Analysis of picogram quantities of protein in subnanoliter-size samples

The ability to measure protein concentration in subnanoliter volumes would be helpful in many biological studies. A microassay for measuring nanogram protein quantities in nanoliter-size samples and an ultramicroassay for measuring picogram quantities in picoliter samples were developed to measure lymphatic protein concentration. Aliquots of a sample solution were mixed with an o-phthalaldehyde mercaptoethanol reagent using micropipetting techniques. Reaction product fluorescence was measured using a modified Leitz MPV-1 microscope as a microfluorometer. Fluorescence varied linearly with albumin concentrations between 1 and 8 g/100 ml. A typical microassay measuring albumin standards at 0.0, 1.0, 2.0, and 4.0 g/100 ml yielded a linear regression of y = 207x + 60 (r = 0.99). Minimum detectable protein concentration was 0.125 g/100 ml. The SE for the albumin standards varied from 0.02 to 0.17 g/100 ml. An ultramicroassay measuring similar standards yielded a linear regression of y = 1180x + 109 (r = 0.96). Minimum detectable protein concentration was 0.028 g/100 ml. The SE for the standards varied from 0.01 to 0.32 g/100 ml.     

Spectroscopic and molecular modeling approaches to investigate the binding of proton pump inhibitors to human serum albumin

The interaction between two proton pump inhibitors viz., omeprazole (OME) and esomeprazole (EPZ) with human serum albumin (HSA) was studied by fluorescence, absorption, circular dichroism (CD), Fourier transform infrared spectroscopy (FT-IR), voltammetry, and molecular modeling approaches. The Stern–Volmer quenching constants (K_sv) for OME-HSA and EPZ-HSA systems obtained at different temperatures revealed that both OME and EPZ quenched the intensity of HSA through dynamic mode of quenching mechanism. The binding constants of OME-HSA and EPZ-HSA increased with temperature, indicating the increased stability of these systems at higher temperatures. Thermodynamic parameters viz., ?H^°, ?S^°, and ?G^° were determined for both systems. These values revealed that both systems were stabilized by hydrophobic forces. The competitive displacement and molecular docking studies suggested that OME/EPZ was bound to Sudlow’s site I in subdomain IIA in HSA. The extent of energy transfer from HSA to OME/EPZ and the distance of separation in tryptophan (Trp214) Trp214-OME and Trp214-EPZ was determined based on the theory of fluorescence resonance energy transfer. UV absorption, 3D fluorescence, and CD studies indicated that the binding of OME/EPZ to HSA has induced micro environmental changes around the protein which resulted changes in its secondary structure.     

IN SITU ALLELOPATHIC POTENTIAL OF MYRIOPHYLLUM VERTICILLATUM (HALORAGACEAE) AGAINST SELECTED PHYTOPLANKTON SPECIES1

The potential allelopathic impact of Myriophyllum verticillatum L. under in situ conditions was determined in a series of field and laboratory experiments. Coexistence experiments were performed in a lake dominated by M. verticillatum (Van Goor) Meffert where we exposed three unialgal phytoplankton cultures in dialysis tubes to macrophyte exudates regularly during the vegetated period. Plant content and exudation of polyphenolic compounds were determined, and the inhibitory activity of polyphenol‐containing extracts was tested in bioassays with cyanobacteria. To account for possible resource interference, we monitored growth and photosynthesis of phosphorus‐limited and unlimited cyanobacterium Limnothrix redekei in dialysis tubes exposed to M. verticillatum in aquaria. A high allelopathic potential of M. verticillatum was concluded from high tissue concentrations of total phenolic compounds of 6%–12% of dry matter, the demonstrated release of bioactive polyphenols into the surrounding medium, and the inhibition of cyanobacteria by extracts. We could not unambiguously demonstrate the exudation of polyphenols by M. verticillatum in situ due to interference with allochthonous humic compounds. In laboratory experiments, L. redekei exhibited significantly reduced maximum relative electron transport rates when co‐cultivated in dialysis tubes with M. verticillatum. The field dialysis tube experiment confirmed this result, accompanied by a decline of chl a and PSII activity for L. redekei and the diatom Stephanodiscus minutulus (Kütz.) Greve et Möller, but not for the green alga Scenedesmus armatus Chodat in August. At other times, either no effects or stimulatory effects were observed with all species. Nutrient limitation of the target species may have masked allelopathic effects, and M. verticillatum may have enhanced phytoplankton growth due to phosphorus leakage.     

EFFECTS OF SALINITY AND LIGHT INTENSITY ON THE RESUMPTION OF PHOTOSYNTHESIS IN REHYDRATED CYANOBACTERIAL MATS FROM BAJA CALIFORNIA SUR,MEXICO1

Lyngbya mats in the intertidal of the Laguna Ojo de Liebre are metabolically active for only a few days every 2 weeks during spring tides, with environmental conditions varying greatly during these periods of hydration. Pulse amplitude modulated fluorometry (PAM) and oxygen measurements were used to measure photosynthetic activity during the first few hours after rehydration under various light intensities and salinities. Upon rehydration, a transitory maximum in respiratory activity (10–30 min) occurred before the resumption of photosynthesis, which could recover in about 2 h. Salinities outside the mats' natural range (35–50 psu) were detrimental to photosynthetic recovery. Both high (100 psu) and low (0–10 psu) salinities slowed recovery as well as lowered the overall photosynthetic yield. Photosynthesis was initiated earlier and recovered more rapidly with increasing light intensity. In addition, the positive effect of light on rates of recovery was disproportionately greater at lower salinities (10–25 psu) where high light (500 W·m^?2) counteracted the negative effects of low‐salt stress early in recovery. However, higher light intensities became photoinhibitory later in recovery (>2 h). Photosynthesis did not recover uniformly within the mat. Filaments deeper in the mat most likely recovered later than those near the surface due to high light attenuation. The ability of the mats to tolerate desiccation and take advantage of hydration periods even when conditions are suboptimal enables these mats to predominate in the intertidal environment.     

PHOTOPHYSIOLOGICAL EVIDENCE OF NUTRIENT LIMITATION OF PLATELET ICE ALGAE IN MCMURDO SOUND, ANTARCTICA

Seasonally changing photophysiological and biochemical characteristics of sea ice microalgae are interpreted with respect to light availability and measurements of nutrient concentration made at high vertical resolution (12.5 cm) during a dense bloom in the platelet ice layer of McMurdo Sound during a 6-week study in austral spring of 1989. Platelet ice algae remained highly shade adapted throughout the spring as shown by their low photoadaptive index (E_k, 3.7–8.4 μmol photons·m⁻²·s⁻¹), low mean specific absorption coefficient (<0.009 m² mg⁻¹ Chl a), high optical cross-sectional area of photosystem II (σ_PSII, 3.0–8.2), and high molar ratio of fucoxanthin:chlorophyll a (mean = 1.62 ± 0.15 SD). Between 24 October and 8 November, the algae exhibited a photoacclimative response that was marked by a 30% decrease in photosynthetic efficiency (α^B), a 75% decrease in maximum photosynthetic rate (P^B/_m), and a 60% increase in σ_PSII. The photochemical conversion efficiency at photosystem II (F_v/F_m= ca. 0.5) and the quantum yield of photosynthesis (Ø_C= 0.062– 0.078 mol C mol⁻¹ photons) were ca. 80% of their maximal values. After 8 November, changes in algal photophysiology and biochemistry, which were inconsistent with a photoacclimation response, suggest that the platelet ice algae near the platelet/congelation ice interface became increasingly nutrient limited. The number of pennate diatoms increased threefold to 150 × 10⁹ cells m⁻³ between 8 and 14 November, then remained unchanged throughout the remainder of the field season. Following the increase in cell number, F_v/F_m, Ø_C, and C:Chla decreased by >40%, σ_PSII increased by 70%; and the biochemical ratios C:N and C:Si increased 25%–30%. Nutrient depletion was apparent from the high-resolution vertical profiles, but nutrient concentrations limiting algal growth were not observed. However, nutrient concentrations at the likely site of nutrient limitation near the platelet/congelation ice interface were not measured, indicating that higher resolution sampling is necessary to fully characterize this highly variable habitat.     

Origins of non-linear and dissimilar relationships between epidermal UV absorbance and UV absorbance of extracted phenolics in leaves of grapevine and barley

A recent review of climate patterns in Southern Germany has suggested significant increases in ultraviolet (UV) radiation due to decreases in cloud coverage and in cloud frequency which compound the effects of stratospheric ozone depletion. Whether such UV radiation increases result in UV damage of higher plant leaves depends partly on the capacity of UV-absorbing hydroxycinnamic acids and flavonoids located in the plant epidermis to screen out UV radiation. Epidermal UV screening is most often assessed from UV absorbance of whole-leaf extracts but in the present work, this method is critically examined. In grapevine (Vitis vinifera L.), hydroxycinnamic acid as well as mono-hydroxylated and ortho-dihydroxylated flavonoid concentrations increased in parallel with fluorometrically detected adaxial epidermal UV absorbance but only the latter class of flavonoids was associated with epidermal UV absorbance in barley (Hordeum vulgare L). For both species, curvilinear relationships between epidermal and total phenolic UV absorbance were established: initial slopes of the curves differed markedly between species. Modelling suggested that curvilinearity arises from UV-transparent epidermal areas located between vacuoles which are particularly UV-absorbing due to high levels of phenolics. The species-dependent differences were related to allocation of high amounts of phenolics in the mesophyll and abaxial epidermis in barley but not in grapevine. Both factors, optical heterogeneity and variable distribution of phenolics, severely restrict the use of phenolic absorbance to estimate true epidermal screening.     

Evaluation of methods for total selenium determination in yeast

The selenium determination in biological materials by the classical fluorometric method (FM) is time-consuming and also hazardous, as it requires the destruction of the organic matrix samples with hot HNO₃/HClO₄ mixtures prior to analysis. Accordingly, commercial analytical laboratories are increasingly using faster instrumental methods; for sample digestion, avoid using HClO₄. Because of these procedural changes, the results obtained by commercial laboratories may be unreliable, especially for samples containing Se in organic forms. One such “difficult” substrate is Se yeast, which contains most of its Se as selenomethionine. To establish which methods for Se analysis and sample digestion are applicable, samples of Se yeast and of selenomethionine standards were sent to laboratories employing either flame atomic absorption spectrometry (FAAS), inductively coupled plasma-mass spectrometry (ICP-MS), or hydride generation atomic absorption spectrometry (HGAAS). The result were compared with those obtained by FM and non-destructive instrumental neutron activation analysis (INAA). ICP-MS, after microwave digestion of sample with HNO₃/H₂O₂, produced results within 5% of the expected values, as did those obtained by FM and INAA. With FAAS, acceptable results were obtained after digestion with HNO₃/HCl. With HGAAS, sample digestion with HNO₃/H₂O₂ produced values that were systematically elevated by about 10% and exhibited standard deviations of ≥10%. Thus, current methods of sample digestion are applicable for Se yeast analysis by ICP-MS and FAAS, but not by HGAAS.     

The beta subunit of the Na+/K+-ATPase follows the conformational state of the holoenzyme

The Na+/K+-ATPase is a ubiquitous plasma membrane ion pump that utilizes ATP hydrolysis to regulate the intracellular concentration of Na+ and K+. It is comprised of at least two subunits, a large catalytic alpha subunit that mediates ATP hydrolysis and ion transport, and an ancillary beta subunit that is required for proper trafficking of the holoenzyme. Although processes mediated by the alpha subunit have been extensively studied, little is known about the participation of the beta subunit in conformational changes of the enzyme. To elucidate the role of the beta subunit during ion transport, extracellular amino acids proximal to the transmembrane region of the sheep beta1 subunit were individually replaced for cysteines. This enabled sulfhydryl-specific labeling with the environmentally sensitive fluorescent dye tetramethylrhodamine-6-maleimide (TMRM) upon expression in Xenopus oocytes. Investigation by voltage-clamp fluorometry identified three reporter positions on the beta1 subunit that responded with fluorescence changes to alterations in ionic conditions and/or membrane potential. These experiments for the first time show real-time detection of conformational rearrangements of the Na+/K+-ATPase through a fluorophore-labeled beta subunit. Simultaneous recording of presteady-state or stationary currents together with fluorescence signals enabled correlation of the observed environmental changes of the beta subunit to certain reaction steps of the Na+/K+-ATPase, which involve changes in the occupancy of the two principle conformational states, E1P and E2P. From these experiments, evidence is provided that the beta1-S62C mutant can be directly used to monitor the conformational state of the enzyme, while the F64C mutant reveals a relaxation process that is triggered by sodium transport but evolves on a much slower time scale. Finally, shifts in voltage dependence and kinetics observed for mutant K65C show that this charged lysine residue, which is conserved in beta1 isoforms, directly influences the effective potential that determines voltage dependence of extracellular cation binding and release.     

Elevated CO2 causes changes in the photosynthetic apparatus of a toxic cyanobacterium,Cylindrospermopsis raciborskii

We studied the physiological acclimation of growth, photosynthesis and CO₂-concentrating mechanism (CCM) in Cylindrospermopsis raciborskii exposed to low (present day; L-CO₂) and high (1300 ppm; H-CO₂) pCO₂. Results showed that under H-CO₂ the cell specific division rate (μ_c) was higher and the CO₂- and light-saturated photosynthetic rates (V_max and P_max) doubled. The cells’ photosynthetic affinity for CO₂ (K_0.5CO₂) was halved compared to L-CO₂ cultures. However, no significant differences were found in dark respiration rates (R_d), pigment composition and light harvesting efficiency (α). In H-CO₂ cells, non-photochemical quenching (NPQ), associated with state transitions of the electron transport chain (ETC), was negligible. Simultaneously, a reorganisation of PSII features including antenna connectivity (J_conPSIIα), heterogeneity (PSIIα/β) and effective absorption cross sectional area (σPSIIα/β) was observed. In relation to different activities of the CCM, our findings suggest that for cells grown under H-CO₂: (1) there is down-regulation of CCM activity; (2) the ability of cells to use the harvested light energy is altered; (3) the occurrence of state transitions is likely to be associated with changes of electron flow (cyclic vs linear) through the ETC; (4) changes in PSII characteristics are important in regulating state transitions.     

Subcellular fractionation and subcellular localization of aminopeptidase N in the rabbit enterocytes

Summary A fast and easy procedure is proposed for preparing concomitantly from the same sample of intestinal mucosa of A⁺ rabbits, four fractions high enriched in the brush-border and basolateral plasma membrane domains, rough endoplasmic reticulum, and smooth endoplasmic reticulum plus Golgi apparatus membranes, respectively. This is the first time the technique of flow fluorometry has been applied to characterize the brush-border and basolateral membrane fractions using polyclonal or monoclonal antibodies against antigens common to or specific for these two plasma membrane domains. This technique definitely proves the presence of aminopeptidase in at least 60% of the basolateral membrane vesicles, where its level is about 4.5% of that in the brush-border membrane vesicles. The endoglycosidase H-sensitive intermediate of glycosylation of aminopeptidase N in the steady state is accumulated in both the rough and smooth endoplasmic reticulum membranes. Although the rough membrane is more extensive it contains only about 40% of this transient form.