Efficient non-enzymatic cleavage of Staphylococcus aureus plasmid DNAs mediated by neodymium ions

Staphylococcus aureus plasmids are the main factor in the spreading of antibacterial resistance among bacterial strains that has emerged on a worldwide scale. Plasmids recovered from 12 clinical and food isolates of S. aureus were treated with 10 mM free lanthanide Nd³⁺ ions (non-enzymatic cleavage agent) in Hepes buffer (pH 7.5) at 70 °C. Topological forms of plasmids—closed circular (ccc), open circular (oc), and linear (lin)—produced by cleavage at different times were separated using pulsed-field agarose gel electrophoresis. The method is proposed to detect and differentiate several plasmids in the same bacterial strain according to their size.     

Silicon Nanowires and Lithium Cobalt Oxide Nanowires in Graphene Nanoribbon Papers for Full Lithium Ion Battery

Described here is the production and characterization of a scalable method to produce 3D structured lithium ion battery anodes using free‐standing papers of porous silicon nanowires (Si‐NW) and graphene nanoribbons (GNRs). Using simple filtration methods, GNRs and Si‐NWs can be entangled into a mat thereby forming Si‐NW GNR papers. This produces anodes with high gravimetric capacity (up to 2500 mA h g^?1) and high areal and volumetric capacities (up to 11 mA h cm^?2 and 3960 mA h cm?³). The compact structure of the anode is possible since the GNR volume occupies a high proportion of empty space within the composite paper. These Si‐NW/GNR papers have been cycled for over 300 cycles, exhibiting a stable life cycle. Combined with LiCoO₂ nanowires, a full battery is produced with high energy density (386 Wh kg^?1), meeting requirements for high performance devices.     

Synthesis and characterization of novel Na15(SO4)5F4Cl:Ce3+ halosulfate phosphors

A series of Na₁₅(SO₄)₅F₄Cl phosphors doped with Ce³⁺ ions was prepared using the wet chemical method. X‐Ray diffraction studies were used to determine their phase formation and purity. Fourier transform infrared spectroscopy effectively identified the chemical bonds present in the molecule. The photoluminescence properties of the as‐prepared phosphors were investigated and the Ce³⁺ ions in these hosts were found to give broadband emission in the UV range. For the thermoluminescence study, phosphors were irradiated with a 5 Gy dose of γ‐rays from a ⁶⁰Co source. Chen’s half‐width method was employed to calculate the trapping parameters from the thermoluminescence glow curve. Copyright © 2016 John Wiley & Sons, Ltd.     

Improving green emission of Tb3+ ions in BaO‐B2O3‐P2O5 glasses by means of Al3+ ions

BaO‐B₂O₃‐P₂O₅ glasses doped with a fixed concentration of Tb³⁺ ions and varying concentrations of Al₂O₃ were synthesized, and the influence of the Al³⁺ ion concentration on the luminescence efficiency of the green emission of Tb³⁺ ions was investigated. The optical absorption, excitation, luminescence spectra and fluorescence decay curves of these glasses were recorded at ambient temperature. The emission spectra of terbium ions when excited at 393 nm exhibited two main groups of bands, corresponding to ⁵D₃ → ⁷F_j (blue region) and ⁵D₄ → 7F_j (green region). From these spectra, the radiative parameters, viz., spontaneous emission probability A, total emission probability A_T, radiative lifetime τ and fluorescent branching ratio β, of different transitions originating from the ⁵D₄ level of Tb³⁺ ions were evaluated based on the Judd‐Ofelt theory. A clear increase in the quantum efficiency and luminescence of the green emission of Tb³⁺ ions corresponding to ⁵D₄ → ⁷F₅ transition is observed with increases in the concentration of Al₂O₃ up to 3.0 mol%. The improvement in emission is attributed to the de‐clustering of terbium ions by Al³⁺ ions and also to the possible admixing of wave functions of opposite parities. Copyright © 2016 John Wiley & Sons, Ltd.     

Purification and Characterization of Nk‐3FTx: A Three Finger Toxin from the Venom of North East Indian Monocled Cobra

Snake venom three finger toxins (3FTxs) are a non‐enzymatic family of venom proteins abundantly found in elapids. We have purified a 7579.5 ± 0.591 Da 3FTx named as Nk‐3FTx from the venom of Naja kaouthia of North East India origin. The primary structure was determined by a combination of N‐terminal sequencing and electrospray ionization  liquid chromatography‐mass spectrometry/mass spectrometry. Biochemical and biological characterization reveal that it is nontoxic to human cell lines and exhibit mild anticoagulant activity when tested on citrated human plasma. Nk‐3FTx was found to affect the compound action potential (CAP) and nerve conduction velocity of isolated toad sciatic nerve. This is the first report of a non‐conventional 3FTx from Naja kaouthia venom that reduces CAP for its neurotoxic effect. Further studies can be carried out to understand the mechanism of action and to explore its potential therapeutic application.     

Co-assembly of Kv4 α Subunits with K+ Channel-interacting Protein 2 Stabilizes Protein Expression and Promotes Surface Retention of Channel Complexes

Members of the K⁺ channel-interacting protein (KChIP) family bind the distal N termini of members of the Shal subfamily of voltage-gated K⁺ channel (Kv4) pore-forming (α) subunits to generate rapidly activating, rapidly inactivating neuronal A-type (I_A) and cardiac transient outward (I_to) currents. In heterologous cells, KChIP co-expression increases cell surface expression of Kv4 α subunits and Kv4 current densities, findings interpreted to suggest that Kv4·KChIP complex formation enhances forward trafficking of channels (from the endoplasmic reticulum or the Golgi complex) to the surface membrane. The results of experiments here, however, demonstrate that KChIP2 increases cell surface Kv4.2 protein expression (∼40-fold) by an order of magnitude more than the increase in total protein (∼2-fold) or in current densities (∼3-fold), suggesting that mechanisms at the cell surface regulate the functional expression of Kv4.2 channels. Additional experiments demonstrated that KChIP2 decreases the turnover rate of cell surface Kv4.2 protein by inhibiting endocytosis and/or promoting recycling. Unexpectedly, the experiments here also revealed that Kv4.2·KChIP2 complex formation stabilizes not only (total and cell surface) Kv4.2 but also KChIP2 protein expression. This reciprocal protein stabilization and Kv4·KChIP2 complex formation are lost with deletion of the distal (10 amino acids) Kv4.2 N terminus. Taken together, these observations demonstrate that KChIP2 differentially regulates total and cell surface Kv4.2 protein expression and Kv4 current densities.     

Multiple Interactions between Cytoplasmic Domains Regulate Slow Deactivation of Kv11.1 Channels

The intracellular domains of many ion channels are important for fine-tuning their gating kinetics. In Kv11.1 channels, the slow kinetics of channel deactivation, which are critical for their function in the heart, are largely regulated by the N-terminal N-Cap and Per-Arnt-Sim (PAS) domains, as well as the C-terminal cyclic nucleotide-binding homology (cNBH) domain. Here, we use mutant cycle analysis to probe for functional interactions between the N-Cap/PAS domains and the cNBH domain. We identified a specific and stable charge-charge interaction between Arg⁵⁶ of the PAS domain and Asp⁸⁰³ of the cNBH domain, as well an additional interaction between the cNBH domain and the N-Cap, both of which are critical for maintaining slow deactivation kinetics. Furthermore, we found that positively charged arginine residues within the disordered region of the N-Cap interact with negatively charged residues of the C-linker domain. Although this interaction is likely more transient than the PAS-cNBD interaction, it is strong enough to stabilize the open conformation of the channel and thus slow deactivation. These findings provide novel insights into the slow deactivation mechanism of Kv11.1 channels.     

Stability and Transformations of bis-PNA/DNA Triplex Structural Isomers

Abstract

Structurally isomeric complexes formed between homopyrimidine bis-PNAs (T₂JT₂JT₄-linker-T₄CT₂CT₂) and single- and double-stranded DNA targets were investigated. These complexes are triplexes designated S1, S2 and S3 in order of increased mobility by polyacrylamide gel electrophoresis. It is shown that the S3 isomer is formed only on double-stranded DNA and possesses highest stability. Isomers S2 and S1 are formed upon binding of bis-PNA to double-stranded as well as to single-stranded DNA. It was found that the stability of the isomer S1 increases dramatically in the presence of excess single-stranded oligonucleotide complementary to the bis-PNA. The structure of the stabilized S1 isomer is proposed to consist of two bis-PNA/DNA triplexes. The relationship between the yield of the isomer S1 formed on single-stranded DNA and the bis-PNA concentration was investigated and a kinetic model of the formation of S1 is presented.     

Potassium channels in Eremosphaera viridis

The dependence of the membrane potential of Eremosphaera viridis on different external concentrations of potassium, sodium, calcium, and protons was compared with the diffusion potential measured in the dark and in the presence of NaN₃. In contrast to some other algae, the membrane potential in the light as well as in the dark seemed to be predominantly determined by the calculated diffusion potential and less by an electrogenic pump which, however, seemed to be involved at potassium concentrations >1 mol·m^-3 and at higher pH_os (>pH 6). Furthermore, some characteristics of an action-potential-like response (CAP) triggered by light-off, and independent of the membrane-potential threshold value, were determined. The CAP had a delay period of 5.4 s and needed 4.5 s for polarization to a plateau. On average, the plateau held for 8.8 s and the CAP lasted 37.7 s. The peak amplitudes of CAP (P _AP) exactly followed the Nernst potential of potassium. Other cations like sodium, calcium and protons did not appreciably affect the peak amplitudes of CAP. From these and other results it can be assumed that the CAP is caused by a temporary opening of potassium channels in the plasma membrane of Eremosphaera (Köhler et al., 1983, Planta 159, 165–171). The release of a CAP by light-off has been partly explained by the participation of a transient increase of proton concentration in the cytoplasm. It was possible to trigger a CAP by external pH changes and by the addition of sodium acetate, thus supporting the hypothesis that a pH decrease in the cytoplasm may be one element of the signal transfer from the photosynthetic system to the potassium channels in the plasmalemma. Calcium also seemed to have an influence on triggering the CAP.Abbreviations and symbols CAP chemical-induced action-potential-like response - E _D calculated diffusion potential (mV) - E _D ^* measured diffusion potential (mV) - E _K potassium equilibrium potential (mV) - E _m membrane potential (mV) - P _AP peak of action potential (mV) Part II will appear in Planta, Vol. 167, No. 1, 1986     

Fluoride in simulated rain affects the morphoanatomy and physiology of Eugenia dysenterica (Mart.) DC

Fluorine is found in the atmosphere mainly in the form of hydrofluoric acid, released by industries linked to the production of aluminum, glass and ceramics, in addition to phosphate fertilizers. It is an element of high toxicity, quite harmful to plant growth. Eugenia dysenterica (Mart.) DC. (Myrtaceae) species is a fruit tree native to the Brazilian Cerrado with wide distribution in anthropic regions. Thus, the objective of this work was to investigate the potential of E. dysenterica for fluoride bioindication through the characterization of the effects of KF (potassium fluoride), in simulated rain. The damage caused by KF toxicity were analyzed through morpho-anatomical and physiological alterations in the leaves. Young plants with approximately 40 days-old and standardized height (∼14 cm) were transferred to 5 L individual pots containing substrate composed of washed sand, vermiculite and bioplant (1:1:1). The plants were submitted to KF daily, in simulated rain, at concentrations of 0, 10, 20 and 30 mg L⁻¹ of KF, for a period of 27 days. The experimental design was completely randomized, composed by 1 plant per pot with 4 replicates, i.e., 4 plants per treatment. After the KF exposure period, the E. dysenterica leaves were evaluated visually and physiologically and leaf fragments were collected for anatomical analysis. E. dysenterica presented necrosis formation on the adaxial side, from the border to the center, and tissue degradation with formation of cellular plasmolysis and elongation, intensified with increasing KF dose. Chlorophyll content and photochemical parameters, obtained through chlorophyll a fluorescence, indicated severe damage in photosystem II with increased KF doses. The results showed that exposure of E. dysenterica to fluoride allows to characterize the species as a potential bioindicator of reaction to the pollutant and to be used in environmental biomonitoring programs.