Mitochondrial tRNAGlu 14693G variant may modulate the phenotypic manifestation of deafness-associated 12S rRNA A1555G mutation in a Hah Chinese family

Mutations in mitochondrial 12S rRNA gene are one of the most important causes of aminoglycoside-induced and nonsyndromic hearing loss. Here we report the characterization of one Han Chinese pedigree with aminoglycoside-induced and nonsyndromic hearing loss.This Chinese family carrying the 12S rRNA A1555G mutation exhibited high penetrance and expressivity of hearing impairment. In particular, penetrances of hearing loss in this family pedigree were 43.8% and 25%, respectively, when aminoglycoside-induced heating loss was included or excluded. Mutational analysis of entire mitochondrial genomes in this family showed the homoplasmic A1555G mutation and a set of variants belonging to haplogroup Y2. Of these, the A14693G variant occurred at the extremely conserved nucleotide (conventional position 54) of the TψC-loop of tRNAGlu and was absent in 156 Chinese controls. Nucleotides at position 54 of tRNAs are often modified, thereby contributing to the structural formation and stabilization of functional tRNAs. Thus, the structural alteration of tRNA by the A14693G variant may lead to a failure in tRNA metabolism and impair mitochondrial protein synthesis, thereby worsening mitochondrial dysfunctions altered by the A1555G mutation. Therefore, the tRNAalu A14693G variant may have a potential modifier role in increasing the penetrance and expressivity of the deafness-associated AI555G mutation in this Chinese pedigree.     

Human land use, agriculture, pesticides and losses of imperiled species

Aim  Anthropogenic habitat loss is usually cited as the most important cause of recent species' extinctions. We ask whether species losses are in fact more closely related to habitat loss than to any other aspect of human activity such as use of agricultural pesticides, or human population density (which reflects urbanization).
Location  Canada.
Methods  We statistically compared areas in Canada where imperiled species currently occur, versus areas where they have been lost. Using multiple regressions, we relate the numbers of species that had suffered range reductions in an ecoregion to variables that represent present habitat loss, pesticide use and human population density.
Results  We find high losses of imperiled species in regions with high proportions of agricultural land cover. However, losses of imperiled species are significantly more strongly related to the proportion of the region treated with agricultural pesticides. The relationship between species losses and area treated with pesticides remains significant after controlling for area in agriculture.
Main conclusions  Our results are consistent with the hypothesis that agricultural pesticide use, or something strongly collinear with it (perhaps intensive agriculture more generally), has contributed significantly to the decline of imperiled species in Canada. Habitat conversion per se may be a less important cause of species declines than how that converted habitat is used.     

The river before damming: distribution and ecological notes on the endemic species <Emphasis Type="Italic">Echinogammarus cari</Emphasis> (Amphipoda: Gammaridae) in the Dobra River and its tributaries,Croatia

The endemic species Echinogammarus cari (Karaman 1931) is the only species of this genus present in the Black Sea drainage basin of Croatia. The species is known only from its type locality, the Bistrac spring. Since little is known about the distribution and ecology of this amphipod species, research was conducted to determine the extent of its distribution in the Dobra River and its tributaries, part of which will be flooded on the completion of a 52.5 m high dam in 2009. Sampling was conducted at 10 study sites in the drainage area of the sinking Gornja Dobra and at 19 study sites in the Gojačka Dobra, including measurement of physicochemical parameters. To examine microdistribution of this species, samples were collected on moss and on stony substrate. The species is confined to first 15 km of the Gojačka Dobra, its tributary streams Bistrica and Ribnjak, while it is absent in the drainage area of the Gornja Dobra. At all sites where it was recorded, it coexists with Gammarus fossarum, and its relative abundance was significantly higher on moss microhabitats, while G. fossarum was more abundant on a stony substrate. The downstream decrease in the relative abundance of E. cari could be related to the longitudinal decrease in conductivity and the increase of water temperature fluctuations. After the completion of the dam, 60% of the presently known distribution area of E. cari will be flooded. Consequently, the species is likely to become endangered.     

The role of microarthropods in terrestrial decomposition: a meta-analysis of 40 years of litterbag studies

Litterbags have been utilized in soil ecology for about 50 years. They are useful because they confine organic material and thus enable the study of decomposition dynamics (mass loss and/or nutrient loss through time, colonization by soil biota) in situ, i.e. under field conditions. Researchers can easily restrict or permit access to certain size classes of soil fauna to determine their contribution to litter mass loss by choosing adequate mesh size or applying specific biocides. In particular, the mesofauna has received much attention since it comprises two very abundant and diverse microarthropod groups, the Collembola (springtails) and Acari (mites). We comprehensively searched the literature from the mid‐1960s to the end of 2005 for reports on litterbag experiments investigating the role of microarthropods in terrestrial decomposition. Thirty papers reporting 101 experiments satisfied our selection criteria and were included in the database. Our meta‐analysis revealed that microarthropods have a moderate but significant effect on mass loss. We discuss in detail the interactions of the microarthropod effect with study characteristics such as experimental design (e.g. number of bags, duration of experiment), type of exposed organic matter, climatic zone and land use of the study site. No publication bias was detected; however, we noticed a significant decrease in the microarthropod effect with publication year, indicating that, in the first decades of litterbag use, soil zoologists may have studied “promising” sites with a higher a priori probability of positive microarthropod effects on litter mass loss. A general weakness is that the treatments differ not only with respect to the presence or absence of microarthropods, but also with regard to mesh size (small to exclude microarthropods, wide to permit their access) or presence (to exclude microarthropods) and absence (to permit their access) of an insecticide. Consequently, the difference between the decomposition rates in the treatments is not a pure microarthropod effect but will be influenced by the additive effects of mesh size and insecticide. The relative contribution of the “true” microarthropod effect remains unknown without additional treatments controlling for the differential mesh size/insecticide effect. A meta‐analysis including only those studies using different mesh size and for which the data were corrected by subtracting an estimated mesh size effect based on data from the literature yielded a significantly negative microarthropod effect on litter decomposition. These results cast doubt on the widely accepted hypothesis that microarthropods generally exert a positive effect on litter mass loss. We conclude that after 40 years of litterbag studies our knowledge on the role of microarthropods in litter mass loss remains limited and that the inclusion of a third treatment in future studies is a promising way to retain litterbags as a meaningful tool of soil biological studies.     

转Bt cry1Ab基因水稻对稻田弹尾虫种群数量的影响

以转Bt cry1Ab基因水稻克螟稻1号(KMD1)和克螟稻2号(KMD2)及其亲本非转基因水稻秀水11(XS11)为材料,于2003年9月和翌春4月,调查了KMD1和KMD2对水稻灌浆期和收割后休田期稻田土表落叶层中弹尾虫种群数量的影响.结果表明,KMD植株表达的cry1Ab杀虫蛋白可在稻田环境中残留160 d以上;在水稻灌浆期采用吸虫器法在稻田落叶层中采集到灰橄榄长角跳虫(Entomobrya griseoolivata)和钩圆跳虫(Bourletiella christianseni)等2种弹尾虫,其中灰橄榄长角跳虫在KMD1和KMD2稻田中的种群密度显著高于XS11稻田;在水稻收割后休田期采用网袋法采集到灰橄榄长角跳虫、钩圆跳虫、球角跳虫(Hypogastrura matura)和等节跳虫(Isotoma monochaeta)等4种弹尾虫,其中转Bt基因水稻稻田中的灰橄榄长角跳虫和球角跳虫的种群密度显著高于XS11稻田,且其植株组织残体生物量损失率显著高于XS11.     

高等植物钾转运蛋白

钾在植物生长发育过程中具有许多重要的作用。以模式植物拟南芥中克隆和鉴定的钾通道和转运体为基础,全面介绍了高等植物中钾转运体系家族,包括Shaker通道、KCO通道、KUP/HAK/KT转运体、HKT转运体和其它转运体。同时,分析了在高等植物中存在多种钾吸收和转运机制的可能原因。     

Gene Duplication and Loss of AANAT in Mammals Driven by Rhythmic Adaptations

Arylalkylamine N-acetyltransferase (AANAT) plays a crucial role in synchronizing internal biological functions to circadian and circannual changes. Generally speaking, only one copy of AANAT gene has been found in mammals, however, three independent duplications of this gene were detected in several cetartiodactyl lineages (i.e., Suidae, Hippopotamidae, and Pecora), which originated in the middle Eocene, a geological period characterized with the increased climate seasonality. Lineage-specific expansions of AANAT and the associated functional enhancement in these lineages strongly suggest an improvement in regulating photoperiodic response to adapt to seasonal climate changes. In contrast, independent inactivating mutations or deletions of the AANAT locus were identified in the four pineal-deficient clades (cetaceans, sirenians, xenarthrans, and pangolins). Loss of AANAT function in cetaceans and sirenians could disrupt the sleep-promoting effects of pineal melatonin, which might contribute to increasing wakefulness, adapting these clades to underwater sleep. The absence of AANAT and pineal glands in xenarthrans and pangolins may be associated with their body temperature maintenance. The present work demonstrates a far more complex and intriguing evolutionary pattern and functional diversity of mammalian AANAT genes than previously thought and provides further evidence for understanding AANAT evolution as driven by rhythmic adaptations in mammals.     

Species diversity and decomposition in laboratory aquatic systems: the role of species interactions

1. Interest in the effects of biodiversity on ecosystem processes is increasing, stimulated by the global species decline. Different hypotheses about the biodiversity‐ecosystem functioning (BEF) relationship have been put forward and various underlying mechanisms proposed for different ecosystems. 2. We investigated BEF relationships and the role of species interactions in laboratory experiments focussing on aquatic decomposition. Species richness at three different trophic levels (leaf detritus, detritus‐colonising fungi and invertebrate detritivores) was manipulated, and its effects on leaf mass loss and fungal growth were assessed in two experiments. In the first, monocultures and mixtures of reed (Phragmites australis), alder (Alnus glutinosa) and oak (Quercus cerris) leaf disks were incubated with zero, one or eight fungal species. Leaf mixtures were also incubated with combinations of three and five fungal species. In the second experiment, reed leaf disks were incubated with all eight fungal species and offered to combinations of one, two, three, four or five macroinvertebrate detritivores with different feeding modes. 3. Results from the first experiment showed that leaf mass loss was directly related to fungal mass and varied unimodally with the number of fungi, with a maximum rate attained at intermediate diversity in oak and reed and at maximum diversity in alder (the fastest decomposing leaf). 4. Mixing litter species stimulated fungal growth but interactions between species of fungi slowed down decomposition. In contrast, mixtures of macroinvertebrate detritivores reduced fungal mass and accelerated leaf decomposition. Possible explanations of the positive relationship between detritivore diversity and decomposition are a reduction in fungal dominance and a differentiation in the use of different resource patches promoted by higher fungal diversity. 5. In conclusion, the results show a general increase in decomposition rate with increasing biodiversity that is controlled by within‐ and between‐trophic level interactions, and support the hypothesis of both bottom‐up and top‐down effects of diversity on this process.     

Thermogenic characteristics and evaporative water loss in the tree shrew (Tupaia belangeri)

Thermogenic characteristics and evaporative water loss were measured at different temperatures in Tupaia belangeri. The thermal neutral zone (TNZ) of T. belangeri was 30–35 °C. Mean body temperature was 39.76±0.27 °C and mean body mass was 100.86±9.09 g. Basal metabolic rate (BMR) was 1.38±0.03 ml O₂/g h. Average minimum thermal conductance (C_m) was 0.13±0.01 ml O₂/g h °C. Evaporative water loss in T. belangeri increased when the temperature rose; the maximal evaporative water loss was 3.88±0.41 mg H₂O/g h at 37.5 °C. The results may reflect features of small mammals in the sub-tropical plateau region: T. belangeri had high basal metabolic rate and high total thermal conductance, compared with the predicted values based on their body mass whilst their body temperatures are relatively high; T. belangeri has high levels of evaporative water loss and poor water-retention capacity. Evaporative water loss plays an important role in temperature regulation.