Diversity of antagonistic bacteria isolated from medicinal plant Peganum harmala L.

The antimicrobial activity of plant extract of Peganum harmala, a medicinal plant has been studied already. However, knowledge about bacterial diversity associated with different parts of host plant antagonistic to different human pathogenic bacteria is limited. In this study, bacteria were isolated from root, leaf and fruit of plant. Among 188 bacterial isolates isolated from different parts of the plant only 24 were found to be active against different pathogenic bacteria i.e. Escherichia coli, Methicillin-resistant Staphylococcus aureus (MRSA), Enterococcus faecium, Enterococcus faecalis and Pseudomonas aeruginosa. These active bacterial isolates were identified on the basis of 16S rRNA gene analysis. Total population of bacteria isolated from plant was high in root, following leaf and fruit. Antagonistic bacteria were also more abundant in root as compared to leaf and fruit. Two isolates (EA5 and EA18) exhibited antagonistic activity against most of the targeted pathogenic bacteria mentioned above. Some isolates showed strong inhibition for one targeted pathogenic bacterium while weak or no inhibition for others. Most of the antagonistic isolates were active against MRSA, following E. faecium, P. aeruginosa, E. coli and E. faecalis. Taken together, our results show that medicinal plants are good source of antagonistic bacteria having inhibitory effect against clinical bacterial pathogens.     

Horizontal Gene Transfer of “Prototype” Nramp in Bacteria

Eukaryotic Nramp genes encode divalent metal ion permeases important for nutrition and resistance to microbial infection. Bacterial homologs encode proton-dependent transporters of manganese (MntH), and other divalent metal ions. Bacterial MntH were classified in three homology groups (A, B, C) and MntH C further subdivided in C, C, C. The proteins from C. tepidum (MntH B) and E. faecalis (MntH C1, 2), divergent in sequence and hydropathy profile, conferred increased metal sensitivity when expressed in E. coli, suggesting conservation of divalent metal transport function in MntH B and C. Several genomic evidence suggest horizontal gene transfer (HGT) of mntH C genes: (i) The enterobacteria Wigglesworthia mntH C gene is linked to an Asn t-RNA, and its sequence most conserved with Gram positive bacteria homologs; (ii) all the C genes identified in oral streptococcaceae are associated with different potentially mobile DNA elements; (iii) Lactococcus lactis and Burkholderia mallei genomes contain an mntH gene prematurely terminated and a novel full-length mntH C gene; (iv) remarkable sequence relatedness between the unicellular alga C. reinhardtii prototype Nramp and some MntH C (e.g., Nostoc spp., Listeria spp.) suggests HGT between Eukarya and Bacteria. Other prototype Nramp genes (intronless, encoding proteins strongly conserved with MntH A and B proteins) identified in invertebrates represent a possible source for transfer of Nramp genes toward opportunistic bacteria. This study demonstrates complex evolution of MntH in Bacteria. It is proposed that prototype Nramp are ancestors of bacterial MntH C proteins, which could facilitate bacterial infection. Equally contributing authors (Etienne Richer and Pascal Courville).     

Integration of research and management in optimizing multiple uses of reservoirs: the experience in South America and Brazilian case studies

The construction of large reservoirs in South America and particularly in Brazil has intensified within the last 50 years. Built up primarily for hydroelectricity production, these artificial ecosystems now serve purposes such as: water storage for public use; fisheries and aquaculture; recreation; tourism, and irrigation. These artificial ecosystems were also built up with the purpose of enhancing the regional development. These activities produce multiple impacts among which are eutrophication, a serious problems with various ecological, economic, and social consequences. Basic studies on reservoirs have identified their main ecological characteristics and described some of their fundamental mechanisms of functioning. This information cover: factors involved in reservoir complexity, such as spatial scale, vertical and horizontal heterogeneity, temporal variation at several time scales and, in some cases, watershed/reservoir relationships, and the impact of non-point and point sources of nutrients. Numerous studies have been dedicated to describing aquatic biota, its relationship with environmental factors, and the impacts of degradation/pollution/ eutrophication on biodiversity. Research priorities have been established mainly by limnologists in response to needs identified by environmental impact assessment. Due to the pressure of multiple uses, population growth, and economic factors, aquatic scientists now face a number of questions being posed by managers and engineers. These questions relate to a wide range of practical problems, the solutions to which depend on accumulated data related to the structural complexities and function mechanisms previously referred to. These problems can be divided into three main groups: (i) eutrophication processes and their characteristics, and water quality control; (ii) impact of fisheries, aquaculture, and exotic species introduction on the biota and the water quality; (iii) sustainable development of reservoirs and optimization management of their multiple uses. Predictive capabilities required in the face of these problems should be based on modeling development and intensive use of data-bases resulting from long-term studies on reservoirs. The predictions thus made possible would involve economic factors and the costs of recovery of eutrophic reservoirs. The experience of reservoir research and management in South America and in Brazil is, probably part of a world wide tendency on reservoir research and development with the aim to optimize multiple uses. Based on the cooperation of limnologists and engineers, ecosystem management models must eventually be applied at the watershed / reservoir level, where demands on the part of managers and decision makers will certainly promote a predictive, integrated, and adaptive approach,based on fundamental research.     

Differences in Variation of Human Immunodeficiency Virus Type 1 Sequences from Henan and Shanghai Regions of China

Illegally paid blood donation was a risk factor for HIV acquisition exclusively in Henan and Hubei Provinces of China,and not in Shanghai.Nucleotide sequences in the gag and env genes of HIV-1 were compared between isolates from Henan and Shanghai regions of China to test whether an expected higher degree of a common source of infections from this unique blood donation transmission risk would be evident as decreased variation among Henan isolates in an exploratory cross-sectional analysis.Among 38 isolates studied,23 of 23(100%)from Henan and 8 of 15(54%)from Shanghai were subtype B.In addition,fewer sequence differences were found in gp41 of subtype B isolates from Henan than from Shanghai isolates.Further studies with additional controls are therefore warranted to confirm the role of the degree of a common source of infections in differences in HIV variation across populations.     

中国木兰科各属次生木质部的解剖特征及系统演化

综述了中国木兰科10属的次生木质部解剖学特征,包括导管分子,纤维管胞和木射线。同时,进一步讨论了其系统演化。这10属分为两亚科,即:木兰亚科(Magnoliodeae),包括木兰族(Magnolieae)和含笑族(Michelieae Law),木兰族有木莲属(Maglietia Bl.)、华盖木属(Manglietiastrum Law)、木兰属(Magnolia L.)、拟单性木兰属(Parakmeria Hu et Cheng)、单性木兰属[Kmeria(Pierre) Dandy]、长蕊木兰属(Alcimandra Dandy)共六属;含笑族有含笑属(Michelia L.)、合果木属(Paramichelia Hu)、观光木属(Tsoongiodendron Chun)共三属。鹅掌楸亚科[Liriodendroideae(Bark) Law],仅鹅掌楸属(Liriodendron L.)一属。大量的木材解剖学研究表明,木兰科的原始性很明显,但也有一些进化特征。可以通过属间的差别来分析本科的系统演化。木兰科的系统演化可简单总结为:木兰亚科[木兰族(木莲属,华盖木属,拟单性木兰属,单性木兰属→木兰属,长蕊木兰属)→含笑族]→鹅掌楸亚科。     

昆虫神经肽研究进展

近年来鉴定了化学结构的昆虫神经肽数目呈快速上升趋势, 家蚕滞育激素和性信息素合成激活肽被分离纯化.三种近年出现的研究方法对寻找新型昆虫神经肽起到重要作用,已经成功地鉴定了数个新型神经肽.昆虫神经肽cDNA或基因组DNA克隆显示了新的结构信息和神经肽间的相互关系.     

Parallel evolution in radiation ofOhomopterus ground beetles inferred from mitochondrial ND5 gene sequences

Molecular phylogenetic analyses using mitochondrial NADH dehydrogenase subunit 5 (ND5) gene sequences representing all 15 species and the majority of subspecies or races of theOhomopterus ground beetles from all over the Japanese archipelago have uncovered a remarkable evolutionary history. Clustering of the species in the molecular phylogenetic tree is linked to their geographic distribution and does not correlate with morphological characters. Taxonomically the same species or the members belonging to the same species-group fall out in more than two different places on the ND5 tree. Evidence has been presented against a possible participation of ancestral polymorphism and random lineage sorting or of hybrid individuals for the observed distribution of mitochondrial DNA haplotypes. The most plausible explanation of our results is that parallel evolution took place in different lineages. Most notably,O. dehaanii, O. yaconinus, andO. japonicus in a lineage reveal almost identical morphology with those of the same species (or subspecies) but belonging to the phylogenetically remote lineages.The nucleotide sequence data reported in this paper will appear in the DDBJ, EMBL, and GenBank nucleotide sequence databases with accession numbers D50711-DD-50733 and D87131-D87186.     

Complete mitochondrial genome of the Himalayan serow (Capricornis thar) and its phylogenetic status within the genus Capricornis

The genus Capricornis (Caprinae, Bovidae) includes six species, i.e., Capriconis sumatraensis, Capricornis swinhoei, Capricornis crispus, Capricornis rubidus, Capricornis milneedwardsii and Capricornis thar. Based on morphological, anatomical and physiological evidence, the Himalayan serow (C. thar), which is distributed in the mountain regions of the Tibetan Plateau and adjacent areas, is generally classified as a species of the genus Capricornis. However, considering the lack of molecular phylogenetic evidence, a heated controversy still exists over the taxonomic position of the Himalayan serow. To determine the phylogenetic status of C. thar, we sequenced the complete mitochondrial genome (mtDNA) of one Himalayan serow using the polymerase chain reaction (PCR) technique. Then, we constructed a molecular phylogenetic tree of the genus Capricornis and its related species in the Caprinae subfamily based on maximum likelihood and Bayesian interference methods. The results reflect that the structural characteristics, nucleotide content and codon usage bias of the mitochondrial genome of the Himalayan serow were similar to those of other serows. A phylogenetic analysis using two rRNA genes and 12 encoded protein-coding genes indicated that C. thar is clustered within the C. milneedwardsii clade, which is a sister group of C. sumatraensis. The present study provides useful information about the evolution of the Himalayan serow, which will be essential for conservation genetic studies.     

Phylogenetic analysis of epiphytic marine bacteria on Hole-Rotten diseased sporophytes of <Emphasis Type="Italic">Laminaria japonica</Emphasis>

During an occurrence of Hole-Rotten Disease of Laminaria japonica in a cultivating farm in Ma Shan Shandong province, China, 42 Gram-negative epiphytic marine bacteria were isolated and purified on Zobell 2216E marine agar medium. Morphological and biochemical characteristics of each isolated bacterium were studied, and molecular identification of bacterial strains was conducted with polymerase chain reaction amplification to 16S rRNA gene sequence analysis. Based on nearly full length of 16S rRNA gene sequence analysis, the isolated strains were bacteria that belong to genus Pseudoalteromonas, Vibrio, Halomonas and Bacillus. The percentage of each group was 61.9%, 28.6%, 7.1% and 2.4% respectively. The results of pathogenicity assay showed that 12 strains could cause the disease symptoms in sporophytes of L. japonica. They belonged to the genera Pseudoalteromonas, Vibrio and Halomonas with 58.3%, 33.3%, 8.3% respectively. The results suggest that these bacteria are the dominant marine bacteria on diseased sporophytes of L. japonica and may be the potential pathogenic bacteria associated with Hole-Rotten Disease of L. japonica.     

Co-occurrence of tree species at fine spatial scale in a woodland cerrado,southeastern Brazil

Species co-occurrence at fine spatial scales is expected to be nonrandom in relation to species phylogenetic relatedness and functional similarity. On the one hand, closely related species that occur together and experience similar environmental conditions are likely to share phenotypic traits due to the process of environmental filtering. On the other hand, species that are too similar are unlikely to co-occur due to competitive exclusion. We surveyed a woodland cerrado, southeastern Brazil, to test whether co-occurrence in tree species shows functional or phylogenetic structuring at fine spatial scale. Searching for correlations between an index of species co-occurrence and both functional trait differences and phylogenetic distances, we provided evidence for a predominant role of environment filters in determining the co-occurrence of functionally similar tree species in cerrado. However, we did not find any effect of phylogenetic relatedness on tree species co-occurrence. We suggest that the phylogenetic relatedness of co-occurring cerrado tree species did not present a pattern, because the species functional traits were randomly distributed on the phylogeny. Thus, phylogenetic relatedness and functional similarity do not seem to limit the co-occurrence at fine spatial scale of cerrado tree species.