Nitric oxide reacts with the ferryl-oxo catalytic intermediate of the CuB-lacking cytochrome bd terminal oxidase

Cytochrome bd is a bacterial respiratory oxidase carrying three hemes but no copper. We show that nitric oxide (NO) reacts with the intermediate F of cytochrome bd from Azotobacter vinelandii: (i) with a 1:1 stoichiometry, (ii) rapidly (k=1.2 +/- 0.1 x 10(5)M(-1)s(-1) at 20 degrees C), and (iii) yielding the oxidized enzyme with nitrite bound to heme d at the active site. Unexpectedly, the NO reaction mechanism of this catalytic intermediate in the Cu(B)-lacking cytochrome bd appears similar to that of beef heart cytochrome c oxidase, where Cu(B) was proposed to play a key role.     

The cucurbit images (1515-1518) of the Villa Farnesina, Rome

BACKGROUND: The gorgeous frescoes organized by the master Renaissance painter Raphael Sanzio (1483-1520) and illustrating the heavenly adventures of Cupid and Psyche were painted between 1515 and 1518 to decorate the Roman villa (now known as the Villa Farnesina) of the wealthy Sienese banker Agostino Chigi (1466-1520). Surrounding these paintings are festoons of fruits, vegetables and flowers painted by Giovanni Martini da Udine (1487-1564), which include over 170 species of plants. A deconstruction and collation of the cucurbit images in the festoons makes it possible to evaluate the genetic diversity of cucurbits in Renaissance Italy 500 years ago. FINDINGS: The festoons contain six species of Old World cucurbits, Citrullus lanatus (watermelon), Cucumis melo (melon), Cucumis sativus (cucumber), Ecballium elaterium (squirting cucumber), Lagenaria siceraria (bottle gourd) and Momordica balsamina (balsam apple), and two or three species of New World cucurbits, Cucurbita maxima, C. pepo and, perhaps, C. moschata (pumpkin, squash, gourd). The images of C. maxima are the first illustrations of this species in Europe.     

The mitochondrial TOM complex modulates bax-induced apoptosis in Drosophila

Bax is a pro-apoptotic member of the Bcl-2 family proteins involved in the release of apoptogenic factors from mitochondria to the cytosol. Recently, it has been shown both in mammals and yeast that Bax insertion in the mitochondrial outer membrane involves at least two distinct mechanisms, one of which uses the TOM complex. Here, we show that in Drosophila, heterozygous loss of function mutations of Tom22 or Tom70, two receptors of the TOM complex, attenuates bax-induced phenotypes in vivo. These results argue that the TOM complex may be used as a mitochondrial Bax receptor in Drosophila.     

New petrified gymnosperms from the Permian of Maranhão (Pedra de Fogo Formation), Brazil: Ductolobatopitys nov. gen. and Kaokoxylon

Continuing the study of petrified gymnosperm trunks recovered from the Pedra de Fogo Formation, we identify here two new taxa from the Permian deposits of the Parnaíba Basin, northeastern Brazil. One taxon is an endemic form named Ductolobatopitys mussae Conceição, Neregato et Iannuzzi, nov. gen., nov. sp., characterized by solenoid, lobed and non-septate heterocellular pith, cauline bundles with endarch maturation, and secondary xylem with araucarian radial pitting on the tracheid walls. The other form is assigned to the genus Kaokoxylon, which has been recorded from most of Gondwana, including the Parnaíba Basin, but is recorded for the first time from the Pedra de Fogo Formation with the new species Kaokoxylon brasiliensis. It is characterized by solid, non-septate heterocellular pith with sclerenchyma cells, endarch cauline bundles, and uni-to triseriate radial pitting on the walls of the tracheids. The sedimentological interpretations of the outcrops where the fossils were collected indicate that these plants lived on the shores of large continental lakes, with relatively high humidity but possibly periods of drought. These inferences are supported by growth interruptions in the secondary xylem, the presence of calamitalean and tree-fern stems, and microbialites that crop in the same area. These new finds not only increase the known diversity of the flora in the Pedra de Fogo Formation, but also provide more accurate information for understanding the floristic elements that formed the subtropical flora during the Cisuralian in this basin in Western Gondwana.     

Anacroneuria (Plecoptera: Perlidae) from Serra da Mesa,Northern Goiás State,Brazil, with Descriptions of New Species

Anacroneuria (Plecoptera: Perlidae) from the area of the Serra da Mesa reservoir, northern Goiás State, Brazil was studied. A. pastaza (Stark, 2001) is recorded and two new species (A. brandaoi and A. tinga) are described.     

One-hit stochastic decline in a mechanochemical model of cytoskeleton-induced neuron death II: transition state metastability

This is the second of two papers in which we study a mathematical model of cytoskeleton-induced neuron death. Recent evidence indicates that aggravated assembly or destruction of the cytoskeleton can trigger programmed death in neurons, by mechanisms as yet poorly understood. In our model, assembly control of the neuronal cytoskeleton interacts with both cellular stress levels and cytosolic free radical concentrations to trigger neurodegeneration. This trigger mechanism is further modulated by a diffusible toxic factor released from dying neurons. In the companion report we established that the model relates the observed general patterns of neuron decline to specific scales of cytoskeleton reorganization and cell-cell interaction strength. In this paper we study the transit of neurons through states intermediate between initial viability and cell death in our model. We find that the stochastic flow of neuron fate, from viability to cell death, self-organizes into two distinct temporal phases. There is a rapid relaxation of the initial neuron population to a more disordered phase that is long-lived, or metastable, with respect to the time scales of change in single cells. Strikingly, cellular egress from this metastable phase follows the one-hit kinetic pattern of exponential decline now established as a principal hallmark of cell death in neurodegenerative disorders. Intermediate state metastability may therefore be an important element in the systems biology of one-hit neurodegeneration.     

Modeling species-specific diacylglycerol dynamics in the RAW 264.7 macrophage

A mathematical model of the G protein signaling pathway in RAW 264.7 macrophages downstream of P2Y₆ receptors activated by the ubiquitous signaling nucleotide uridine 5’-diphosphate is developed. The model, which is based on time-course measurements of inositol trisphosphate, cytosolic calcium, and diacylglycerol, focuses particularly on differential dynamics of multiple chemical species of diacylglycerol. When using the canonical pathway representation, the model predicted that key interactions were missing from the current network structure. Indeed, the model suggested that accurate depiction of experimental observations required an additional branch to the signaling pathway. An intracellular pool of diacylglycerol is immediately phosphorylated upon stimulation of an extracellular receptor for uridine 5’-diphosphate and subsequently used to aid replenishment of phosphatidylinositol. As a result of sensitivity analysis of the model parameters, key predictions can be made regarding which of these parameters are the most sensitive to perturbations and are therefore most responsible for output uncertainty.     

Medieval oak chronology from Klaipėda,Lithuania

Klaipėda is a town in western Lithuania on the Baltic Sea coast. Oak timber was actively used to construct buildings in this town until the 17th century. Archaeological investigations began in Klaipėda’s old town in 1979, but it has not been possible to use oak timbers for dating due to the lack of regional chronologies. The goal of this study was to fill this gap by developing a well-replicated oak chronology from timber collected in Klaipėda between 1979 and 1987. The resulting oak chronology from Klaipėda spans 306 years from 1247 to 1552 and includes 62 oak timber cross-sections. The study suggests that the timber was felled in the same local woodland, and that tree-ring widths series from Klaipėda are temperature-sensitive. The negative pointer years mostly coincide with negative anomalies of reconstructed April‒September temperature from elsewhere in Europe. The constructed chronology was compared with local chronologies (Vilquro, Smarhoń, Gdańsk) and with oak chronologies made from imported oak timber of southeast Baltic origin (Baltic 1–3, Dutch). We assessed whether it is possible to determine the origins of the Baltic 1, Baltic 3 and Dutch oak chronologies compiled from imported timber. Based on available chronologies, it could be hypothesised that Baltic 1 and Dutch chronologies are originated from western Lithuania and Baltic 3 from eastern Lithuania.     

石灰和EM处理条件下土壤动物群落在落叶分解中的变化

2003年6月至2005年10月,用石灰和EM处理改变土壤微酸性特性和微生物活性,采用网袋分解法对大兴安岭地区土壤动物群落结构在落叶分解过程中的动态变化进行了研究。结果如下:(1) 土壤动物群落个体数、类群数和DG指数仍表现为季节波动性,气候因子是影响研究区土壤动物群落长期动态变化的重要因素,石灰和EM处理未改变这种规律。(2)处理条件下土壤动物在落叶分解过程中仍具有阶段性特征,且各类群集聚时间有所差异。(3) CCA排序分析表明,土壤pH值和有机质是影响土壤动物群落动态变化的重要因素,中气门亚目、前气门亚目、节跳虫科、甲螨亚目、绫跳虫科、山跳虫科、棘跳虫科、鳞跳虫科和石蜈蚣目对土壤pH值和有机质变化具有较强的适应能力。