Automicrite facies on steep slopes (Triassic, Dolomites, Italy)

Summary  The Triassic platforms of the Dolomite Alps of northern Italy are famous for their well-preserved platform flanks. We report on the discovery of extensive automicrite on these platform slopes. Automicrite stands for autochthonous micritic carbonate, formed by in-situ precipitation that was mediated by organisms. The automicrite occurs on the 400 m high, 25°–35° dipping slopes of the Sella platform that were pervasively dolomitized. Textures include peloidal aggregates (thrombolitic microfabric), irregular spar-filled cavities as well as biodetritus and are in many samples clearly visible despite the dolomitization. The peloids may occur as loose particles floating in lighter-colored cement or form a loosely connected framework. The preservation of automicrite textures along with the nearly unaltered slope geometry of the platform lead to several conclusions on the development of automicrite on such steep and high platform slopes.

Reed cut,habitat diversity and productivity in wetlands

There is a conflict between nature conservation and thatching industry regarding the management of reedbeds. On one hand, reedbeds are of an economical importance by providing thatching material, on the other hand, they harbour several endangered species. Reedbeds are typically managed by winter cutting, but its impacts on biodiversity are poorly understood. Our aim was to study the effects of winter cutting on the habitat diversity and structural heterogeneity of wetlands in a lowland alkali landscape (East-Hungary). We tested the following hypotheses: (i) Both diversity of plant species and habitat diversity are lower in winter cut wetlands compared to unmanaged stands. (ii) The distribution of biomass (green biomass, litter and standing dead biomass) is more homogeneous in winter cut wetlands compared to unmanaged ones. We found that winter cutting decreased habitat diversity and structural heterogeneity at multiple scales. Number of plant species and all measures of habitat diversity (number of patches, vegetation types and the length of vegetation margins) had lower scores in cut wetlands than in unmanaged ones. We found that unmanaged wetlands harboured high amount of accumulated biomass and they also maintained high habitat diversity likely due to the heterogeneous distribution of the biomass. In unmanaged wetlands, biomass accumulation did not decrease habitat diversity and also contributed to a higher structural heterogeneity. In cut wetlands, expansion of reed was an important driver of the decrease in habitat diversity and structural heterogeneity. Reed expansion likely overrode fine-scale edaphic conditions (hydrology and salinity) in shaping vegetation patterns; thus we suggest to avoid intensive winter cutting.     

Investigating the spatial accuracy of CBCT-guided cranial radiosurgery: A phantom end-to-end test study

PurposeTo evaluate the spatial accuracy of a frameless cone-beam computed tomography (CBCT)-guided cranial radiosurgery (SRS) using an end-to-end (E2E) phantom test methodology.Methods and materialsFive clinical SRS plans were mapped to an acrylic phantom containing a radiochromic film. The resulting phantom-based plans (E2E plans) were delivered four times. The phantom was setup on the treatment table with intentional misalignments, and CBCT-imaging was used to align it prior to E2E plan delivery. Comparisons (global gamma analysis) of the planned and delivered dose to the film were performed using a commercial triple-channel film dosimetry software. The necessary distance-to-agreement to achieve a 95% (DTA95) gamma passing rate for a fixed 3% dose difference provided an estimate of the spatial accuracy of CBCT-guided SRS. Systematic (∑) and random (σ) error components, as well as 95% confidence levels were derived for the DTA95 metric.ResultsThe overall systematic spatial accuracy averaged over all tests was 1.4 mm (SD: 0.2 mm), with a corresponding 95% confidence level of 1.8 mm. The systematic (Σ) and random (σ) spatial components of the accuracy derived from the E2E tests were 0.2 mm and 0.8 mm, respectively.ConclusionsThe E2E methodology used in this study allowed an estimation of the spatial accuracy of our CBCT-guided SRS procedure. Subsequently, a PTV margin of 2.0 mm is currently used in our department.     

Filament lumachelle on top of Middle Jurassic oolite limestones: event deposits marking the drowning of a Tethysian carbonate platform (Subbetic,southern Spain)

Bioclastic accumulations often occur on top of Tethysian carbonate platforms and crinoids are a common constituent of these bioclastic deposits on Lower and Middle Liassic carbonate platforms. In contrast, the relevant literature contains few examples in which the main constituent of the lumachels is thin-shelled bivalves (filaments). This paper presents a study of a filament lumachelle cropping out on top of a Middle Jurassic carbonate platform. The carbonate platform is represented by the Jabalcuz Formation, found in one of the northernmost Subbetic units (south of Jaén city). The lumachelle marks the demise of the carbonate platform and has special features that characterize the drowning phase. This process has been related with the syn-rift extensional tectonics associated to the opening of the Tethys westwards. Stratigraphically, the lumachelle occurs on top of shallow-water oolite limestones (Middle Jurassic) and is overlain by radiolarian-rich pelagic and resedimented deposits (Latest Callovian–Oxfordian). It occurs as a body (about 1.5 km wide and up to 8 m thick) made up entirely of densely packed thin bivalve shells. A remarkable feature of the bivalve shell beds is stromatolite-like crumpled lamination at the outcrop. The observations made at the outcrop scale, by microscope under transmitted light, and by cathodoluminiscence favor a diagenetic origin for this striking structure. Other hypotheses, such as its possible relation with seismicity, cannot be confirmed. The filaments would have filled one of the former basins that originated in relation with syn-rift fault-block tectonics leading to the demise of the carbonate platform. Tectonics was one of the main factors setting in motion a carbonate productivity crisis and the inhibition of a diverse benthic community. Once production failed in the carbonate factory, storms and probably hurricanes as well, swept shell deposits from the shallowest areas of the shallow-water carbonate platform and accumulated them in a coevally formed small half-graben basin. At least three main depositional stages can be differentiated in the fill of this half-graben basin, which was a sediment trap for the accumulation and preservation of the tiny bivalve shells against ebb surges. The massive accumulation of valves, the shortage of micrite around the filaments, outcrop morphology and facies relationships, along with regional geology, are among the arguments supporting this interpretation.     

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The essential role of clathrin-mediated endocytosis in the infectious entry of human enterovirus 71

Little is currently known about the infectious entry process of human enterovirus 71 (HEV71) into host cells, which may represent potential anti-viral targeting sites. In this study a targeted small-interfering RNA (siRNA) screening platform assay was established and validated to identify and profile key cellular genes involved in processes of endocytosis, cytoskeletal dynamics, and endosomal trafficking essential for HEV71 infection. Screen evaluation was conducted via the expression of well characterized dominant-negative mutants, bioimaging studies (double-labeled immunofluorescence assays, transmission electron microscopy analysis), secondary siRNA-based dosage dependence studies, and drug inhibition assays. The infectious entry of HEV71 into rhabdomyosarcoma cells was shown to be significantly inhibited by siRNAs targeting genes associated with clathrin-mediated endocytosis (CME) that include AP2A1, ARRB1, CLTC, CLTCL1, SYNJ1, ARPC5, PAK1, ROCK1, and WASF1. The functional role of CME was verified by the observation of strong co-localization between HEV71 particles and clathrin as well as dose-dependent inhibition of HEV71 infection upon siRNA knockdown of CME-associated genes. HEV71 entry by CME was further confirmed via inhibition by dominant-negative EPS15 mutants and treatment of CME drug inhibitors, with more than 80% inhibition observed at 20 μm chlorpromazine. Furthermore, HEV71 infection was shown to be sensitive to the disruption of human genes in regulating early to late endosomal trafficking as well as endosomal acidic pH. The identification of clathrin-mediated endocytosis as the entry pathway for HEV71 infection of susceptible host cells contributes to a better understanding of HEV71 pathogenesis and enables future development of anti-viral strategies against HEV71 infection.     

Diversity and spatial distribution of amoA-encoding archaea in the deep-sea sediments of the tropical West Pacific Continental Margin

Aims:  The ecological characteristics of the deep-sea amoA -encoding archaea (AEA) are largely unsolved. Our aim was to study the diversity, structure and distribution of the AEA community in the sediments of the tropical West Pacific Continental Margin, to develop a general view of the AEA biogeography in the deep-sea extreme environment.
Methods and Results:  Archaeal amoA clone libraries were constructed. Diverse and novel amoA sequences were identified, with the Bohol Sea, Bashi Strait and Sibuyan Sea harbouring the highest and the Bicol Shelf the lowest AEA diversity. Phylogenetic and statistical analyses illustrate a heterogeneous distribution of the AEA community, probably caused by the differential distribution of the terrestrial or estuarine AEA in the various sampling sites.
Conclusions:  The deep-sea sedimentary environments potentially harbour diverse and novel AEA in the tropical West Pacific Continental Margin. The stations in the Philippine inland seas (including station 3043) may represent AEA assemblages with various terrestrial influences and the stations connected directly to the open Philippine Sea may represent marine environment-dominant AEA assemblages.
Significance and Impact of Study:  Our study indicates the potential importance of geological and climatic events in the transport of terrestrial micro-organisms to the deep-sea sedimentary environments, almost totally neglected previously.     

Facies analysis of lower permian platform carbonates,sverdrup basin,canadian arctic archipelago

Summary The Asselian-Sakmarian strata of the Fosheim-Hamilton subbasin represent a distinct 15 000 km² depocentre located at the northeast margin of the main Sverdrup Basin in the Canadian Arctic Archipelago. Approximately 35 high-frequency cycles composed mainly of platformal carbonates with subaqueous evaporites accumulated at a time of renewed rifting activity in this subbasin. A general depositional model based on the facies analysis of the Asselian-Sakmarian strata shows that the carbonate platforms surrounding the Fosheim-Hamilton subbasin were segmented by the position of critical interfaces including the: 1) base of the fairweather wave abrasion zone; 2) base of the storm wave abrasion zone; and 3) base of the photic zone. The base of the fairweather wave abrasion zone divided the platforms into two broad parts; an inner shelf with a relatively quiet, semi-restricted lagoon and more agitated, open marine barries and shoals and an open marine mid-shelf with numerous reefal and non-reefal subenvironments extending from the base of fairweather wave abrasion zone to below the photic zone. Outer shelf and associated slope and basin were not present within the Fosheim-Hamilton subbasin but were present farther west along the margin of the main Sverdrup Basin.