Development of a sediment bioassay to determine bioavailability of PAHs to fish

Recent work has shown that MFO induction and loss of control of steroid hormone production occurs in fish after exposure to pulp mill effluents, PCBs, PAHs, and some pesticides. We had recently developed laboratory assays to evaluate the effluents on these responses, but were lacking a protocol for a sediment assay. This paper describes the development of a sediment test capable of demonstrating MFO induction in fish. MFO responses were evident in rainbow trout within 4 days of exposure to contaminated sediments. Further testing showed that fish were responding to chemicals from the sediments, but not from bottom water, and a survey of sediment from thirteen contaminated areas showed that MFO induction more closely paralleled PAH levels in the sediments than the observed PCB concentrations. The sites showing MFO induction were also the sites where sediment toxicity was demonstrated with laboratory bioassays using Daphnia magna and Hyalella azteca. The protocol has been further refined to describe the quantity of sediment required and duration of testing. This test will enable us to study the biochemical effects of exposure to contaminated sediments. The protocol could also be used to prioritize areas of contamination and to evaluate dredging impacts and remediation success.     

Electrochemical Stimulation of PAH Biodegradation in Sediment

Natural attenuation of PAH in sediments is usually slow due to prevailing anaerobic conditions in sediments. Electrochemical stimulation of PAH biodegradation is proposed and demonstrated for remediation of contaminated sediment. Two graphite electrodes were placed horizontally at different depths in PAH-spiked sediments; the cathode was near the water-sediment interface and the anode was laid in the deeper sediment. An external power of 2 V was continuously applied to the electrodes to stimulate PAH biodegradation. Redox potential around the anode in powered reactors increased gradually, and was 50–150 mV higher than that in the control. pH around the anode decreased to ～6 from an initial value of 6.4 or 6.7 in powered reactors, which reflected water electrolysis. Phenanthrene concentration at the anode decreased with time, showing a unique Z-shaped profile in the sediment in powered reactors. PAH degrading genes around the anode in powered reactor were found to increase compared to the control reactor, which provided microbial evidence of biodegradation. These findings demonstrated the capability of this novel bioelectrochemical technology for the remediation of PAH-contaminated sediment.     

On the species-specific biotransformation of dibenzo[a,l]pyrene

We were aimed at investigating the activation of the carcinogenic polycyclic aromatic hydrocarbon (PAH) dibenzo[a,l]pyrene (DB[a,l]P) in Chinese hamster V79 cells that express single human, rat or fish cytochrome P450 (CYP) enzymes. DB[a,l]P is detectable in environmental samples and has been characterized as the most potent carcinogenic species among all PAHs as yet tested in rodent bioassays. Metabolite profiles and metabolite-dependent cytotoxic and clastogenic activities were monitored. The total turnover of CYP-mediated transformation of DB[a,l]P was as follows: human CYP1B1>fish CYP1A1 approximately human CYP1A1>rat CYP1A2>rat CYP1A1. By contrast, enzyme forms that are not classified as being members of family CYP1, such as CYP2A6, 2E1, 2B1, and 3A4, failed to catalyze any detectable conversion of this substrate. All CYP1A1 enzymes tested formed both the K-region trans-8,9- and the trans-11,12-dihydrodiol, whereas human CYP1B1 failed to catalyze K-region activation. In cells expressing human or fish CYP1A1, human CYP1B1, and rat CYP1A2, the (-)-trans-11,12-dihydrodiol was formed enantiospecifically. DB[a,l]P-dependent cytotoxicities (EC(50)) were found in the following order: human CYP1A1 (12 nM)>fish CYP1A1 (30 nM)>human CYP1B1 (45 nM)>other forms. In addition, an appreciable micronuclei formation was detected in human CYP1A1- and 1B1-expressing cells during exposure to DB[a,l]P. Our study demonstrates that human CYP1A1, 1B1 and fish CYP1A1 are able to transform DB[a,l]P into genotoxic derivatives in appreciable amounts. In contrast, CYP enzymes from rat predominantly target the K-region of DB[a,l]P and thus are serving more a rather protective route of biotransformation. Together our data suggest that humans might be more susceptible to DB[a,l]P-induced carcinogenicity than rats.     

Pyrene mineralization capacity increases with compost maturity

Experiments were conducted to determine the effects of composting or simple addition of compost to the mineralization of n-hexadecane, pyrene and benzo(a)pyrene in soil. Soil (contaminated or clean) was composted with maple leaves and alfalfa. Samples from different composting phases were spiked with radiolabeled and cold n-hexadecane, pyrene or benzo(a)pyrene, placed in aerated microcosms at different temperatures, and monitored for mineralization. It was determined that neither composting nor the addition of compost had any effect on n-alkane or benzo(a)pyrene mineralization. In contrast, the pyrene mineralization rate increased dramatically with the amount of time that soil had been composted. Highest pyrene mineralization rates and extents (more than 60% after 20 days) were obtained when pyrene was in contact with composted soil from the curing stage. Neither thermophiles (55 °C) nor fungi were responsible for pyrene mineralization.     

Anaerobic degradation of the aromatic hydrocarbon biphenyl by a sulfate-reducing enrichment culture

The aromatic hydrocarbon biphenyl is a widely distributed environmental pollutant. Whereas the aerobic degradation of biphenyl has been extensively studied, knowledge of the anaerobic biphenyl-oxidizing bacteria and their biochemical degradation pathway is scarce. Here, we report on an enrichment culture that oxidized biphenyl completely to carbon dioxide under sulfate-reducing conditions. The biphenyl-degrading culture was dominated by two distinct bacterial species distantly affiliated with the Gram-positive genus Desulfotomaculum . Moreover, the enrichment culture has the ability to grow with benzene and a mixture of anthracene and phenanthrene as the sole source of carbon, but here the microbial community composition differed substantially from the biphenyl-grown culture. Biphenyl-4-carboxylic acid was identified as an intermediate in the biphenyl-degrading culture. Moreover, 4-fluorobiphenyl was converted cometabolically with biphenyl because in addition to the biphenyl-4-carboxylic acid, a compound identified as its fluorinated analog was observed. These findings are consistent with the general pattern in the anaerobic catabolism of many aromatic hydrocarbons where carboxylic acids are found to be central metabolites.     

Solid-phase nano-extraction and laser-excited time-resolved Shpol’skii spectroscopy for the analysis of polycyclic aromatic hydrocarbons in drinking water samples

A unique method for screening polycyclic aromatic hydrocarbons in drinking water samples is reported. Water samples (500 μl) are mixed and centrifuged with 950 μl of a commercial solution of 20 nm gold nanoparticles for pollutants extraction. The precipitate is treated with 2 μl of 1-pentanethiol and 48 μl of n-octane, and the supernatant is then analyzed via laser-excited time-resolved Shpol’skii spectroscopy. Fifteen priority pollutants are directly determined at liquid helium temperature (4.2 K) with the aid of a cryogenic fiber-optic probe. Unambiguous pollutant determination is carried out via spectral and lifetime analysis. Limits of detection are at the parts-per-trillion level. Analytical recoveries are similar to those obtained via high-performance liquid chromatography. The simplicity of the experimental procedure, use of microliters of organic solvent, short analysis time, selectivity, and excellent analytical figures of merit demonstrate the advantages of this environmentally friendly approach for routine analysis of numerous samples.     

Emerging role of bone morphogenetic proteins in angiogenesis

Bone morphogenetic proteins (BMPs) are multifunctional growth factors belonging to the transforming growth factor β (TGFβ) superfamily. Recent observations clearly emphasize the emerging role of BMPs in angiogenesis: (i) two genetic vascular diseases (hereditary hemorrhagic telangiectasia (HHT) and pulmonary arterial hypertension (PAH)) are caused by mutations in genes encoding components of the BMP signalling pathway (endoglin, ALK1 and BMPRII). (ii) BMP9 has been identified as the physiological ligand of the endothelial receptor ALK1 in association with BMPRII. This review will focus on the diverse functions of BMPs in angiogenesis. We will propose a model that distinguishes the BMP2, BMP7 and GDF5 subgroups from the BMP9 subgroup on the basis of their functional implication in the two phases of angiogenesis (activation and maturation).     

Diversity of 16S rRNA and dioxygenase genes detected in coal‐tar‐contaminated site undergoing active bioremediation

Aims: In order to develop effective bioremediation strategies for polyaromatic hydrocarbons (PAHs) degradation, the composition and metabolic potential of microbial communities need to be better understood, especially in highly PAH contaminated sites in which little information on the cultivation‐independent communities is available. Methods and Results: Coal‐tar‐contaminated soil was collected, which consisted of 122·5 mg g^?1 total extractable PAH compounds. Biodegradation studies with this soil indicated the presence of microbial community that is capable of degrading the model PAH compounds viz naphthalene, phenanthrene and pyrene at 50 ppm each. PCR clone libraries were established from the DNA of the coal‐tar‐contaminated soil, targeting the 16S rRNA to characterize (i) the microbial communities, (ii) partial gene fragment encoding the Rieske iron sulfur center (α‐subunit) common to all PAH dioxygenase enzymes and (iii) β‐subunit of dioxygenase. Phylotypes related to Proteobacteria (Alpha‐, Epsilon‐ and Gammaproteobacteria), Acidobacteria, Actinobacteria, Firmicutes, Gemmatimonadetes and Deinococci were detected in 16S rRNA derived clone libraries. Many of the gene fragment sequences of α‐subunit and β‐subunit of dioxygenase obtained from the respective clone libraries fell into clades that are distinct from the reference dioxygenase gene sequences. Presence of consensus sequence of the Rieske type [2Fe‐2S] cluster binding site suggested that these gene fragments encode for α‐subunit of dioxygenase gene. Conclusions: Sequencing of the cloned libraries representing α‐subunit gene fragments (Rf1) and β‐subunit of dioxygenase showed the presence of hitherto unidentified dioxygenase in coal‐tar‐contaminated soil. Significance and Impact of the Study: The combination of the Rieske primers and bacterial community profiling represents a powerful tool for both assessing bioremediation potential and the exploration of novel dioxygenase genes in a contaminated environment.     

Emissions of Polycyclic Aromatic Hydrocarbons in the Atmosphere: An Indian Perspective

Organic compounds form a major fraction of airborne particles in the atmosphere and hence it is important to measure and identify them, especially the proportion of Polycyclic (Polynuclear) Aromatic Hydrocarbons (PAHs). The control and abatement of PAHs contamination requires the knowledge of the nature, source, and extent of pollution and hence existing literature on Indian studies was reviewed to gather information on the sources and emission rates of PAHs. Based on the results of the present study along with the data available from literature for particular PAHs in the ambient atmosphere, the vehicular and residential sector was identified as a major source of PAHs emission in many major Indian cities including Ahmedabad, Agra, Delhi, Kanpur, Lucknow, Mumbai, and Nagpur. Emissions of total PAHs range from 23–190 ng/m³, 369–1067 ng/m³, 20.8–100.8 ng/m³, and 12.7–206.4 μg/m³ from gasoline, diesel, petroleum refinery, and biomass, respectively, although it is recognized that this will vary from location to location. Additionally, the regulation and control of PAHs emission, and air quality standards for PAHs were also examined. Based on the toxicity assessment, the study highlights the need to include not only benzo[a]pyrene but also other probable human carcinogenic PAHs while developing a new air quality index for India.