张掖国家湿地公园优势鸟类种群生态位研究

鸟类时空格局影响下鸟类种群生态位的变化是认识鸟类环境适应机制的理论基础。在张掖国家湿地公园保育区,采用样带法研究了冬春季节5种优势鸟类种群生态位宽度和生态位重叠的时间异质性。结果表明:随着月份的更替,5种优势鸟类种群的生态位宽度呈现出先增大后减小的变化趋势,赤麻鸭(Tadornaferruginea)、绿头鸭(Anasplatyrhynchos)、麻雀(Passer montanus)、白骨顶鸡(Fulicaatra)的最高值出现在1月分别为1.601、1.415、1.627、1.771,大白鹭(Ardea alba)的最高值出现在3月为0.556;不同月份间鸟类优势种群生态位重叠存在差异,3月、11月生态位的重叠值最大,1月份最小;优势鸟类种群的生态位宽度和重叠在时间尺度上表现出"此消彼长"的关系。湿地公园时间尺度上的鸟类生态位宽度和重叠的差异与湿地食物资源及隐蔽条件、鸟类群体迁徙规律、鸟类种间的竞争密切相关,反应了湿地鸟类适应生境变化的可塑性机制。     

贵州赤水桫椤国家级自然保护区鸟兽多样性红外相机初步监测

红外相机监测是了解野生动物多样性和威胁因素的重要手段。本研究采用网格法和分层抽样调查法, 在贵州赤水桫椤国家级自然保护区内选取20个监测位点布设红外相机, 对区内鸟兽物种多样性进行监测。2015年8月至2017年8月, 红外相机累计工作6,370个工作日, 共拍摄45,953张照片, 独立有效照片1,936张。准确鉴定出兽类4目8科19种, 鸟类4目11科28种, 其中, 国家II级重点保护野生动物7种。相对丰富度指数(RAI)排前五位的兽类依次是毛冠鹿(Elaphodus cephalophus)、鼬獾(Melogale moschata)、藏酋猴(Macaca thibetana)、小麂(Muntiacus reevesi)和野猪(Sus scrofa); 鸟类依次是紫啸鸫(Myophonus caeruleus)、红腹角雉(Tragopan temminckii)、灰胸竹鸡(Bambusicola thoracicus)、黑喉噪鹛(Garrulax chinensis)和棕颈钩嘴鹛(Pomatorhinus ruficollis)。物种积累曲线结果表明, 兽类稀疏化曲线在300天后趋于稳定, 表明监测取样已较充分, 而鸟类监测物种数随时间积累依旧保持增长趋势。     

Effects of experimental watering but not warming on herbivory vary across a gradient of precipitation

Climate change can affect biotic interactions, and the impacts of climate on biotic interactions may vary across climate gradients. Climate affects biotic interactions through multiple drivers, although few studies have investigated multiple climate drivers in experiments. We examined the effects of experimental watering, warming, and predator access on leaf water content and herbivory rates of woolly bear caterpillars (Arctia virginalis) on a native perennial plant, pacific silverweed (Argentina anserina ssp. pacifica), at two sites across a gradient of precipitation in coastal California. Based on theory, we predicted that watering should increase herbivory at the drier end of the gradient, predation should decrease herbivory, and watering and warming should have positive interacting effects on herbivory. Consistent with our predictions, we found that watering only increased herbivory under drier conditions. However, watering increased leaf water content at both wetter and drier sites. Warming increased herbivory irrespective of local climate and did not interact with watering. Predation did not affect herbivory rates. Given predictions that the study locales will become warmer and drier with climate change, our results suggest that the effects of future warming and drying on herbivory may counteract each other in drier regions of the range of Argentina anserina. Our findings suggest a useful role for range‐limit theory and the stress‐gradient hypothesis in predicting climate change effects on herbivory across stress gradients. Specifically, if climate change decreases stress, herbivory may increase, and vice versa for increasing stress. In addition, our work supports previous suggestions that multiple climate drivers are likely to have dampening effects on biotic interactions due to effects in different directions, though this is context‐dependent.     

武夷山国家公园及其周边鱼类多样性

武夷山国家公园是中国正式设立的第一批国家公园之一, 其所处的武夷山脉在动物地理区划上是东洋区南亚亚区华南小区、东洋区东亚亚区华东小区的分界线。为查明武夷山国家公园及其周边的鱼类区系和多样性现状, 本研究在梳理历史研究资料的基础上, 对调查区域内的崇阳溪、麻阳溪、九曲溪、北溪和铅山河5条河流进行了实地调查, 从物种多样性和功能多样性两个层面对武夷山国家公园及其周边地区鱼类多样性水平进行了分析。结合历史数据, 武夷山国家公园及其周边地区分布的土著鱼类为113种, 隶属于5目17科61属, 其中以鲤形目鱼类为主, 共82种, 占物种总数的72.6%, 其次为鲈形目, 共16种, 占总数的14.2%。受威胁鱼类3种, 包括2种国家II级野生水生保护动物, 即胭脂鱼(Myxocyprinus asiaticus)和花鳗鲡(Anguilla marmorata)。武夷山国家公园的第一优势种为拟腹吸鳅(Pseudogastromyzon fasciatus), 与其周边地区以点纹银鮈(Squalidus wolterstorffi)为第一优势种不同。多样性分析结果显示武夷山国家公园的鱼类物种丰富度指数、多样性指数和均匀度指数均低于周边区域。通过比较调查区域内5条河流的鱼类多样性, 麻阳溪鱼类多样性显著高于其他河流, 铅山河的多样性显著低于其他河流。位于国家公园内的九曲溪鱼类多样性比周边地区的崇阳溪要低。鱼类功能多样性结果显示, 武夷山国家公园的功能丰富度指数显著低于周边地区, 功能离散度和功能均匀度均高于周边地区; 在河流方面, 北溪的功能丰富度显著高于其他河流, 崇阳溪的功能均匀度较高, 九曲溪的功能离散度显著高于其他河流。综合鱼类多样性分析结果, 武夷山国家公园鱼类多样性低主要是自然生境异质性低和人为活动共同作用形成, 而周边地区的河流受到捕捞、水利设施、水质污染等因素的影响。这些干扰改变了鱼类的群落结构, 使得鱼类多样性降低。因此应该加强对该区域的鱼类多样性保护工作, 未来还应进一步开展针对公园内鱼类多样性的调查工作。     

Post-translational modifications in MeHg-induced neurotoxicity

Mercury (Hg) exposure remains a major public health concern due to its widespread distribution in the environment. Organic mercurials, such as MeHg, have been extensively investigated especially because of their congenital effects. In this context, studies on the molecular mechanism of MeHg-induced neurotoxicity are pivotal to the understanding of its toxic effects and the development of preventive measures. Post-translational modifications (PTMs) of proteins, such as phosphorylation, ubiquitination, and acetylation are essential for the proper function of proteins and play important roles in the regulation of cellular homeostasis. The rapid and transient nature of many PTMs allows efficient signal transduction in response to stress. This review summarizes the current knowledge of PTMs in MeHg-induced neurotoxicity, including the most commonly PTMs, as well as PTMs induced by oxidative stress and PTMs of antioxidant proteins. Though PTMs represent an important molecular mechanism for maintaining cellular homeostasis and are involved in the neurotoxic effects of MeHg, we are far from understanding the complete picture on their role, and further research is warranted to increase our knowledge of PTMs in MeHg-induced neurotoxicity.     

Assembly and Maturation of the Bacteriophage Lambda Procapsid: gpC Is the Viral Protease

Viral capsids are robust structures designed to protect the genome from environmental insults and deliver it to the host cell. The developmental pathway for complex double-stranded DNA viruses is generally conserved in the prokaryotic and eukaryotic groups and includes a genome packaging step where viral DNA is inserted into a pre-formed procapsid shell. The procapsids self-assemble from monomeric precursors to afford a mature icosahedron that contains a single “portal” structure at a unique vertex; the portal serves as the hole through which DNA enters the procapsid during particle assembly and exits during infection. Bacteriophage λ has served as an ideal model system to study the development of the large double-stranded DNA viruses. Within this context, the λ procapsid assembly pathway has been reported to be uniquely complex involving protein cross-linking and proteolytic maturation events. In this work, we identify and characterize the protease responsible for λ procapsid maturation and present a structural model for a procapsid-bound protease dimer. The procapsid protease possesses autoproteolytic activity, it is required for degradation of the internal “scaffold” protein required for procapsid self-assembly, and it is responsible for proteolysis of the portal complex. Our data demonstrate that these proteolytic maturation events are not required for procapsid assembly or for DNA packaging into the structure, but that proteolysis is essential to late steps in particle assembly and/or in subsequent infection of a host cell. The data suggest that the λ-like proteases and the herpesvirus-like proteases define two distinct viral protease folds that exhibit little sequence or structural homology but that provide identical functions in virus development. The data further indicate that procapsid assembly and maturation are strongly conserved in the prokaryotic and eukaryotic virus groups.     

Secretion of proteoglycans by chondrocytes. Influence of colchicine, cytochalasin B, and beta-D-xyloside.

Chondrocytes obtained from epiphyseal cartilage of fetal guinea pigs or ear cartilage of young rabbits were cultured in monolayer. The influence of colchicine, cytochalasin B, and p-nitrophenyl-β-d-xylopyranoside on secretion of proteoglycans was investigated. Radioactive sulfate was used as a precursor. As observed previously in other systems, β-d-xylosides initiated the synthesis of free chondroitin sulfate chains, competing with the endogenous proteoglycan core protein acceptor. The molecular weights of the chondroitin sulfate chains synthesized both on the xyloside and on the core-protein acceptor in maximally stimulated cells were similar and significantly lower than in proteoglycans synthesized in the absence of xyloside. The size of the chondroitin sulfate chains synthesized on the xyloside was inversely related to the concentration of this compound. This finding suggests that the chain length is dependent on the ratio between available acceptor and chain-lengthening enzymes or precursors. Cytochalasin B, a microfilament-modifying agent, inhibited proteoglycan synthesis, without any effect on secretion. Cells treated with cytochalasin B could be stimulated with β-d-xyloside to synthesize free chondroitin sulfate chains to the same relative degree as cells with intact microfilaments. Colchicine, an antimicrotubular agent, partially inhibited synthesis and secretion of proteoglycan. However, cells treated with colchicine could be stimulated with β-d-xyloside to synthesize and secrete free chondroitin sulfate chains to about the same relative degree as cells with intact microtubules. The data suggest that microtubules may have a facilitatory rather than an obligatory role in the secretion of proteoglycans and that at least part of the effect of colchicine is located at or after the site of glycosaminoglycan synthesis.     

Towards Precision Medicine: Advances in Computational Approaches for the Analysis of Human Variants

Variations and similarities in our individual genomes are part of our history, our heritage, and our identity. Some human genomic variants are associated with common traits such as hair and eye color, while others are associated with susceptibility to disease or response to drug treatment. Identifying the human variations producing clinically relevant phenotypic changes is critical for providing accurate and personalized diagnosis, prognosis, and treatment for diseases. Furthermore, a better understanding of the molecular underpinning of disease can lead to development of new drug targets for precision medicine. Several resources have been designed for collecting and storing human genomic variations in highly structured, easily accessible databases. Unfortunately, a vast amount of information about these genetic variants and their functional and phenotypic associations is currently buried in the literature, only accessible by manual curation or sophisticated text text-mining technology to extract the relevant information. In addition, the low cost of sequencing technologies coupled with increasing computational power has enabled the development of numerous computational methodologies to predict the pathogenicity of human variants. This review provides a detailed comparison of current human variant resources, including HGMD, OMIM, ClinVar, and UniProt/Swiss-Prot, followed by an overview of the computational methods and techniques used to leverage the available data to predict novel deleterious variants. We expect these resources and tools to become the foundation for understanding the molecular details of genomic variants leading to disease, which in turn will enable the promise of precision medicine.     

The relationship between the presence of ADHD and certain candidate gene polymorphisms in a Turkish sample

Due to the high heritability of attention-deficit hyperactivity disorder (ADHD), parents of children with ADHD appear to represent a good sample group for investigating the genetics of the disorder. The aim of this study was to investigate the association between ADHD and six polymorphisms in five candidate genes [5-HT2A (rs6311), NET1 (rs2242447), COMT (rs4818), NTF3 (rs6332), SNAP-25 (rs3746544) and (rs1051312)]. We included 228 parents of children diagnosed with ADHD and 109 healthy parents as the control group. The polymorphisms were genotyped using polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) assays and analyzed using the chi-square test and the multinomial logit model. SNAP-25 (rs3746544) polymorphism was associated with loading for ADHD, while 5-HT2A (rs6311) and NET1 (rs2242447) polymorphisms were associated with ADHD. On the other hand, there was no significant association between the SNAP-25 (rs1051312), NTF3 (rs6332), or COMT (rs4818) gene polymorphisms and ADHD.     

Microsatellite identification of ramet genotypes in a clonal plant with phalanx growth: The case of Cirsium rivulare (Asteraceae)

Cirsium rivulare is a perennial plant that forms patches consisting of ramets resulting from sexual reproduction by seeds and asexual propagation by rhizome fragmentation. We examined the relationship between the size of patches and genetic differentiation of ramets within and between patches. Ramet genotypes were identified using microsatellites. From among 216 ramets examined in the studied population, 123 had a unique genotype, while 93 were clonal, i.e., their genotype was present in at least two ramets. The frequency of ramets with clonal genotypes was 43% and the frequency of unique genotypes was 57%. Ramets with identical genotypes were dominant in small patches. Large patches consisted of ramets with both unique and clonal genotypes, usually with the predominance of the latter. A molecular variance analysis showed the highest level of variance between ramets and the lowest between patches. Additionally, 21.02% of the total variance was recorded between ramets and within patches. The size of patches was correlated with the number of clonal ramets and the number of unique ramets, but it was not correlated with the clonality index. This population of C. rivulare is currently in a phase of decline from 30 years of vegetation transformation, and there appears to have been an increase in sexual propagation based growth over clonal propagation based growth. Hence, a predominance of ramets with unique genotypes was observed. This can happen as a result of disintegration of large patches and formation of gaps between them. These gaps become convenient places for seed germination and the subsequent development of seedlings.