Heteroclinic orbits indicate overexploitation in predator-prey systems with a strong Allee effect

Species establishment in a model system in a homogeneous environment can be dependent not only on the parameter setting, but also on the initial conditions of the system. For instance, predator invasion into an established prey population can fail and lead to system collapse, an event referred to as overexploitation. This phenomenon occurs in models with bistability properties, such as strong Allee effects. The Allee effect then prevents easy re-establishment of the prey species. In this paper, we deal with the bifurcation analyses of two previously published predator-prey models with strong Allee effects. We expand the analyses to include not only local, but also global bifurcations. We show the existence of a point-to-point heteroclinic cycle in these models, and discuss numerical techniques for continuation in parameter space. The continuation of such a cycle in two-parameter space forms the boundary of a region in parameter space where the system collapses after predator invasion, i.e. where overexploitation occurs. We argue that the detection and continuation of global bifurcations in these models are of vital importance for the understanding of the model dynamics.     

Evolution of prokaryotic homologues of the eukaryotic SEFIR protein domain

SEF/IL17 receptor (SEFIR) domains are mainly found in IL17 receptors (IL17Rs) and their adaptor proteins CIKS (connection to IKK and SAPK/JNK), which exert a host defense role in numbers of infectious diseases and promote inflammatory pathology in autoimmunity. Exploring the evolutionary pathway of SEFIR domains will provide further insight into their functions. Here, we have identified 84 SEFIR domain-containing proteins from more than 1400 prokaryotic genomes. As most SEFIR domain-containing bacterial genomes possess a single SEFIR encoding gene and the SEFIR protein domain forms homodimeric complexes like the Toll/IL1 receptor (TIR) domain, the single bacterial SEFIR proteins may receive binding partners from other organisms. Through comparative and phylogenetic sequence analyses, we show that bacterial SEFIR domain is more similar to that of vertebrate CIKS than IL17R, and it possibly emerges via a lateral gene transfer (LGT) from animals. In addition, our secondary and three-dimensional structural predictions of SEFIR domains reveal that human and pathogenic bacterial SEFIR domains share similar structural and electrostatic features. Our findings provide important clues for further experimental researches on determining the functions of SEFIR proteins in pathogenic prokaryotes.     

The role of the Golgi complex in the isolation and digestion of organelles

The origin of the membranes and lytic enzymes involved in autophagy has been studied in metamorphosing insect fat body.The Golgi complex has two functions in the organelle destruction which takes place when fat body cells change their activities. (1) It gives rise to envelopes which externalize organelles scheduled for destruction. Microbodies, mitochondria and rough endoplasmic reticulum are sequentially removed from the cytoplasm by investment in isolation membranes. During the isolating phase, isolation membranes have the same osmiophilia as the outer saccular and microvesicular components of the Golgi complex, they do not contain lytic enzymes and they are specific in their adhesion to organelles scheduled for destruction. (2) The Golgi complex gives rise to lytic enzymes. Primary lysosomes which contain acid phosphatase fuse with the isolation bodies formed from invested organelles to become autophagic vacuoles. During this lytic phase, acid phosphatase is present in the inner saccules and microvesicular components of the Golgi complex, in the primary lysosomes seen fusing with isolation bodies and in autophagic vacuoles.     

Plant use in a city in Northern Italy during the late Mediaeval and Renaissance periods: results of the archaeobotanical investigation of “The Mirror Pit” (14th–15th century a.d.) in Ferrara

Results are presented from archaeobotanical analyses carried out in ‘The Mirror Pit’, a rectangular pit, situated in the city of Ferrara, in Emilia Romagna—Northern Italy. The study is part of wider research focused on the Mediaeval period of this city. The pit belongs to a building which was in use from the second half of 14th to the end of 15th century a.d. The pit itself was filled with domestic rubbish during a few years in the middle of the 15th century. The layers were preserved by waterlogging and are therefore extraordinarily rich in organic remains and artifacts, among which was the beautiful spherical mirror which gave its name to the pit. Approximately 256,000 well-preserved seeds and fruits belonging to 98 species or carpological types were identified in 12 l of sediment from the different layers. Ficus carica, Brassica rapa subsp. rapa/subsp. sylvestris and Vitis vinifera subsp. vinifera prevailed. Many cultivated plants and weeds were present, together with a smaller number of wild plants of wet environments and woodlands. Altogether they provided much new information on the diet (cultivated and wild fruits, cereals and pulses, vegetables, spices and medicinal/fibre/oil plants) of the middle to upper class inhabitants of a city in Northern Italy during the Renaissance period. The records also yielded evidence of domestic activities such as winemaking, oil making, mustard making and other kitchen practices.     

Putative basidiomycete teleomorphs and phylogenetic placement of the coelomycete genera: Chaetospermum, Giulia and Mycotribulus based on nu-rDNA sequences

Few basidiomycetes are known to have a coelomycete anamorph. The partial SSU and LSU of nu-rDNA of three coelomycete genera (Chaetospermum, Giulia, Mycotribulus) were sequenced to determine their phylogenetic relationship. M. mirabilis was well placed in the Physalacriaceae, Agaricales, whereas G. tenuis clusters with the Corticiaceae, Corticiales. C. camelliae and C. artocarpi form a close relationship with the Sebacinaceae, Sebacinales. Although morphologically these coelomycetes are pycnidial and with appendaged conidia, they show no consistency in their phylogenetic relationship, belonging to disparate major taxonomic groups with putative teleomorphs in the Agaricales, Corticiales and Sebacinales. Further molecular studies of coelomycetes may be rewarding to evaluate their phylogenetic affinities.     

Development of a pituitary-specific cre line targeted to the Pit-1 lineage

Tissue-specific expression of the Cre recombinase is a well-established genetic tool to analyze gene function in specific tissues and cell types. In this report, we describe the generation of a new transgenic line that expresses Cre under the control of the rat growth hormone releasing hormone receptor (rGhrhr) promoter. This promoter, chosen to target the anterior pituitary, drives cre-mediated recombination in cells of the Pit1 lineage, including somatotrophs, lactotrophs, and thyrotrophs. Cre activity is first detected at embryonic day 13.5, and gradually increases to reach high level expression by postnatal day 2. In addition to the pituitary, rGhrhr-cre expression was detected in vibrissae and in hair follicles of the proximal limb, but not in other tissues. The rGhrhr-cre line will be a valuable tool for the study of the development of the pituitary Pit1 lineage and for the study of tumorigenesis involving these cells.     

Taxonomic description of in situ bee pollen from the middle Eocene of Germany

The middle Eocene Messel and Eckfeld localities are renowned for their excellently preserved faunas and diverse floras. Here we describe for the first time pollen from insect-pollinated plants found in situ on well-preserved ancient bees using light and scanning electron microscopy. There have been 140 pollen types reported from Messel and 162 pollen types from Eckfeld. Here we document 23 pollen types, six from Messel and 18 from Eckfeld (one is shared). The taxa reported here are all pollinated by insects and mostly not recovered in the previously studied dispersed fossil pollen records. Typically, a single or two pollen types are found on each fossil bee specimen, the maximum number of distinct pollen types on a single individual is five. Only five of the 23 pollen types obtained are angiosperms of unknown affinity, the remainder cover a broad taxonomic range of angiosperm trees and include members of several major clades: monocots (1 pollen type), fabids (7), malvids (4), asterids (5) and other core eudicots (1). Seven types each can be assigned to individual genera or infrafamilial clades. Since bees visit only flowers in the relative vicinity of their habitat, the recovered pollen provides a unique insight into the autochthonous palaeo-flora. The coexistence of taxa such as Decodon, Elaeocarpus, Mortoniodendron and other Tilioideae, Mastixoideae, Olax, Pouteria and Nyssa confirms current views that diverse, thermophilic forests thrived at the Messel and Eckfeld localities, probably under a warm subtropical, fully humid climate. Our study calls for increased attention to pollen found in situ on pollen-harvesting insects such as bees, which can provide new insights on insect-pollinated plants and complement even detailed palaeo-palynological knowledge obtained mostly from pollen of wind-pollinated plants in the dispersed pollen record of sediments. In the case of Elaeocarpus, Mortoniodendron, Olax and Pouteria the pollen collected by the middle Eocene bees represent the earliest unambiguous records of their respective genera.     

版纳鱼螈侧线系统的结构

版纳鱼螈(Ichthyophis bannanica)是我国无足目的仅有代表,应用光镜和扫描电镜对版纳鱼螈的侧线系统进行形态学和组织学观察的研究表明:版纳鱼螈幼体表皮中的侧线器官有接受机械刺激的神经丘和电接受壶腹器官两种,神经丘包括表面神经丘和陷神经丘。侧线分布主要包括:头部的鼻侧线、眶上线、眶下线、眶后线、口侧线、下颌线、咽侧线、鳃孔上线和身体上的背侧线。侧线器官的分布密度、大小和凹陷深度明显与周围表皮的厚度和不同部位有关。幼体的侧线器官退化与鳃孔的退化同步,亚成体以后不保留侧线系统。版纳鱼螈的侧线分布和器官结构与其它无足类的大致相似,仅在眶上线和眶下线的器官分布上存在微小的差别     

苏云金芽胞杆菌幕虫亚种晶胞粘连现象与晶体蛋白基因cry26Aa所在质粒有关

苏云金芽胞杆菌幕虫亚种T02菌株的伴胞晶体在芽胞外壁内侧形成,呈现晶胞粘连的现象。在此菌株中克隆了cry26Aa和cry28Aa两个基因,并对晶胞粘连现象与质粒的相关性做了系统研究。通过消除幕虫亚种T02菌株的质粒,得到了仅消除cry26Aa所在质粒的菌株BMB1151和无质粒的菌株BMB1152。通过穿梭载体将cry26Aa和cry28Aa两个基因分别和同时转化无质粒突变株BMB1152并表达,形成的晶体与芽胞独立存在不能粘连,表明在幕虫亚种染色体背景下仅仅cry的表达不能形成晶胞粘连现象,从而推断晶胞粘连现象可能与幕虫亚种两个基因所在的质粒有关;进一步的研究发现将cry26Aa在仅消除cry26Aa所在质粒的突变株BMB1151中表达,形成的晶体与芽胞也分别独立存在不能粘连,从而进一步推断幕虫亚种晶胞粘连现象与cry26Aa所在质粒有关。