Zooplankton species composition is linked to ocean transport in the Northern California Current

In the Northern California Current (NCC), zooplankton communities show interannual and multiyear shifts in species dominance that are tracked by survival of salmon populations. These zooplankton community changes correlate with the Pacific Decadal Oscillation (PDO) index: a ‘warm‐water’ copepod species group is more abundant during warm (positive) phases of the PDO and less abundant during cold (negative) phases; the reverse occurs for a ‘cold‐water’ species group. The observed relationship led to the hypothesis that the relative dominance of warm/cold‐water copepods in the NCC is driven by changes in the horizontal advection of surface water over different phases of the PDO. To test this hypothesis, variation in surface water advection to coastal regions of the NCC over the period of 1950–2008 was investigated using a Regional Ocean Modeling System (ROMS) and passive tracer experiments, then was compared with zooplankton collected off Oregon since 1996. Results showed that surface water advection varied with the phase of the PDO; the low‐frequency component of advection anomalies strongly correlated with copepod species composition (R>0.9). During positive phases of the PDO, current anomalies were northward and onshore, resulting in transport of warmer waters and the associated copepods into the region. During negatives phases, increased equatorward current anomalies led to a copepod community that was dominated by cold‐water taxa. Our results support the hypothesis that climate‐driven changes in basin‐scale circulation controls copepod community composition in the NCC, and demonstrate that large‐scale climate forcings downscale to influence local and regional ecosystem structure.     

Glacial–interglacial deep-water changes in the NW Pacific inferred from single foraminiferal δO and δC

Oxygen and carbon isotope values of single benthic foraminiferal tests in a core from the Shatsky Rise, NW Pacific Ocean, show greater intra-horizon variance during the Holocene than during the Last Glacial Maximum (LGM). This greater variance is caused by the introduction of glacial specimens some 20 cm upward from their original deposition layer due to bioturbation. In contrast, foraminiferal populations belonging to glacial layers do not include Holocene specimens. The difference in direction of bioturbation greatly modifies climate information in horizons formed during and after deglacial events. After omitting glacial specimens from Holocene sediments, the glacial–interglacial difference in δ¹⁸O suggests that Pacific deep-water temperature changed by 2.4–3.8°C at the most. The δ¹³C values suggest that nutrient concentration was higher during the LGM than the Holocene. The glacial deep North Pacific Ocean apparently was influenced by cold deep waters of southern origin.     

Evidence for a Causal Link between Exposure to an Insecticide Formulation and Declines in Catch of Atlantic Salmon

We report a case study showing relationships between historical insecticide applications (1973 to 1990) of an aminocarb formulation (Matacil® 1.8D ) containing 4-nonylphenol (4-NP) and catch data for Atlantic salmon (Salmo salar) populations. To address the hypothesis that Matacil® 1.8D caused reductions in Atlantic salmon catch, seven epidemiological criteria are used to evaluate causality between the stressor and effect. These criteria include: strength of association; consistency of association; specificity of association; time order; biological gradient; experimental support; and biological plausibility. We conclude that the general weight-of-evidence supporting the seven epidemiological criteria is consistent with a causal relationship between declines in salmon catch and Matacil® 1.8D exposure during parr-smolt transformation (PST). If the effects exerted by 4-NP are due to its activity as a weak estrogen, then hormonal activity stemming from other sources (e.g., domestic sewage, agricultural, industrial) might influence present day salmon populations.     

Two new species of Mediomastus (Annelida,Capitellidae) from Tokyo Bay,Japan

Two undescribed species of polychaetes in Mediomastus (Annelida: Capitellidae) were collected from intertidal to shallow habitats in Tokyo Bay, Japan. These are M. duobalteus sp. n. and M. hanedaensis sp. n. Mediomastus duobalteus sp. n. is distinguishable from all congeners by the following characters: 1) segments 3, 4, 8–11 stainable with methyl green, 2) thoracic capillary chaetae unilimbate, 3) abdominal capillary chaetae absent, 4) paddle-like chaetae in the thorax absent, and 5) abdominal hooded hooks not flared. Mediomastus hanedaensis sp. n. is similar to M. warrenae Green, 2002, but differs from the latter in the shapes of the thoracic capillary chaetae and the abdominal hooded hooks, and the staining pattern with methyl green. In addition, a key to all Mediomastus species is provided.     

Phylogeography of Emerita analoga (Crustacea,Decapoda, Hippidae), an eastern Pacific Ocean sand crab with long‐lived pelagic larvae

Aim Phylogeographic analyses have confirmed high dispersal in many marine taxa but have also revealed many cryptic lineages and species, raising the question of how population and regional genetic diversity arise and persist in dynamic oceanographic settings. Here we explore the geographic evolution of Emerita analoga, an inter‐tidal sandy beach crab with an exceptionally long pelagic larval phase and wide latitudinal, amphitropical, distribution. We test the hypothesis that eastern Pacific E. analoga constitute a single panmictic population and examine the location(s), timing and cause(s) of phylogeographic differentiation. Location Principally the eastern Pacific Ocean. Methods We sequenced cytochrome c oxidase subunit I (COI) from 742 E. analoga specimens collected between 1997 and 2000 and downloaded homologous sequences of congeners from GenBank. We reconstructed a phylogeny for Emerita species using maximum likelihood and Bayesian methods and estimated times to most recent common ancestors (TMRCAs), using a COI divergence rate of 1% Myr^?1 and timing of closure of the Central American Seaway. We constructed the COI haplotype network of E. analoga using statistical parsimony, calculated population genetic and spatial structure statistics in Arlequin , and estimated the demographic history of E. analoga using Bayesian skyline analysis. Results Population subdivision and allele frequency differences were insignificant among north‐eastern Pacific locations over 2000 km apart (Φ_ST = 0.00, P = 0.70), yet two distinct phylogroups were recovered from the north‐eastern and south‐eastern Pacific (Φ_CT = 0.87, P < 0.001). Amphitropical differentiation of these temperate clades occurred after TMRCA 1.9 ± 0.02 (mean ± SE) Ma and E. analoga has expanded into its present‐day north‐eastern Pacific range since c. 250 ka. Main conclusions Emerita analoga is not panmictic but is very widely dispersed and approaching genetic homogeneity, i.e. ‘eurymixis’, in the north‐eastern Pacific. North‐eastern and south‐eastern Pacific populations of E. analoga probably became isolated c. 1.5 Ma as the tropical eastern Pacific Ocean warmed and expanded, intensifying barriers to gene flow. The fragmentation of a widespread ancestral species previously connected by long‐distance gene flow (‘soft vicariance’) coincident with changing oceanographic conditions may be a common theme in the evolution of Emerita species and in other highly dispersive taxa. Highly dispersive species may differentiate because of, not despite, the dynamic oceanographic setting.     

Bacterioplankton nutrient metabolism in the Eastern Tropical North Pacific

Bacterioplankton nutrient metabolism in the Eastern Tropical North Pacific (ETNP) was assessed using specific activities of intracellular nitrogen (N) assimilation enzymes and hydrolytic ectoenzymes during amendment experiments, mesocosms, and diel studies of in situ rates. Glutamine synthetase (GS) and assimilatory nitrate reductase (ANR) were used to investigate N bioavailability, alkaline phosphatase (AP) to assess phosphorous (P) bioavailability and β-glucosidase (β-Glu) to detect shifts in the use of labile dissolved organic carbon (DOC). Conditions regulating activity of each enzyme were tested using incubations of < 0.6 mm size-fractionated seawater amended with different combinations of N, P, and DOC as glucose. Overall, N-deficiency was indicated by pronounced growth stimulation and repression of GS and ANR activity in incubations amended with dissolved free amino acid and ammonium. Phosphate and glucose amendments produced little or no growth stimulation, but did influence activity of all enzymes measured. Enzyme activities of bacterioplankton in mesocosms of whole plankton indicated enhanced N-deficiency and glucoside hydrolysis when the plankton community was released from any P-deficiency. Spatially, enzyme activity of bacterioplankton during two diel studies (at one slope and one open-ocean station) suggested greater N-deficiency at surface depths than within the chlorophyll maximum where activity of AP and b-Glu was often greatest. There was also greater GS and ANR activity at the open-ocean station, which had lower concentrations of dissolved inorganic N (DIN) relative to soluble reactive P (SRP), than along the continental slope of Mexico. These data suggest that bacterioplankton in surface waters of the ETNP require a large flux of DOC to drive N-deficiency; whereas, bacterioplankton deeper in the chlorophyll maximum depend on hydrolysis of complex DOC and DOP to meet their carbon demand in the presence of elevated nutrients with a low DIN:SRP ratio.     

Effects of Salmon-Borne Nutrients on Riparian Soils and Vegetation in Southwest Alaska

Spawning Pacific salmon (Oncorhynchus spp.) contribute marine-derived nutrients to riparian ecosystems, potentially affecting characteristics of the associated soils and vegetation. We quantified these effects by comparing soil and vegetative characteristics upstream and downstream of natural migratory barriers on ten spawning streams in southwest Alaska. Mean δ¹⁵N values—indicative of salmon-borne nutrients—were significantly higher in the O horizon and surface mineral soils downstream of barriers (near spawning reaches) than in soils upstream of barriers (near non-spawning reaches). However, the mean total N concentration in surface mineral soil was lower downstream than upstream. Mean foliar δ¹⁵N values were higher downstream for three plant species (Picea glauca, Salix alaxensis and Arctagrostis latifolia) with contrasting physiognomies. Mean overstory stem density was 100% higher downstream, primarily due to a fivefold difference in the density of large-diameter willows (Salix spp.). Mean understory stem density was 47% lower downstream, also driven by a difference in willow density. Mean ground layer non-vascular and dwarf shrub species covers were 28% and 73% lower downstream, respectively. Of the ten soil and vegetative characteristics that differed upstream to downstream, two (O horizon and Picea glauca δ¹⁵N) were correlated with the density of spawning salmon. Collectively, the data suggest that salmon-borne nutrients alter riparian soils and vegetation, while factors unrelated to salmon are responsible for the ultimate expression of many community characteristics.     

Predicting biomass of Atlantic salmon from morphometric lateral measurements

Previously biomass predictions have been derived from simple weight—length relationships. This study measured a variety of truss and conventional dimensions covering the lateral body profile of Atlantic salmon Salmo salar and, using regression analysis, developed a series of multifactor weight—lateral dimension relationships. Single-factor regression equations proved inadequate for predicting weight with percentage errors between real and estimated values ranging from −1.2±6.8% to 72.5 ± 225.6%. Fifty-two multifactor regression equations were generated that predicted accurately the weight of individual fish to within ±2% using combinations of conventional and truss measurements. Regression coefficients were found to be significantly different ( P <0.05) between Scottish and Norwegian strains, indicating morphological differences between the genetic groups. Norwegian fish were generally heavier for a given length compared to Scottish strains. This suggests that morphologically different strains of S. salar would require individual weight: lateral dimension relationships to be developed in order to predict biomass accurately to within commercially acceptable levels.     

Tanochenia nov. gen., a new generic name for the radiolarian species Stylotrochus asteros Tan & Chen, 1999

The structural study of several Quaternary specimens of the radiolarian species Stylotrochus asteros Tan and Chen, 1999 proves that this species does not belong to this genus or to other Cenozoic genera so far known. This species has a large lenticular lattice cortical shell with one face convex and the other one concave or flat, and an initial skeleton inside it consisting of a small tumour-shaped spongy structure attached to the convex side. Given these peculiarities of this species, the author erects for it the genus Tanochenia nov. gen.