Mapping of phosphorylation-dependent anti-tau monoclonal antibodies in immunoblots using human tau-constructs synthesized by native chemical ligation

In Alzheimer’s disease (AD) neurofibrillary tangles (NFT) are formed by hyperphosphorylated microtubule-associated tau protein. It is still a matter of controversy which phosphorylation sites are AD-specific and how these might be linked to the cause or progress of the disease. Whereas most research projects in this field rely on phosphorylation-dependent tau-specific monoclonal antibodies (mAbs), the phosphorylation patterns recognized by these mAbs are often not characterized in detail. Therefore, we synthesized unphosphorylated, two monophosphorylated (pThr231, pSer235), and the bisphosphorylated (pThr231 + pSer235) tau226-240 peptides. The phosphopeptides were ligated via an N-terminal cysteine to the thioester-activated C-terminus of human aldo/keto reductase AKR1A1. After purification by preparative gel electrophoresis, the ligation products were analyzed by Western blotting and probed with phosphorylation-dependent anti-tau mAbs HPT-101, HPT-103, HPT-104, and HPT-110. The obtained specificities were very similar to the data obtained by ELISA, showing that ELISA-based epitope mapping studies are also valid for immunoblot analyses.     

Glycanogenomics: a qPCR-approach to investigate biological glycan function

As an indirect approach towards glycan structures, qRT-PCR analyses using the ΔΔC_T method were performed to investigate changes in expression levels of heparan sulfate-synthesising enzymes of stimulated and unstimulated HMVECs. We chose NDSTs as early enzymes initiating sulfation and 3OSTs which act late generating specific binding sites. Major changes in expression patterns were found for the NDST3 and 3OST1 isoforms. Both enzymes were down-regulated 7- and 6-fold, respectively, following TNF-α stimulation, and 3.5- and 7.6-fold following LPS-stimulation suggesting a common restructuring process of HS in inflammation leading to a less diverse sulfation pattern. Immunostaining of TNF-α-stimulated cells using a phage display-derived antibody specific for 3-O-sulfation and unsulfated regions of HS resulted in significant fluorescence changes between unstimulated and stimulated.     

Evolutionary synthesis from a cosmopolitan point of view: a commentary on the ideas of Reif, Junker and Hossfeld

Summary The analysis of the Evolutionary Synthesis by Reif, Junker and Hossfeld (2000, Theory in Biosciences 119: 41–91) draws attention to language barriers that however important are far from impenetrable. The Synthesis is better viewed as a restoration than a revolution, and as something that occurred gradually, with no particular goal.     

An optimized solid phase synthesis strategy--including on-resin lactamization--of astressin, its retro-, inverso-, and retro-inverso isomers as corticotropin releasing factor antagonists.

This report describes an optimized solid phase synthesis strategy for astressin and new derivatives thereof. The synthesis is based on 9-fluorenylmethyloxycarbonyl/allyl/tert-butyl chemistry. The glutamic acid and lysine residue, which together form the cyclic constraint by coupling of their side chains, were protected by allyl functionalities during the synthesis of the linear peptide. Allyl removal by Pd(0) and the construction of the lactam bridge have been performed on-resin after completion of the chain assembly. This synthetic methodology resulted in high chemical yields (58-72%) and excellent purities of the crude peptides. The peptides were tested for their binding at the corticotropin releasing factor receptor, type 1, and their corticotropin releasing factor antagonistic activity. Furthermore, astressin and its analogs were studied by CD in order to determine the secondary structure in solution. Since the linear form of astressin and also the cyclic inverso isomer were found to be fully inactive, it can be concluded that a cyclic constraint and a right-handed alpha-helix, respectively, are of utmost importance for these peptides to act as corticotropin releasing factor antagonists.     

Cryptobiosis in the Eutardigrade Adorybiotus (Richtersius) coronifer: Tolerance to Alcohols, Temperature and de novo Protein Synthesis

The eutardigrade Adorybiotus (Richtersius) coronifer survives cryptobiosis for years. During entrance into anhydrobiosis this species accumulates the disaccharide trehalose reaching a maximum content of 2.3% d.w.

In the present study we examined the survival of anhydrobiotic A. (R)coronifer during exposure to alcohols of various polarity, and to high temperatures, as well as qualitative changes in protein synthesis during entrance into anhydrobiosis. Results showed that A. (R) coronifer in anhydrobiosis survived exposure to ethanol for less than 10 minutes whereas exposure to 1-butanol only decreased survival to 40% after the first 7 days and 1-hexanol did not change survival from the controls after the first 7 days. A. (R) coronifer survived temperatures up to approximately 70 °C for 60 minutes without any decrease in survival. However, survival decreased rapidly when the exposure temperature was increased to above 70 °C and no animals survived exposure to 100 °C. During the entrance into anhydrobiosis a protein with a molecular weight of approximately 71 kDa appeared on acryl amide gels showing protein bands after the animals had been incubated with ³H-Leucine. This protein may belong to the Heat-shock protein (Hsp) 70 family. The results on the survival of A. (R) coronifer during exposure to alcohols and high temperature are discussed in light of the trehalose content earlier described in this animal during anhydrobiosis.     

PHOTOSYNTHETIC FUNCTION IN DUNALIELLA TERTIOLECTA (CHLOROPHYTA) DURING A NITROGEN STARVATION AND RECOVERY CYCLE

Phytoplankton can be exposed to periods of N starvation with episodic N resupply. N starvation in Dunaliella tertiolecta (Butcher) measured over 4 days was characterized by slow reduction in cell chl and protein content and chl/carotenoid ratio and a decline in photosynthetic capacity and maximum quantum yield of photosynthesis (F_v/F_m). In the early stages of N starvation, cell division was maintained despite reduction in cellular chl. Chl content was more sensitive than carotenoids to N deprivation, and cellular chl a was maintained preferentially over chl b under N starvation. NO₃^? resupply stimulated rapid and complete recovery of F_v/F_m (from 0.4 to 0.7) within 24 h and commencement of cell division after 10 h, although N‐replete levels of cell chl and protein were not reestablished within 24 h. Recovery of F_v/F_m was correlated with increases in cell chl and protein and was more related to increases in F_m than to changes in F₀. Recovery of F_v/F_m was biphasic with a second phase of recovery commencing 4–6 h after resupply of NO₃^?. Uptake of NO₃^? from the external medium and the recovery of F_v/F_m, cell chl, and protein were inhibited when either cytosolic or chloroplastic protein synthesis was inhibited by cycloheximide or lincomycin, respectively; a time lag observed before maximum NO₃^? uptake was consistent with synthesis of NO₃^? transporters and assimilation enzymes. When both chloroplastic and cytosolic translation was inhibited, F_v/F_m declined dramatically. Dunaliella tertiolecta demonstrated a capacity to rapidly reestablish photosynthetic function and initiate cell division after N resupply, an important strategy in competing for limiting inorganic N resources.     

Synthesis and Selection: Wynne-Edwards' Challenge to David Lack

David Lack of Oxford Universityand V.C. Wynne-Edwards of Aberdeen Universitywere renowned ornithologists with contrastingviews of the modern synthesis which deeplyinfluenced their interpretation and explanationof bird behavior. In the 1950's and 60's Lackbecame the chief advocate of neo-Darwinism withrespect to avian ecology, while Wynne-Edwardsdeveloped his theory of group selection. Lack's position was consistent with thedeveloping focus on individual leveladaptation, which was a core concept of themodern synthesis. Alternatively, Wynne-Edwardsviewed the emphasis on populations as the mostimportant development provided by the modernsynthesis. In this paper, I present thedevelopment of these two positions and tracetheir roots in the literature of the synthesis.Through an analysis of Lack's 1966 critique ofWynne-Edwards I conclude that Wynne-Edwardswas, in many ways, justified in his pursuit ofgroup level explanations.     

Bacillus licheniformis protease-catalyzed peptide synthesis via the kinetically controlled approach using the carbamoylmethyl ester as an acyl donor in anhydrous acetonitrile

Summary The couplings ofN-protected amino acid esters with amino acid amides proved to be carried out in anhydrous acetonitrile in the presence ofBacillus licheniformis protease (subtilisin Carlsberg) immobilized on Celite. The maximal peptide yields were obtained with the immobilized enzyme prepared through lyophilization from a pH 10.7 buffer solution. A series of dipeptide syntheses and several segment condensations were achieved generally in high yields by the combined use of the immobilized enzyme prepared from this pH and the carbamoylmethyl ester as the acyl donor.