Extraction algorithms for cortical control of arm prosthetics

Now that recordings of multiple, individual action potentials are being made with chronic electrodes, it seems that previous work showing simple encoding of movement parameters in these spike trains can be used as a real-time control signal for prosthetic arms. Efficient extraction algorithms can compensate for the limited ensemble sample acquired with this emerging technology.     

When stable-stage equilibrium is unlikely: integrating transient population dynamics improves asymptotic methods

Background and Aims Evaluation of population projection matrices (PPMs) that are focused on asymptotically based properties of populations is a commonly used approach to evaluate projected dynamics of managed populations. Recently, a set of tools for evaluating the properties of transient dynamics has been expanded to evaluate PPMs and to consider the dynamics of populations prior to attaining the stable-stage distribution, a state that may never be achieved in disturbed or otherwise ephemeral habitats or persistently small populations. This study re-evaluates data for a tropical orchid and examines the value of including such analyses in an integrative approach.Methods Six small populations of Lepanthes rubripetala were used as a model system and the R software package popdemo was used to produce estimates of the indices for the asymptotic growth rate (lambda), sensitivities, reactivity, first-time step attenuation, maximum amplification, maximum attenuation, maximal inertia and maximal attenuation. The response in lambda to perturbations of demographic parameters using transfer functions and multiple perturbations on growth, stasis and fecundity were also determined. The results were compared with previously published asymptotic indices.Key Results It was found that combining asymptotic and transient dynamics expands the understanding of possible population changes. Comparison of the predicted density from reactivity and first-time step attenuation with the observed change in population size in two orchid populations showed that the observed density was within the predicted range. However, transfer function analysis suggests that the traditional approach of measuring perturbation of growth rates and persistence (inertia) may be misleading and is likely to result in erroneous management decisions.Conclusions Based on the results, an integrative approach is recommended using traditional PPMs (asymptotic processes) with an evaluation of the diversity of dynamics that may arise when populations are not at a stable-stage distribution (transient processes). This method is preferable for designing rapid and efficient interventions after disturbances, and for developing strategies to establish new populations.     

What is multispecies MSY? A worked example from the North Sea

The concept of an optimum yield at intermediate levels of fishing (the so called maximum sustainable yield or MSY) has been with us since the 1930s and is now enshrined in legislation as a key objective of fisheries management. The concept seems intuitively reasonable and is readily applicable to a single stock treated in isolation and assuming a constant environment. However, translating this concept into a mixed and multispecies fishery, where there are complex trade-offs between fleets and stocks and in general no simple optimum solution, has been problematic. Here I introduce a framework for thinking about multispecies MSY in terms of an integrated risk of stock depletion and expected long-term yield. Within this framework I consider the performance of a set of simple harvest control rules based upon a single-limit fishing mortality rate (F) which is common to all stocks and a target biomass which is a set fraction of a stock's virgin biomass. Using a multispecies management strategy evaluation, I compare expected outcomes for a set of these harvest control rules with alternative scenarios, in which each stock has its own F based on the assessment process. I find that the simple framework can produce outcomes that are similar to those from the more sophisticated estimates of F. I therefore conclude that achieving multispecies MSY may depend more upon setting reasonable biomass targets and faithfully applying a harvest control rule approach rather than determining the best possible Fs for each stock.     

Effects of low-level jet aircraft noise on the behaviour of nesting osprey

1. Nesting osprey Pandion haliaetus L. were exposed to controlled low-level CF-18 jet aircraft overflights along the Naskaupi River, Labrador, Canada, during 1995. Jet aircraft flew near five nests at distances ranging from 2·5 nautical miles (nm) to directly overhead at speeds of 400–440 knots.
2. Maximum noise levels (L1) and other noise metrics were influenced by many factors including topography, distance, altitude, wind speed and direction.
3. Based on 240 h of observations from blinds, we recorded osprey nest attendance and egg exposure during 139 individual overflights. Similar observations were completed at two control nests. Overflights as low as 30 m above ground occurred during incubation, nestling and prefledging only when observers were present.
4. Osprey behaviour did not differ significantly (P = 0·126) between pre- and post-overflight periods. Despite L1 values occasionally exceeding 100 decibels, adult osprey did not appear agitated or startled when overflown.
5. Osprey were attentive to and occasionally flushed from nests when float planes, other osprey or raptors entered territories, and when observers were entering or exiting blinds.     

Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics

The monophyly of Rodentia has repeatedly been challenged based on several studies of molecular sequence data. Most recently, D'Erchia et al. (1996) analyzed complete mtDNA sequences of 16 mammals and concluded that rodents are not monophyletic. We have reanalyzed these data using maximum-likelihood methods. We use two methods to test for significance of differences among alternative topologies and show that (1) models that incorporate variation in evolutionary rates across sites fit the data dramatically better than models used in the original analyses, (2) the mtDNA data fail to refute rodent monophyly, and (3) the original interpretation of strong support for nonmonophyly results from systematic error associated with an oversimplified model of sequence evolution. These analyses illustrate the importance of incorporating recent theoretical advances into molecular phylogenetic analyses, especially when results of these analyses conflict with classical hypotheses of relationships.     

Photosynthetic activity of far-red light in green plants

We have found that long-wavelength quanta up to 780 nm support oxygen evolution from the leaves of sunflower and bean. The far-red light excitations are supporting the photochemical activity of photosystem II, as is indicated by the increased chlorophyll fluorescence in response to the reduction of the photosystem II primary electron acceptor, Q_A. The results also demonstrate that the far-red photosystem II excitations are susceptible to non-photochemical quenching, although less than the red excitations. Uphill activation energies of 9.8 ± 0.5 kJ mol⁻¹ and 12.5 ± 0.7 kJ mol⁻¹ have been revealed in sunflower leaves for the 716 and 740 nm illumination, respectively, from the temperature dependencies of quantum yields, comparable to the corresponding energy gaps of 8.8 and 14.3 kJ mol⁻¹ between the 716 and 680 nm, and the 740 and 680 nm light quanta. Similarly, the non-photochemical quenching of far-red excitations is facilitated by temperature confirming thermal activation of the far-red quanta to the photosystem II core. The observations are discussed in terms of as yet undisclosed far-red forms of chlorophyll in the photosystem II antenna, reversed (uphill) spill-over of excitation from photosystem I antenna to the photosystem II antenna, as well as absorption from thermally populated vibrational sub-levels of photosystem II chlorophylls in the ground electronic state. From these three interpretations, our analysis favours the first one, i.e., the presence in intact plant leaves of a small number of far-red chlorophylls of photosystem II. Based on analogy with the well-known far-red spectral forms in photosystem I, it is likely that some kind of strongly coupled chlorophyll dimers/aggregates are involved. The similarity of the result for sunflower and bean proves that both the extreme long-wavelength oxygen evolution and the local quantum yield maximum are general properties of the plants.     

Evaluation of the organic matter supplied to the soil by the decay of the roots of an intensively managedPanicum Maximum sward

Summary A simple three-compartment model was used to evaluate the supply of organic matter to the soil by the decay of the dead roots of an intensively managedPanicum maximum sward. The only known data were the weights of the total dry matter of the roots measured every two weeks for a whole year. By means of three simplifying hypotheses it was possible to evaluate the limits between which the supply of organic matter to the soil lay: between 9 and 16 t/ha/year for a sward, the mean root weight of which at any cutting data was about 3 t/ha. Thus, the root turnover was 2.5 to 4.6 per year.