Spatial patterns in cushion‐dominated plant communities of the high Andes of central Chile: How frequent are positive associations?

Question: In stressful abiotic environments positive plant interaction is expected to be a frequent and an important process driving community composition and structure. In the high Andes in central Chile, the cushion plant Azorella madreporica dominates plant communities and appears to benefit the assemblage of species that grows within it. However, there are also many other species that grow outside this nurse cushion plant, which may or may not interact with this species. What is the prevailing type of spatial associations among the plant species that are not growing inside the nurse plant? What is the type of interactions between cushion plants and those species growing outside them? Location: Molina River basin (33°20'S, 70°16’ W, 3600 m a.s.l.), in the Andes of central Chile, ca. 50 km east of Santiago. Methods: Two accurate mapping plots of individual plants of different species were located at two summits (Franciscano and Tres Puntas sites). The spatial distributions and associations between species growing outside cushions and within cushions at each site were estimated by point‐pattern analyses using the univariate and bivariate transformations of Ripley's K‐functions. Results: We found both positive and, especially, negative spatial associations (8 out of 12 species in Franciscano site) between A. madreporica cushions and plants growing outside them. However, most of the species showed positive spatial associations among them. The variation in spatial association was site‐specific and also depended on the type of plants involved. Adesmia spp., the second most abundant non‐cushion species, displayed negative associations with cushions and positive associations with other species growing outside cushions. Conclusions: Our study suggests very complex interactions among species, which ranged from positive to negative, and are also affected by abiotic environmental conditions.     

Rational subjects, marriage counselling and the conundrums of eugenics

Against the background of degeneration and the perceived threat to the nation's health and stock, family politics came to constitute an important site for eugenic discourses and interventions. Eugenic regulation of reproductive sexuality and marriage was not only pursued through 'negative' eugenics but also through educational policies targeted at young adults and youth. Switzerland serves as a useful case to explore a general idea, namely the limitations for eugenicists of exploiting the concept of a rational subject in order to achieve their ends. Practices of 'positive eugenics' crucially hinged on the utilitarian principle of rationality underpinning positive eugenics which this paper seeks to elaborate. Eugenicists devised tools to deal efficiently with social problems on a collective as well as an individual basis by deploying technologies of government which conceived individuals to be members of a population who were each held responsible for the generation of healthy future generations. As a form of 'sustaining, multiplying and ordering life' eugenics thus relied on the premise that its ideas would be adopted through an appeal to rationality and, where this was insufficient, through a series of coercive measures. Relying on conviction and education about the merits of eugenics, however, posed particular problems to positive eugenic thinking and practice.     

A Periodic Droop Model for Two Species Competition in A Chemostat

Both uniform persistence and the existence of periodic coexistence state are established for a periodically forced Droop model on two phytoplankton species competition in a chemostat under some appropriate conditions. Numerical simulations using biological data are presented as well to illustrate the main result. Research supported in part by the NSERC of Canada and the MITACS of Canada.     

一类正广义系统的能控性和能观性

对于广义系统的能控性和能观性的研究已经取得了很多成果,但对于正广义系统的研究,目前还处于起步阶段,需要进一步的研究．本文研究了一类正广义系统,通过Drazin逆给出了判别系统能控性和能观性的充分条件,并通过例子验证了本文结论的有效性．     

Conspecific versus heterospecific litter effects on seedling establishment

Plant litter is an important determinant of seed germination and seedling establishment. Positive effects of litter have received considerable attention, but few studies have explicitly tested whether seedlings are more facilitated by conspecific litter compared to heterospecific litter. In order to contrast conspecific and heterospecific facilitative effects on seedling establishment, we used Anthriscus sylvestris, Angelica sylvestris, Pimpinella saxifraga and different combinations of their seeds and litter seedbeds as a model system. Although litter had a significant species-specific effect on seedling emergence, we found no evidence of strictly conspecific facilitation. Anthriscus sylvestris displayed a positive response to all types of litter. In contrast, there was a clear negative effect of conspecific litter in Pimpinella saxifraga. Activated carbon did not modify the negative effect, indicating that chemical compounds were not the cause. Our study suggests a high level of idiosyncrasy in response to litter at the species level.     

Molecular evolution of paclitaxel biosynthetic genes <Emphasis Type="Italic">TS</Emphasis> and <Emphasis Type="Italic">DBAT</Emphasis> of <Emphasis Type="Italic">Taxus</Emphasis> species

Evolutionary patterns of sequence divergence were analyzed in genes from the conifer genus Taxus (yew), encoding paclitaxel biosynthetic enzymes taxadiene synthase (TS) and 10-deacetylbaccatin III-10β-O-acetyltransferase (DBAT). N-terminal fragments of TS, full-length DBAT and internal transcribed spacer (ITS) were amplified from 15 closely related Taxus species and sequenced. Premature stop codons were not found in TS and DBAT sequences. Codon usage bias was not found, suggesting that synonymous mutations are selectively neutral. TS and DBAT gene trees are not consistent with the ITS tree, where species formed monophyletic clades. In fact, for both genes, alleles were sometimes shared across species and parallel amino acid substitutions were identified. While both TS and DBAT are, overall, under purifying selection, we identified a number of amino acids of TS under positive selection based on inference using maximum likelihood models. Positively selected amino acids in the N-terminal region of TS suggest that this region might be more important for enzyme function than previously thought. Moreover, we identify lineages with significantly elevated rates of amino acid substitution using a genetic algorithm. These findings demonstrate that the pattern of adaptive paclitaxel biosynthetic enzyme evolution can be documented between closely related Taxus species, where species-specific taxane metabolism has evolved recently.     

Topological analysis of plasmid chromatin from yeast and mammalian cells

Yeast has proven to be a powerful system for investigation of chromatin structure. However, the extent to which yeast chromatin can serve as a model for mammalian chromatin is limited by the significant number of differences that have been reported. To further investigate the structural relationship between the two chromatins, we have performed a DNA topological analysis of pRSSVO, a 5889 base-pair plasmid that can replicate in either yeast or mammalian cells. When grown in mammalian cells, pRSSVO contains an average of 33 negative supercoils, consistent with one nucleosome per 181 bp. This is close to the measured nucleosome repeat length of 190 bp. However, when grown in yeast cells, pRSSVO contains an average of only 23 negative supercoils, which is indicative of only one nucleosome per 256 bp. This is dramatically different from the measured nucleosome repeat length of 165 bp. To account for these observations, we suggest that yeast chromatin is composed of relatively short ordered arrays of nucleosomes with a repeat of 165 bp, separated by substantial gaps, possibly corresponding to regulatory regions.     

Domain-Specific Positive Selection Contributes to the Evolution of Arabidopsis Leucine-Rich Repeat Receptor-Like Kinase (LRR RLK) Genes

Leucine-rich repeat receptor-like kinases (LRR RLKs) comprise the largest group within the plant receptor-like kinase (RLK) superfamily, and the Arabidopsis genome alone contains over 200 LRR RLK genes. Although there is clear evidence for diverse roles played by individual LRR RLK genes in Arabidopsis growth and development, the evolutionary mechanism for this functional diversification is currently unclear. In this study, we focused on the LRRII RLK subfamily to investigate the molecular mechanisms that might have led to the functional differentiation of Arabidopsis LRR RLK genes. Phylogenetic analysis of 14 genes in this subfamily revealed three well-supported groups (I, II, and III). RT-PCR analysis did not find many qualitative differences in expression among these 14 genes in various Arabidopsis tissues, suggesting that evolution of regulatory sequences did not play a major role in their functional divergence. We analyzed substitution patterns in the predicted ligand-binding regions of these genes to examine if positive selection has acted to produce novel ligand-binding specificities, using the nonsynonymous/synonymous rate ratio (d _N/d _S) as an indicator of selective pressure. Estimates of d _N/d _S ratios from multiple methods indicate that nonsynonymous substitutions accumulated during divergence of the three lineages. Positive selection is likely to have occurred along the lineages ancestral to groups II and III. We suggest that positive selection on the ligand-binding sites of LRRII RLKs promoted diversification of ligand-binding specificities and thus contributed to the functional differentiation of Arabidopsis LRRII RLK genes during evolution. [Reviewing Editor: Dr. Martin Kreitman]