Spatial structure of hierarchical groups: testing for processes of aggregation,clustering, and spatial centrality in crayfish (Orconectes rusticus)

Competing group members tend to arrange in a social order that governs who will likely submit to whom. In many species the spatial distribution of individuals often reflects social status: dominants tend to occupy central locations while subordinates are often found along the group's periphery. This article explores the emergence of spatial consequences as a result of social rank differentiation. Rather than orienting centripetally, the movements of crayfish (Orconectes rusticus) primarily indicated a tendency to remain close to arena walls. Spatial locations were affected by the location of group members; but, rather than actively aggregating or clustering, individuals maintained a minimum distance. Previously established social rank did not affect spatial distributions. High population densities in the field are likely attributed to habitat constraints, rather than any social or centripetal tendencies of individual crayfish.     

中国菌物分类学和多样性研究的历史与现状概况

我国菌物分类学研究始于20世纪初,经过百余年的不断探索和发展,取得了丰硕的成果,并逐渐走进世界前列。本研究通过对世界菌物名称信息库Fungal Names进行数据统计,对发现自中国的菌物新物种和中国学者发表菌物新分类单元等数据开展分析,从中揭示中国菌物分类学的历史和发展趋势。过去,一共有2 214位中国学者参与发表了15 626个菌物新分类单元,包括 3个新纲、27个新目及亚目、117个新科及亚科、769个新属及亚属、11 100个新种、322个新种下单元和3 288个新组合。在全球已知的菌物物种中,自中国发现的新物种有10 233种,隶属于 3界13门44纲174目572科2 379属,占全球已知物种多样性的6.84%,居世界第二位。地理分布上,我国西南地区(云南、四川、贵州、西藏)和低纬度的热带、亚热带地区(中国台湾、广东)发现的新物种最多。根据每年发现的新分类单元数量趋势和命名作者的构成,可将中国菌物分类学的发展历史分为五个阶段：外人在华采菌及研究(1750s-1929)、中国菌物分类学起步(1930-1949)、新中国菌物分类学早期发展(1950-1977)、全国性菌物标本采集与研究(1978-2010)、走进世界前列(2011至今)。本研究对每个发展时期的分类学概况和重要历史事件进行了总结和回顾,通过上述综述性研究,有助于系统地了解中国菌物分类学不同阶段的发展趋势和研究概况,为学科当下和未来的发展提供参考。     

不同杂种优势群玉米籽粒脱水速率分析

研究不同杂种优势群玉米自交系籽粒脱水速率的特性,筛选脱水速率快的自交系,为选育适应机械化作业的玉米杂交种提供借鉴。本试验采用烘干测定173份玉米自交系的籽粒的脱水速率及其相关性状,利用覆盖玉米全基因组的210对SSR标记对实验材料进行全基因组扫描,通过Structure V2.3.4 软件揭示其群体结构。对不同杂种优势群平均籽粒脱水速率进行方差分析,并筛选出各个群中籽粒灌浆速率快的自交系。研究结果如下：籽粒脱水速率在不同自交系间存在显著差异,与苞叶、穗轴及籽粒的含水率等性状间存在显著相关性。试验共筛选到脱水速率大于1%的自交系20个;授粉后40天时籽粒的含水率低于21%的自交系10个。参试自交系分成P、旅大红骨、瑞德、兰卡斯特和塘四平头5个杂种优势群;授粉后40天脱水速率依次是Reid群0.92%、Lancaster群0.85%、旅大红骨群0.82%、混合群0.80%、P群0.76%、塘四平头群0.56%。     

Involvement of polycomb-group genes in establishing HoxD temporal colinearity

Temporal colinearity in mouse HoxD is dependent on repressive activity of sequences within the 5' end of the complex. We show that a 5-kb DNA fragment from this region represses transgenes when combined in mouse as well as in Drosophila melanogaster. Moreover, repressive activity in Drosophila depends on some members of the Polycomb-group (PcG) genes, for example, extra sex combs. We also showed direct association of these factors with the repressive fragment, both in transgenic flies and in the context of the native mouse HoxD complex. These results suggest that the global repressive region of the HoxD complex functions in two very different species and that some PcG genes are involved in establishing the early repressive state of the HoxD complex, thus contributing to temporal colinearity.     

Interpretability of bi-level variable selection methods

Variable selection is usually performed to increase interpretability, as sparser models are easier to understand than full models. However, a focus on sparsity is not always suitable, for example, when features are related due to contextual similarities or high correlations. Here, it may be more appropriate to identify groups and their predictive members, a task that can be accomplished with bi-level selection procedures. To investigate whether such techniques lead to increased interpretability, group exponential LASSO (GEL), sparse group LASSO (SGL), composite minimax concave penalty (cMCP), and least absolute shrinkage, and selection operator (LASSO) as reference methods were used to select predictors in time-to-event, regression, and classification tasks in bootstrap samples from a cohort of 1001 patients. Different groupings based on prior knowledge, correlation structure, and random assignment were compared in terms of selection relevance, group consistency, and collinearity tolerance. The results show that bi-level selection methods are superior to LASSO in all criteria. The cMCP demonstrated superiority in selection relevance, while SGL was convincing in group consistency. An all-round capacity was achieved by GEL: the approach jointly selected correlated and content-related predictors while maintaining high selection relevance. This method seems recommendable when variables are grouped, and interpretation is of primary interest.     

单核细胞趋化蛋白-1、高迁移率族蛋白B1与溃疡性结肠炎患者肠道菌群变化的相关性

目的 探讨单核细胞趋化蛋白-1（MCP-1）、高迁移率族蛋白B1（HMGB1）与溃疡性结肠炎（UC）患者肠道菌群变化的相关性。方法 选取2016年9月‒2018年1月遂宁市中心医院收治的98例UC患者资料,根据Mayo评分系统将UC患者分为活动期组（n=50）和缓解期组（n=48）。选取同期进行体检的健康人50例作为对照组。比较各组间肠道菌群,血清MCP-1、HMGB1水平,并进行Pearson相关分析。结果 活动期组患者肠道乳杆菌、双歧杆菌含量[（5.34±0.87）、（5.81±0.83）CFU/g]显著低于缓解期组和对照组[（8.07±0.86）、（8.35±0.88）CFU/g;（8.13±0.91）、（8.46±0.95）CFU/g]（F=12.035,P0.05）。活动期组和缓解期组患者血清MCP-1、HMGB1水平[（267.42±23.51）、（21.35±2.26）ng/mL;（188.15±20.73）、（6.28±1.38）ng/mL]显著高于对照组[（106.38±15.92）、（2.13±0.41）ng/mL]（F=84.163,P<0.001;F=25.386,P<0.001）;活动期组患者血清MCP-1、HMGB1水平[（267.42±23.51）、（21.35±2.26）ng/mL]显著高于缓解期组[（188.15±20.73）、（6.28±1.38）ng/mL]（t=17.676、39.641,均P<0.05）。经过Pearson相关性分析,MCP-1、HMGB1与UC患者乳杆菌、双歧杆菌含量呈负相关（r=‒0.715、‒0.659,r=‒0.703、‒0.614,均P<0.001）,与大肠埃希菌、肠球菌、拟杆菌含量呈正相关（r=0.783、0.702,r=0.762、0.735,r=0.653、0.612,均P<0.001）。结论 MCP-1、HMGB1作为促炎因子可介导肠黏膜炎性反应,引起UC患者肠道菌群的紊乱。     

The use of 2,2′‐dithiobis(5‐nitropyridine) (DTNP) for deprotection and diselenide formation in protected selenocysteine‐containing peptides

In contrast to the large number of sidechain protecting groups available for cysteine derivatives in solid phase peptide synthesis, there is a striking paucity of analogous selenocysteine Se‐protecting groups in the literature. However, the growing interest in selenocysteine‐containing peptides and proteins requires a corresponding increase in availability of synthetic routes into these target molecules. It therefore becomes important to design new sidechain protection strategies for selenocysteine as well as multiple and novel deprotection chemistry for their removal. In this paper, we outline the synthesis of two new Fmoc selenocysteine derivatives [Fmoc‐Sec(Meb) and Fmoc‐Sec(Bzl)] to accompany the commercially available Fmoc‐Sec(Mob) derivative and incorporate them into two model peptides. Sec‐deprotection assays were carried out on these peptides using 2,2′‐dithiobis(5‐nitropyridine) (DTNP) conditions previously described by our group. The deprotective methodology was further evaluated as to its suitability towards mediating concurrent diselenide formation in oxytocin‐templated target peptides. Sec(Mob) and Sec(Meb) were found to be extremely labile to the DTNP conditions whether in the presence or absence of thioanisole, whereas Sec(Bzl) was robust to DTNP in the absence of thioanisole but quite labile in its presence. In multiple Sec‐containing model peptides, it was shown that bis‐Sec(Mob)‐containing systems spontaneously cyclize to the diselenide using 1 eq DTNP, whereas bis‐Sec(Meb) and Sec(Bzl) models required additional manipulation to induce cyclization. Copyright © 2012 European Peptide Society and John Wiley & Sons, Ltd.     

炭疽菌不利用硝酸盐突变体的筛选及鉴定

将从杉木和大叶黄杨上分离获得的８个胶孢炭疽菌（Colletoctrichum gloeosporioides）分离物培养在含氯酸钾的平板上,得到快速生长抗氯酸钾的不利用硝酸盐的突变体(Nit)。所有的突变体经鉴定分属于３种表现型,即硝酸还原酶结构位点（nit１）,硝酸盐同化途径的专化调节位点（nit３）,和钼辅因位点（nitM）。分离物发生突变的频率随氯酸钾浓度的增加而提高,并且不同的氮源在一定程度上会影响突变表型种类。除ＣＣ３外,所有的分离物都是自身亲和的,即不同表型的突变体能遗传互补,其