性cDNA文库,获得12个阳性克隆。序列测定和数据库查询表明该基因的cDNA与水稻凝集素基因的cDNA及盐诱导蛋白基因的cDNA核苷酸同源笥高达96%。推定的氨基酸序列与甘露糖结合水稻凝集素的氨基酸序列一致。与水稻盐诱导蛋白仅相差2个氨基酸。Southern杂交显示该基因在水稻基因组中有两个同源拷贝数。Northern杂交表明非亲和性稻瘟菌侵染可强烈诱导该基因表达。因此推则该基因参与了水稻对稻瘟菌侵染的防御反应。