Producing and scrounging can have stabilizing effects at multiple levels of organization

This study shows, for the first time, that the evolution of a simple behavior, scrounging, at the individual level can have effects on populations, food chains, and community structure. In particular, the addition of scrounging in consumer populations can allow multiple consumers to coexist while exploiting a single prey. Also, scrounging in the top predator of a tritrophic food chain can stabilize interactions between the top predator, its prey, and its prey's prey. This occurs because the payoffs to scrounging for food in a population are negative frequency dependent, allowing scroungers to invade a population and to coexist with producers at a frequency which is density‐dependent. The presence of scroungers, who do not search for resources but simply use those found by others (producers) reduces the total amount of resource acquired by the group. As scrounging increases with group size, this leads to less resource acquired per individual as the group grows. Ultimately, this limits the size of the group, its impact on its prey, and its ability to outcompete other species. These effects can promote stability and thus increase species diversity. I will further suggest that prey may alter their spatial distribution such that scrounging will be profitable among their predators thus reducing predation rate on the prey.     

合成未来：从大肠杆菌的重构看合成生物学的发展

合成生物学（synthetic biology）是伴随着基因工程、系统生物学以及生物信息学的发展而出现的一个新的交叉学科。大肠杆菌（Escherichia coli）作为一种宿主在合成生物学的发展中功不可没。从某种意义上讲,合成生物学的每一次进展都离不开大肠杆菌。从大肠杆菌的角度出发,对合成生物学的发展进行深入分析,并提出了合成生物学在中圉发展的重点。     

思茅松毛虫肠道真菌分离鉴定及水解酶活性初步研究

肠道微生物在昆虫的食物消化、免疫防御中发挥重要作用,但目前对昆虫肠道真菌了解不多。本研究以重要林业害虫—思茅松毛虫Dendrolimu kikuchii Matsumura为材料,分离鉴定其幼虫中的肠道真菌。采用传统微生物分离纯培养的方法从思茅松毛虫4龄幼虫肠道样品中分离肠道真菌,运用ITS序列分析鉴定,并对其产酶活性初步研究。经同源序列比对分析,思茅松毛虫4龄幼虫肠道中共分离得到12株真菌,分别属于德巴利酵母属Debaryomyces sp.,拟盘多毛孢属Pestalotiopsis sp.,青霉属Penicillium sp.,弯担菌属Curvibasidium sp.。产酶活性研究表明8株菌产纤维素酶,9株菌产淀粉酶,7株菌产脂肪酶,2株菌产蛋白酶。DKF-8产淀粉酶能力最高,酶活力是60.907 U/mL。DKF-10产纤维素酶能力最高,酶活力是14.276 U/g,菌株DKF-6产蛋白酶活力是5.561 U/mL,菌株DKF-8产蛋白酶酶活力是2.918 U/mL。思茅松毛虫4龄幼虫肠道真菌物种丰富度较低。本实验为未来深入研究思茅松毛虫肠道微生物功能提供了菌株材料。     

Occurrence of planktonic blooms under environmental fluctuations and its possible control mechanism--mathematical models and experimental observations

Planktonic blooms and its control is an intriguing problem in ecology. To investigate the oscillatory successions of blooms, three simple phytoplankton-zooplankton systems are proposed. It is observed that if the uptake function is linear and the process of toxin liberation is instantaneous, the oscillatory nature of blooms is not observed. On the other hand, periodic planktonic blooms are observed when toxin liberation process follows discrete time variation. The bloom phenomena described by this mechanism can be controlled through toxin producing phytoplankton (TPP). Introducing environmental fluctuation in the system, a critical value of time delay in terms of correlation time of the fluctuation is worked out. We observed from our mathematical analysis, numerical simulation and field observation that TPP and control of the rapidity of environmental fluctuation are key factors for the termination of planktonic blooms.     

Recent advances in plasmid-based tools for establishing novel microbial chassis

A key challenge for domesticating alternative cultivable microorganisms with biotechnological potential lies in the development of innovative technologies. Within this framework, a myriad of genetic tools has flourished, allowing the design and manipulation of complex synthetic circuits and genomes to become the general rule in many laboratories rather than the exception. More recently, with the development of novel technologies such as DNA automated synthesis/sequencing and powerful computational tools, molecular biology has entered the synthetic biology era. In the beginning, most of these technologies were established in traditional microbial models (known as chassis in the synthetic biology framework) such as Escherichia coli and Saccharomyces cerevisiae, enabling fast advances in the field and the validation of fundamental proofs of concept. However, it soon became clear that these organisms, although extremely useful for prototyping many genetic tools, were not ideal for a wide range of biotechnological tasks due to intrinsic limitations in their molecular/physiological properties. Over the last decade, researchers have been facing the great challenge of shifting from these model systems to non-conventional chassis with endogenous capacities for dealing with specific tasks. The key to address these issues includes the generation of narrow and broad host plasmid-based molecular tools and the development of novel methods for engineering genomes through homologous recombination systems, CRISPR/Cas9 and other alternative methods. Here, we address the most recent advances in plasmid-based tools for the construction of novel cell factories, including a guide for helping with “build-your-own” microbial host.     

Molecular cloning of the delta-endotoxin gene of Bacillus thuringiensis var. israelensis

A transformant of Bacillus megaterium, VB131, was isolated which carries a 6.3-kb XbaI segment of the crystal toxin gene of Bacillus thuringiensis var. israelensis (BTI) cloned in a vector plasmid pBC16 to yield pVB131. The chimeric plasmid DNA from VB131 was introduced into a transformable Bacillus subtilis strain by competence transformation. Both the B. megaterium VB131 strain and the B. subtilis strain harboring the chimeric plasmid produced irregular, parasporal, phase-refractile, crystalline inclusions (Cry+) during sporulation. The sporulated cells as well as the isolated crystal inclusions of the pVB131-containing B. megaterium and B. subtilis strains were highly toxic to the larvae of Aedes aegypti. Also, the solubilized crystal protein preparation from VB131[pVB131] showed clear immuno cross-reaction with antiserum to the BTI crystal toxin. 32P-labeled pVB131 plasmid DNA showed specific hybridization with a 112-kb plasmid DNA of Cry+ strains of BTI, and no hybridization with other plasmid or chromosomal DNA of either Cry+ or Cry- variants. These results are in agreement with our previous findings (González and Carlton, 1984) that the 112-kb plasmid of BTI is associated with the production of the crystal toxin.