The charge-transfer complex between protochlorophyllide and NADPH: an intermediate in protochlorophyllide photoreduction

A hypothesis describing the mechanism of photoactive protochlorophyllide (P) photoreduction in vivo, relating mainly to the molecular nature of the intermediates, is proposed. The hypothesis is compatible with currently published experimental data. After illumination of etiolated barley leaves at 143 to 153 K, the absorption of P remains essentially unchanged, but a new absorption band at 690 nm is observed. Appearance of this new intermediate enables to distinguish between light and dark stages of the photoconversion reaction. When returned to the higher temperature in the dark, the treated leaves begin accumulating chlorophyllide (Chlide), concomitant with the disappearance of the 690-nm band. The decay time of the excited P (P^*) is estimated at 300 ps, which approximates the time constant of photoinduced electron transfer (ET). It is suggested that the charge-transfer complex (CTC) in its ground state (GS) (ground state of CTC formed by the partial (δ) electron transfer), i.e. (P^δ−•••H–D^δ+), between P and NADPH – the electron and proton donor (H–D) – accumulates in the following sequence: P^* + H–D → (P^*•••H–D)→[(P^*•••H–D)←(P⁻•••H–D⁺)] → ¹(P⁻•••H–D⁺)] → ³(P⁻•••H–D⁺) → (P^δ−•••H–D ^δ+), where an equilibrium state (ES) – [(P^*•••H–D)←(P⁻•••H–D⁺)] – with a lifetime of about 1 to 2 ns, exists between the local excited (LE) and ET states. The existence of a triplet ET state – ³(P⁻•••H–D⁺) – is proposed because the time interval between recording of the ES and appearance of the CTC GS (35–250 ns) does not fit the lifetime of the singlet excited complex (exciplex). It is feasible that apart from NADPH, other intermediate proton carriers are contemporaneously involved in the dark reaction (P^δ−•••H–D^δ+) → Chlide, because proton binding to the C₇–C₈ bond in vivo takes place in the trans-configuration. The hydride ion may approach the C₇–C₈ bond from one side by heterolytic fission and an additional proton, donated by the protein group, may be simultaneously added to this bond from the opposite side of the porphyrin nucleus surface. This revised version was published online in June 2006 with corrections to the Cover Date.     

植物与植食性昆虫相互作用的分子机制

在长期的协同进化中,植物建立起应对昆虫取食为害的精密而又复杂的防御机制,植物转录组调控中防御应答基因的表达及防御物质的合成因不同的昆虫取食方式而异。一般来说,咀嚼式口器昆虫取食时造成大面积组织伤害,可诱导植物产生伤害反应;而刺吸式口器昆虫因其特殊的口针取食,诱导植物激活病原体相关的防御途径。不同的防御途径激活不同的识别机制和信号途径。本文从信号识别和转导上综述了不同食性的昆虫取食植物时所引发的防御反应,分析了昆虫-植物相互作用关系的分子机制。     

十种濒危植物的种群生态学特征及致危因素分析

从保护生态学的观点出发,对10个濒危植物的地理分布、生境条件、种群数量动态、空间分布格局、种间关系、种群的生命表、生殖力表、有性生殖、无性繁殖等种群生态学特征进行了综合分析。论述了濒危植物以光合、蒸腾、呼吸为主的生理生态学规律;预测种群数量动态的Leslie矩阵、刻画种群空间分布格局的模型、刻画种群生长和数量增长的Logistic方程和多元回归模型所反映出的生态学特征。分析了濒危植物种群动态、发展趋势以及在内外因素作用下的生态学特征和过程。针对濒危植物保护研究存在的问题,从生态学角度对我国未来濒危植物保护研究应注意的问题提出了建议。     

小型核酶的结构和催化机理

自然界存在的小型核酶主要有锤头型核酶、发夹型核酶、肝炎δ病毒（HDV）核酶和VS核酶.锤头型核酶由3个短螺旋和1个广义保守的连接序列组成;发夹型核酶的催化中心由两个肩并肩挨着的区域构成;HDV核酶折叠成包含五个螺旋臂（P1～P4）的双结结构;VS核酶由五个螺旋结构组成,这些螺旋结构通过两个连接域连接起来.小型核酶的催化机理与其分子结构密切相关.金属离子或特定碱基都可作为催化反应的关键成分.锤头型核酶的催化必须有金属离子（尤其是二价金属离子）参与,而发夹型核酶则完全不需要金属离子.基因组HDV核酶进行催化时要有金属离子和特定碱基互相配合.     

Estimating the product‐moment correlation in samples with censoring on both variables

Bivariate samples may be subject to censoring of both random variables. For example, for two toxins measured in batches of wheat grain, there may be specific detection limits. Alternatively, censoring may be incomplete over a certain domain, with the probability of detection depending on the toxin level. In either case, data are not missing at random, and the missing data pattern bears some information on the parameters of the underlying model (informative missingness), which can be exploited for a fully efficient analysis. Estimation (after suitable data transformation) of the correlation in such samples is the subject of the present paper. We consider several estimators. The first is based on the tetrachoric correlation. It is simple to compute, but does not exploit the full information. The other two estimators exploit all information and use full maximum likelihood, but involve heavier computations. The one assumes fixed detection limits, while the other involves a logistic model for the probability of detection. For a real data set, a logistic model for the probability of detection fitted markedly better than a model with fixed detection limits, suggesting that censoring is not complete.     

A Comparison of CO2 Uptake by the Green Algae Tetraedron minimum and Chlamydomonas monoica

Abstract: The ability of the green alga Tetraedron minimum to acquire inorganic carbon from its environment was investigated and compared with that of Chlamydomonas monoica. T. minimum showed a higher affinity for bicarbonate ions than C. monoica, regardless of whether it was grown at high or low CO₂ concentrations. Furthermore, T. minimum was distinguished by the fact that it maintained a large intracellular pool of inorganic carbon. These features may explain why this alga is able to proliferate in alkaline conditions.     

Immunolocalization and distribution of form ii rubisco in the pyrenoid and chloroplast stroma of amphidinium carterae and form i rubisco in the symbiont-derived plastids of peridinium foliaceum (dinophyceae)

Chloroplasts of peridinin-containing dinoflagellates have recently been shown to contain Form II Rubisco, which consists of large subunits only and is coded by nuclear genes. We have used immunoelectron microscopy to determine the distribution of Form II and Form I Rubisco in dinoflagellates. In sections of Amphidinium carterae Hulburt, the pyrenoid was intensely labeled and the rest of the chloroplast moderately labeled by antisera to Form II Rubisco from the purple non-sulfur bacterium Rhodospirillum rubrum and the symbiotic dinoflagellate Symbiodinium sp. No labeling was observed when sections were exposed to antiserum against Form I Rubisco of the haptophyte alga Isochrysis galbana. In contrast, cell sections of the dinoflagellate Peridinium foliaceum (Stein) Biecheler, whose chloroplasts belong to a diatom endosymbiont, showed no labeling with the two antisera against Form II Rubisco, but heavy pyrenoid labeling was present after treatment with antiserum against Form I Rubisco of I. galbana. The same immunolabeling results were obtained with the free-living diatom Phaeodactylum tricornutum Bohlin. Volumetric analysis of the distribution of Form II Rubisco in the chloroplast of A. carterae showed that, in cells grown under moderate photon irradiance, 72.9% of the plastid's Rubisco was localized in the pyrenoid, whereas in cells grown under low irradiance only 37.0% of the Rubisco was found in the pyrenoid. This light-induced concentration of Rubisco in the pyrenoid suggests that a CO₂–concentrating mechanism may elevate CO₂ within the pyrenoid, favoring the efficient fixation of CO₂ by pyrenoid Rubisco.     

Mechanism of substrate hydrolysis by a thermophilic endoglucanase from Thermotoga maritima†

A cellulase from the thermophile, Thermotoga maritima, hydrolyzed oligosaccharide substrates by an exoglucanase mode of action but acted as an endoglucanase to rapidly reduce the viscosity of the soluble polysaccharides carboxymethylcellulose and barley -glucan. The V _max for hydrolysis of the substrate, p-nitrophenyl -d-cellobioside, was 42 mol min^–1 (mg protein)^–1, while that for barley -glucan was 637. The enzyme had little activity on crystalline cellulose.     

昆虫抗菌肽结构与功能关系及其在分子设计中的应用

昆虫抗菌肽在自然分布广泛,结构多样,其作用机制尚未确切阐明,但其结构上的某些共同特征与其功能密切相关,同时,对其结构与功能间关系的研究有利于设计合成新的抗菌肽,为以后发现活性更强,毒性更低且作用广谱的抗菌素奠定基础。     

转基因植物中RNA介导的病毒抗性机制

介绍了近年来转基因植物中RNA介导的抗性特征和解释这种抗性机制的两种模型,一种是阈值模型,一种是质量模型,并对这两种模型的优缺点进行了讨论.