Aldolases of the lactic acid bacteria

Reciprocal qualitative and quantitative immunological experiments employing an anti-Pediococcus cerevisiae aldolase serum confirmed many of the interspecific relationships demonstrated previously among lactic acid bacteria with antisera prepared against the Streptococcus faecalis fructose diphosphate aldolase. The extent of immunological relatedness observed between the Lactobacillus and Pediococcus aldolases was markedly greater than that noted between Pediococcus and Streptococcus aldolases indicating that the pediococci share closer phylogenetic ties with the rod-shaped lactobacilli than with their spherical counterparts in the streptococci. In addition to confirming the existence of definitive, but distant, relationships between the lactic acid bacteria and certain gram positive nonsporeforming anaerobes, immunological cross-reactivity was also demonstrated between the pediococcal aldolases and those of Aerococcus viridans.This paper is dedicated with deepest appreciation to Prof. Roger Y. Stanier on the occasion of his 60th birthday in token of what his friendship and guidance have meant to me. — J. L.     

第六次北极科学考察海洋沉积物可培养细菌的多样性分析

【目的】研究北极海洋沉积物可培养细菌的菌种资源多样性。【方法】采用海水Zobell2216E培养基和涂布平板法对第六次北极科学考察获得的海洋沉积物开展细菌分离培养,通过16S rRNA基因系统发育分析了解可培养细菌的多样性。【结果】根据菌落形态特征,从40个站位的北极海洋沉积物样品中共分离并获得16S rRNA基因有效序列的细菌达445株;基于16S rRNA基因的相似性分析与系统发育研究结果表明,分离获得的细菌分属于细菌域的4个门、6个纲、13个目、28个科、49个属、91个种,其中γ-Proteobacteria占大多数;有12株与模式菌株的16S rRNA基因序列相似性小于97%,可能代表了6个潜在的细菌新物种;此次获得的细菌种类组成与以往第五次北极科考获得的相比,在属水平上差异较大。【结论】北极海洋沉积物中存在着丰富的微生物菌种资源,具有很多新型微生物仍未被发现,是亟待开发的微生物资源宝库。     

黄土高寒区典型植被类型土壤入渗特征及其影响因素

为了研究黄土高寒区典型植被在不同坡位下土壤入渗性能差异及其影响因素,采用恒定水头法测定了不同植被类型的土壤入渗过程,并分析了土壤孔隙状况、机械组成、水稳性团聚体等与渗透速率的相关性。结果表明:(1)初渗速率和稳渗速率均表现为青海云杉>祁连圆柏>华北落叶松>荒草地,且差异性显著;同一植被类型的土壤入渗速率沿坡面向下逐渐增大,但差异性不显著;(2)对不同植被类型的土壤入渗过程模拟发现Horton模型拟合效果最好,决定系数均在0.8以上,通用经验模型拟合精度较差,决定系数在0.614—0.982之间;(3)土壤入渗性能与孔隙状况、水稳性团聚体质量分数、有机质含量均有极显著相关性;>0.25 mm团聚体质量分数是影响稳渗速率的主要决策因素;总孔隙度是影响初渗速率的最主要的决策因素,而毛管孔隙度是主要的限制因子。为高寒地区土壤入渗模拟以及植被配置等提供了科学依据。     

黄土丘陵区人工柠条种植年限和坡位对土壤团聚体稳定性的影响

柠条(Caragana korshinskii Kom.)种植是黄土高原地区生态环境建设中重要的人工植被恢复措施。选择黄土丘陵区条带种植15、25和35年的柠条坡地,以荒草坡地为对照,运用Le Bissonnais法分析柠条种植不同年限和坡位对0—40 cm土层团聚体分布及其稳定性的影响。结果表明:长时间柠条种植对土壤团聚体稳定性的影响主要在0—20 cm土层;不同处理下土壤大团聚体(>0.25 mm)含量总体表现为柠条35年>柠条25年>柠条15年>荒草地,表明柠条种植年限增加促进了大团聚体的形成。从坡面尺度看,柠条平均重量直径整体表现为坡下>坡上>坡中;在上坡的柠条35年样地具有最大值(3.08 mm),但在下坡荒草地显著高于柠条林地(P<0.05)。基于相对消散指数和相对机械破碎指数,上中坡土壤团聚体均对消散作用和机械破碎作用较敏感,而下坡的下层土壤团聚体对破碎作用更敏感。冗余分析表明,土壤有机碳和粘粒含量与柠条平均重量直径呈显著正相关关系(P<0.05)。种植年限是影响土壤团聚体稳定性的主要因素,解释了30.4%的变异;其次是土层...     

海带配子体克隆中一株镰刀菌的分离鉴定

从海带配子体克隆中分离出一株真菌(菌株编号:059601016C),对其培养性状、形态特征和ITS基因进行研究分析。结果显示:059601016C真菌在PDA培养基上呈棉絮状生长,菌落背面颜色由白色变为深紫色。气生菌丝发达,高度可达5mm-7mm。小型分生孢子以链状或假头状着生于瓶状产孢细胞上,(5.0-10.5)μm×(1.2-2.5)μm。大型分生孢子镰刀状,略有弯曲,顶胞渐尖,2-5个隔膜,多3-4个隔膜。通过ITS基因序列同源性分析,该菌株与层出镰刀菌的相似性为100%。系统发育树的分析结果也表明该菌株与层出镰刀菌的亲缘关系最接近,因此将菌株059601016C鉴定为层出镰刀菌(Fusarium proliferatum Nirenberg)。在GenBank中申请的基因序列号为GU951805。     

苯酚的生物降解基因组成及其调控机制

苯酚的生物降解受多组分的降解基因控制,形成邻位和间位等不同的代谢途径.结合部分实验结果,介绍了邻位和间位代谢系统的基因组成及其作用机制等方面的研究进展,讨论了调节基因在苯酚降解菌中的作用和不同因素对苯酚降解的影响.     

具抗肿瘤活性放线菌菌株YIM 90022的分离和系统发育分析

从青海盐碱土壤样品中分离到一株兼性嗜碱放线菌YIM 90022,该菌株的发酵产物具有很强的体外抗胃癌、肺癌、乳腺癌、皮肤癌、肾癌和子宫癌肿瘤细胞株活性。基于16S rRNA基因序列的系统发育分析表明,菌株YIM90022属于拟诺卡氏属(Nocardiopsis)的成员,与该属的4个有效发表种N.exhalansDSM 44407T,N.prasinaDSM43845T,N.metallicusDSM 44598T和N.listeriDSM 40297T系统发育关系最密切,与其分别以98.8%,98.5%,98.4%和97.8%的16S rRNA基因核苷酸序列相似性聚为一簇。但菌株YIM 90022不与这4个有效种中任何一个单独相聚,形成了一个独立亚分枝。结合形态特征、生理生化特性、细胞化学分类特征,以及rep-PCR基因指纹分析等方面的研究结果,菌株YIM 90022可能为拟诺卡氏菌属的一个潜在新种。菌株YIM 90022在大多数培养基上生长良好,气生菌丝和基内菌丝丰富,在酵母膏麦芽膏琼脂、燕麦片琼脂等培养基中产生可溶性色素。生长pH范围6.0~12.0,最适pH 8.5;能在含0~15%NaCl(W/V)的培养基上生长。     

Reversible unfolding of the severe acute respiratory syndrome coronavirus main protease in guanidinium chloride

Chemical denaturant sensitivity of the dimeric main protease from severe acute respiratory syndrome (SARS) coronavirus to guanidinium chloride was examined in terms of fluorescence spectroscopy, circular dichroism, analytical ultracentrifuge, and enzyme activity change. The dimeric enzyme dissociated at guanidinium chloride concentration of <0.4 M, at which the enzymatic activity loss showed close correlation with the subunit dissociation. Further increase in guanidinium chloride induced a reversible biphasic unfolding of the enzyme. The unfolding of the C-terminal domain-truncated enzyme, on the other hand, followed a monophasic unfolding curve. Different mutants of the full-length protease (W31 and W207/W218), with tryptophanyl residue(s) mutated to phenylalanine at the C-terminal or N-terminal domain, respectively, were constructed. Unfolding curves of these mutants were monophasic but corresponded to the first and second phases of the protease, respectively. The unfolding intermediate of the protease thus represented a folded C-terminal domain but an unfolded N-terminal domain, which is enzymatically inactive due to loss of regulatory properties. The various enzyme forms were characterized in terms of hydrophobicity and size-and-shape distributions. We provide direct evidence for the functional role of C-terminal domain in stabilization of the catalytic N-terminal domain of SARS coronavirus main protease.