异体自噬的操控:病原微生物对宿主翻译后修饰的调节作用

自噬是一种广泛存在于真核细胞中的溶酶体依赖性分解代谢途径,涉及细胞分化、饥饿耐受和免疫防御等生物学功能.其中,异体自噬被定义为真核细胞特异性识别并清除胞内病原微生物的过程,是免疫细胞行使宿主防御的重要方式.然而,许多病原微生物已经"开发"了特殊的毒力因子(包括效应蛋白质和表面蛋白质等),衍生出多种逃避或劫持自噬作用的策...     

Formation of adducts in the reaction of glyoxal with 2'-deoxyguanosine and with calf thymus DNA

The reactions of glyoxal with 2′-deoxyguanosine and calf thymus single- and double-stranded DNA in aqueous buffered solutions at physiological conditions resulted in the formation of two previously undetected adducts in addition to the known reaction product 3-(2′-deoxy-β-d-erythro-pentofuranosyl)-5,6,7-trihydro-6,7-dihydroxyimidazo[1,2-a]purine-9-one (Gx-dG). The adducts were isolated and purified by reversed-phase liquid chromatography and structurally characterised by UV absorbance, mass spectrometry, ¹H and ¹³C NMR spectroscopy. The hitherto unknown adducts were identified as: 5-carboxymethyl-3-(2′-deoxy-β-d-erythro-pentofuranosyl)-5,6,7-trihydro-6,7-dihydroxyimidazo[1,2-a]purine-9-one (Gx₂-dG) and N²-(carboxymethyl)-9-(2′-deoxy-β-d-erythro-pentofuranosyl)-purin-6(9H)-one (Gx₁-dG). Both adducts were shown to arise from Gx-dG. Gx-dG and Gx₂-dG were found to be unstable and partly transformed to Gx₁-dG, which is a stable adduct and seems to be the end-product of the glyoxal reaction with 2′-deoxyguanosine. All adducts formed in the reaction of glyoxal with 2′-deoxyguanosine were observed in calf thymus DNA. Also in DNA, Gx₁-dG was the only stable adduct. The transformation of Gx-dG to Gx₁-dG seemed to take place in single-stranded DNA and therefore, Gx₁-dG may be a potentially reliable biomarker for glyoxal exposure and may be involved in the genotoxic properties of the compound.     

Diverse post-translational modifications of the pannexin family of channel-forming proteins

The pannexin family of channel-forming proteins is composed of 3 distinct but related members called Panx1, Panx2, and Panx3. Pannexins have been implicated in many physiological processes as well as pathological conditions, primarily through their function as ATP release channels. However, it is currently unclear if all pannexins are subject to similar or different post-translational modifications as most studies have focused primarily on Panx1. Using in vitro biochemical assays performed on ectopically expressed pannexins in HEK-293T cells, we confirmed that all 3 pannexins are N-glycosylated to different degrees, but they are not modified by sialylation or O-linked glycosylation in a manner that changes their apparent molecular weight. Using cell-free caspase assays, we also discovered that similar to Panx1, the C-terminus of Panx2 is a substrate for caspase cleavage. Panx3, on the other hand, is not subject to caspase digestion but an in vitro biotin switch assay revealed that it was S-nitrosylated by nitric oxide donors. Taken together, our findings uncover novel and diverse pannexin post-translational modifications suggesting that they may be differentially regulated for distinct or overlapping cellular and physiological functions.     

Redescription of Mymarilla Westwood,new synonymies under Cremnomymar Ogloblin (Hymenoptera,Mymaridae) and discussion of unusual wings

The monotypic genus Mymarilla Westwood is known only from St. Helena, a remote island in the South Atlantic Ocean. The peculiar species M. wollastoni Westwood (Mymaridae) is redescribed and illustrated from non-type material. Mymarilla is compared with Cremnomymar Ogloblinspp. from the Juan Fernández Islands in the South Pacific Ocean. Stephanodes Enock is shown to be the most likely sister genus to Mymarilla. Nesopolynema Ogloblin, syn. n., Oncomymar Ogloblin, syn. n., Scolopsopteron Ogloblin, syn. n., are placed in synonymy under Cremnomymar and their species transferred as Cremnomymar caudatum (Ogloblin 1952), comb. n., C. dipteron (Ogloblin 1957), comb. n., and C. kuscheli (Ogloblin 1952), comb. n. Wing shape and wing reductions in Mymaridae are discussed in relation to biogeography, particularly with respect island faunas and to four genera, Cremnomymar, Mymarilla, Parapolynema Fidalgo, and Richteria Girault, some or all of whose species have more or less convex fore wings.     

Fish communities’ response to implementation of restoring measures in a highly artificialized estuary

Over the years, the Mondego estuary has undergone various anthropogenic impacts. One of the most serious was the closing of the communication between the two arms of the system (north and south), in the 1990s, which promoted eutrophication and a consequent water quality decline in the south arm. Several mitigation measures were subsequently implemented, in particular the re-establishing of the communication between the two arms in 2006, increasing water flow and reducing water residence time in the south arm. The present study aimed to evaluate the impact of management measures on the ecological and conservation condition of the Mondego estuary, through a longitudinal assessment of the structure and composition of the fish communities over a decade. The Mondego fish community showed important modifications over the years, in terms of structure, ecological quality and conservation value. The fish community status improved following the reconnection of both arms. In the south arm those changes appear to be more evident than in the other estuarine areas, where an inverse pattern was observed in the last few years. A redistribution of the fish species within the system may have been responsible for those unexpected alterations in the north arm and upstream area.     

Functional analysis tools for post‐translational modification: a post‐translational modification database for analysis of proteins and metabolic pathways

Post‐translational modifications (PTMs) are critical regulators of protein function, and nearly 200 different types of PTM have been identified. Advances in high‐resolution mass spectrometry have led to the identification of an unprecedented number of PTM sites in numerous organisms, potentially facilitating a more complete understanding of how PTMs regulate cellular behavior. While databases have been created to house the resulting data, most of these resources focus on individual types of PTM, do not consider quantitative PTM analyses or do not provide tools for the visualization and analysis of PTM data. Here, we describe the Functional Analysis Tools for Post‐Translational Modifications (FAT‐PTM) database ( https://bioinformatics.cse.unr.edu/fat-ptm/ ), which currently supports eight different types of PTM and over 49 000 PTM sites identified in large‐scale proteomic surveys of the model organism Arabidopsis thaliana. The FAT‐PTM database currently supports tools to visualize protein‐centric PTM networks, quantitative phosphorylation site data from over 10 different quantitative phosphoproteomic studies, PTM information displayed in protein‐centric metabolic pathways and groups of proteins that are co‐modified by multiple PTMs. Overall, the FAT‐PTM database provides users with a robust platform to share and visualize experimentally supported PTM data, develop hypotheses related to target proteins or identify emergent patterns in PTM data for signaling and metabolic pathways.