Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

Panicum virgatum L. (switchgrass) is a polyploid, perennial grass species that is native to North America, and is being developed as a future biofuel feedstock crop. Switchgrass is present primarily in two ecotypes: a northern upland ecotype, composed of tetraploid and octoploid accessions, and a southern lowland ecotype, composed of primarily tetraploid accessions. We employed high‐coverage exome capture sequencing (~2.4 Tb) to genotype 537 individuals from 45 upland and 21 lowland populations. From these data, we identified ~27 million single‐nucleotide polymorphisms (SNPs), of which 1 590 653 high‐confidence SNPs were used in downstream analyses of diversity within and between the populations. From the 66 populations, we identified five primary population groups within the upland and lowland ecotypes, a result that was further supported through genetic distance analysis. We identified conserved, ecotype‐restricted, non‐synonymous SNPs that are predicted to affect the protein function of CONSTANS (CO) and EARLY HEADING DATE 1 (EHD1), key genes involved in flowering, which may contribute to the phenotypic differences between the two ecotypes. We also identified, relative to the near‐reference Kanlow population, 17 228 genes present in more copies than in the reference genome (up‐CNVs), 112 630 genes present in fewer copies than in the reference genome (down‐CNVs) and 14 430 presence/absence variants (PAVs), affecting a total of 9979 genes, including two upland‐specific CNV clusters. In total, 45 719 genes were affected by an SNP, CNV, or PAV across the panel, providing a firm foundation to identify functional variation associated with phenotypic traits of interest for biofuel feedstock production.     

Assessment of genetic diversity in broomcorn millet （Panicum miliaceum L.） using SSR markers

The genetic diversity of 118 accessions of broomcom millet （Panicum miliaceum L.）, collected from various ecological areas, was analyzed. Using 46 SSR （Simple Sequence Repeat） polymorphic markers from rice, wheat, oat and barley, a total of 226 alleles were found, which exhibited moderate level of diversity. The number of alleles per primer ranged from two to nine, with an average of 4.91. The range of polymorphism information content （PIC） was 0.2844）.980 （average, 0.793）. The expected heterozygosity （He） varied from 0.346 to 0.989, with an average of 0.834. The average coefficient of the genetic similarity of SSR markers among the 118 accessions was 0.609, and it ranged from 0.461 to 0.851. The UPGMA （Unweight Pair Group Method with Arithmetic Mean） clustering analysis at the genetic similarity value of 0.609 grouped the 118 accessions into five groups. Mantel test meant that geographical origin and genetic distance presented positive correlation. The clustering results were consistent with known information on ecological growing areas. The genetic similarity coefficient of the accessions in the Loess Plateau ecotype was significantly lower than those in the other ecotypes. It indicates that the highest level of genetic diversity occurred in the Loess Plateau, which is probably the original site of Panicum miliaceum.     

Dominant Grasses Suppress Local Diversity in Restored Tallgrass Prairie

Warm‐season (C₄) grasses commonly dominate tallgrass prairie restorations, often at the expense of subordinate grasses and forbs that contribute most to diversity in this ecosystem. To assess whether the cover and abundance of dominant grass species constrain plant diversity, we removed 0, 50, or 100% of tillers of two dominant species (Andropogon gerardii or Panicum virgatum) in a 7‐year‐old prairie restoration. Removing 100% of the most abundant species, A. gerardii, significantly increased light availability, forb productivity, forb cover, species richness, species evenness, and species diversity. Removal of a less abundant but very common species, P. virgatum, did not significantly affect resource availability or the local plant community. We observed no effect of removal treatments on critical belowground resources, including inorganic soil N or soil moisture. Species richness was inversely correlated with total grass productivity and percent grass cover and positively correlated with light availability at the soil surface. These relationships suggest that differential species richness among removal treatments resulted from treatment induced differences in aboveground resources rather than the belowground resources. Selective removal of the dominant species A. gerardii provided an opportunity for seeded forb species to become established leading to an increase in species richness and diversity. Therefore, management practices that target reductions in cover or biomass of the dominant species may enhance diversity in established and grass‐dominated mesic grassland restorations.     

The localization of serine hydroxymethyltransferase in leaves of C3 and C4 species

The intracellular distribution of serine hydroxymethyltransferase (EC 2.1.2.1) was studied in young wheat ( Triticum aestivum L. cv. Starke II) leaves by fractionation of protoplasts and further purification of peroxisomes and chloroplasts. Essentially all of the activity in wheat leaves was located in the mitochondria. Within the mitochondria the enzyme was mainly in the matrix as shown by centrifugation of sonicated wheat mitochondria. In the C₄ plants, Zea mays (L. cv. Earliking), Panicum miliaceum and Panicum maximum (cv. Australia) belonging to different C₄ types, serine hydroxymethyltransferase was almost exclusively found in bundle sheath cells. The location of this enzyme in leaves is consistent with its role relative to glycine decarboxylation during photorespiration.     

Isozyme polymorphism and organization of the agamic complex of the Maximae (Panicum maximum Jacq., P. infestum Anders,and P. trichocladum K. Schum.) in Tanzania

The tribe Maximae (Panicum maximum Jacq., P. infestum Anders., P. trichocladum K. Schum.) includes two sympatric pools with different modes of reproduction and ploidy levels: an apomictic and tetraploid pool on the one hand, and a smaller, sexual and diploid pool on the other. From an analysis of isozyme polymorphism five main results were evident. First, overall polymorphism is considerable showing that apomixis does not lead to a reduction in diversity. Second, the isozyme polymorphism of the two pools is similar, and this may be explained by reciprocal gene flow (low, but continuous) between these two pools. Third, maximum local polymorphism is due to the simultaneous presence of P. maximum sexuals and P. infestum apomicts. A continuum exists between the two species. Fourth, a high proportion of rare alleles, arising from introgression from P. infestum, characterized the isozyme polymorphism. These rare alleles, strongly counter-selected at the diploid level, are maintained by apomixis; the frequency of triplex or quadruplex genotypes was nevertheless low. Fifth, the heterozygosity level within apomicts is not higher than that of sexuals, showing that the apomixis-polyploidy combination does not lead to a higher frequency of very heterozygous individuals.     

Effects of bison grazing on Andropogon gerardii and Panicum virgatum in burned and unburned tallgrass paririe

Summary Responses to clipping and bison grazing in different environmental contexts were examined in two perennial grass species, Andropogon gerardii and Panicum virgatum, on the Konza Prairie in northeastern Kansas. Grazed tillers had lower relative growth rates (RGR) than clipped tillers following defoliation but this difference was transient and final biomass was not affected by mode of defoliation. Grazed tillers of both species had higher RGR throughout the season than ungrazed tillers, resulting in exact compensation for tissue lost to defoliation. However, A. gerardii tillers which had been grazed repeatedly the previous year (1988) had reduced relative growth rates, tiller biomass and tiller survival in 1989. This suggests that the short-term increase in aboveground relative growth rates after defoliation had a cost to future plant growth and tiller survival.In general, the two species had similar responses to defoliation but their responses were altered differentially by fire. The increase in RGR following defoliation of A. gerardii was relatively greater on unburned than burned prairie, and was influenced by topographic position. P. virgatum responses to defoliation were similar in burned and unburned prairie. Thus grazing, fire, and topographical position all interact to influence tiller growth dynamics and these two species respond differently to the fire and grazing interaction. In addition, fire may interact with grazing pattern to influence a plants' grazing history and thus its long-term performance.     

A comparative study of above-ground productivity of dominant U.S. Gulf Coast marsh species

Above-ground productivity of dominant freshwater, brackish, and salt-marsh species from the U.S. Gulf Coast was evaluated using both gas exchange techniques and harvest methods. Both techniques showed significant differences in productivity among the study species which represent major components of their respective communities. Estimates of net aerial primary productivity using the harvest method yielded 3683 g dw (dry weight) m^?2yr^?1 for Spartina alterniflora (tall), 2008 g dw m^?2yr^?1 for S. alterniflora (short), 3677 g dw m^?yr^?1 for S. patens and 1641 g dwm^?yr^?1 for Panicum hemitomon. Carbon balance estimated from gas exchange calculation yielded values approximately equivalent to a biomass accumulation of 6024 g dw m^?2yr^?1 for S. alterniflora (tall), 3047 g dw m^?yr^?1 for S. alterniflora (short), 5702 g dw m^?yr^?1 for S. patens, and 2912 g dm^?yr^?1 for P. hemitomon. The net aerial primary production was estimated to be approximately 61% of total productivity in S. alterniflora (tall-form) and 66%o of total productivity in short-form, 64% in S. patens and 56%) in P. hemitomon. The assimilation data also indicated that Spartina alterniflora and S. patens continue carbon fixation throughout the year while assimilation in Panicum hemitomon is absent due to lack of live leaves during the winter. Various aspects of harvest and gas exchange techniques are discussed.     

Seed mass and emergence time effects on performance of Panicum dichotomiflorum Michx. across environments

Summary The effects of seed mass and emergence time on growth and reproduction of the annual, C₄ grass, Panicum dichotomiflorum Michx., were investigated in an experimental field study. Individual seeds of P. dichotomiflorum of known mass were sown into marked plots in four newly-abandoned fields that differed in soil nutrient availability, soil moisture and the time of the year in which they were abandoned. Seedling emergence was monitored daily for four weeks following sowing. In none of these fields was there any relationship between seed mass and emergence time. Analyses of covariance indicated that the effects of seed mass and emergence date on plant performance varied among fields. Seed mass affected performance in one field (SOUTH EARLY) where abiotic stress after emergence was high. In contrast, later emergence significantly reduced performance in all four fields. We used a path analysis to decompose the direct and indirect effects of seed mass and emergence time on plant performance in each field. The path analysis revealed that in all four fields, final weight had a significant positive effect on seed production. The effect of seed mass and emergence time had variable (and often opposite effects) on these traits. Seed mass only had a significant positive, direct effect on seed production in the most abiotically stressful field (SOUTH LATE). In the other fields, the effects of seed mass on fecundity were mediated by the effect on final weight. Thus, the effects of seed mass and emergence time on growth and reproduction in P. dichotomiflorum vary across environments.     

八倍体糜子生长生理特性的探讨

在盆栽条件下,对八倍体糜子的生长生理特性和丰产性进行了探讨。结果表明:在叶片发育、植株高度、叶片数目及干物质积累上,八倍体比四倍体明显表现出劣势;根茎叶三器官的干物质积累量与总量的表现趋势一致;叶面积增长与干物质积累之间呈显著正相关(r=0.8691)。八倍体糜子较低的光合强度(Pn)、较小的叶面积(LA)和光合势(P.P)是导致干物质积累量小的重要原因。八倍体糜子的根系活力(RA)高,吸水能力强,气孔阻力(SR)小,蒸腾强度(Trao.R)大,脱水速度(DR)快,保水能力差,叶和茎的相对含水量(RWC)小,水分饱和亏(WSD)大,故水分利用效率(WUE)和抗旱性(DrR)比四倍体差。主穗分枝多,千粒重大,不孕小花数多,穗粒数少、结实率低、丰产性差是八倍体糜子的重要特点。     

糜子离体体细胞胚胎发生的组织学研究

利用组织学连续石腊切片的研究方法,观察了糜子组织培养中植株再生的过程,从而证明了植株再生是通过体细胞胚胎发生途径的。结果表明:(1) 糜子成熟胚培养首先从下胚轴及胚根区愈伤组织化;(2) 体细胞胚起源于下胚轴及胚根维管束周围愈伤组织中单个离散的胚性细胞;(3) 糜子离体体细胞胚有与典型禾谷类作物合子胚大致相似的发育过程。